Click here to switch to the map view.

The map label for this gene is gcdC [H]

Identifier: 238916853

GI number: 238916853

Start: 937618

End: 937983

Strand: Direct

Name: gcdC [H]

Synonym: EUBELI_00922

Alternate gene names: 238916853

Gene position: 937618-937983 (Clockwise)

Preceding gene: 238916852

Following gene: 238916854

Centisome position: 43.73

GC content: 44.81

Gene sequence:

>366_bases
ATGAAGAACTATACAATTACAGTTAATGGTAACGTATATGATGTTACTGTAGAAGAAGGAACAGGCAGTGCAGCTCCAGC
AGCTAAGGCAGCCGCTCCTAAAGCAGCTCCAAAGGCTGCACCTAAGGCAGCAGCACCAGCAGGTGCTCAGGGAGCAGTTA
AAGTTAACGCTCCAATGCCAGGAAAGATTCTTAAGGTTAATGCAACAGCAGGTGCTGCTGTAAAGAAGGGCGATGTATTG
GTTGTCCTTGAAGCTATGAAGATGGAGAATGAAATCTGTGCTCCTCAGGATGGCACAATTGCAACTGTTGAGTGTGCAGC
TGGTGATTCTGTAGAGTCAGGTAAGGTATTAGTTTCATTAAATTAA

Upstream 100 bases:

>100_bases
TTGCAGTTATTACTGCAGCAATTGCAGCATCAGAAGGAACATCTACGGATGGTCTTGTTGTCCGCTCAATTAGAAAGGTT
AATAATAGGAGGAAATAATC

Downstream 100 bases:

>100_bases
TTATGATACTGATATAAAGTGACTTACGGAGGTATAAGATGAGTTATATTATAACAACTTTAGGAAACCTCGTTCACCAG
AGTGCATTCTTCGGACTTAC

Product: oxaloacetate decarboxylase

Products: NA

Alternate protein names: Biotin carrier [H]

Number of amino acids: Translated: 121; Mature: 121

Protein sequence:

>121_residues
MKNYTITVNGNVYDVTVEEGTGSAAPAAKAAAPKAAPKAAPKAAAPAGAQGAVKVNAPMPGKILKVNATAGAAVKKGDVL
VVLEAMKMENEICAPQDGTIATVECAAGDSVESGKVLVSLN

Sequences:

>Translated_121_residues
MKNYTITVNGNVYDVTVEEGTGSAAPAAKAAAPKAAPKAAPKAAAPAGAQGAVKVNAPMPGKILKVNATAGAAVKKGDVL
VVLEAMKMENEICAPQDGTIATVECAAGDSVESGKVLVSLN
>Mature_121_residues
MKNYTITVNGNVYDVTVEEGTGSAAPAAKAAAPKAAPKAAPKAAAPAGAQGAVKVNAPMPGKILKVNATAGAAVKKGDVL
VVLEAMKMENEICAPQDGTIATVECAAGDSVESGKVLVSLN

Specific function: Biotin carrier subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD) [H]

COG id: COG0511

COG function: function code I; Biotin carboxyl carrier protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 biotinyl-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001882
- InterPro:   IPR000089
- InterPro:   IPR011053 [H]

Pfam domain/function: PF00364 Biotin_lipoyl [H]

EC number: =4.1.1.70 [H]

Molecular weight: Translated: 11918; Mature: 11918

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: PS50968 BIOTINYL_LIPOYL ; PS00188 BIOTIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNYTITVNGNVYDVTVEEGTGSAAPAAKAAAPKAAPKAAPKAAAPAGAQGAVKVNAPMP
CCCEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC
GKILKVNATAGAAVKKGDVLVVLEAMKMENEICAPQDGTIATVECAAGDSVESGKVLVSL
CEEEEEECCCCCEEECCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEE
N
C
>Mature Secondary Structure
MKNYTITVNGNVYDVTVEEGTGSAAPAAKAAAPKAAPKAAPKAAAPAGAQGAVKVNAPMP
CCCEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC
GKILKVNATAGAAVKKGDVLVVLEAMKMENEICAPQDGTIATVECAAGDSVESGKVLVSL
CEEEEEECCCCCEEECCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEE
N
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10027965 [H]