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The map label for this gene is rbfA

Identifier: 238916827

GI number: 238916827

Start: 906661

End: 907053

Strand: Direct

Name: rbfA

Synonym: EUBELI_00895

Alternate gene names: 238916827

Gene position: 906661-907053 (Clockwise)

Preceding gene: 238916826

Following gene: 238916828

Centisome position: 42.28

GC content: 35.37

Gene sequence:

>393_bases
ATGCGTAAAAATAGTGTAAAGAATACCCGTATTAACGGAGAGGTATTGAAAGAATTAAGTAATATAATCAGAAGTGAGAT
TAAAGACCCTAGAATCAACCCTATGACTTCGGTTGTAGCGGTTGAGGTCGCTCCTGACCTTAAGACATGTAAGGCATATA
TAAGTGTTCTTGGTGATGAAAAGTCACAGAAGGATACGATTACAGGTCTTAAGAGTGCAGAAGGATATATAAGAAGACAG
CTTGCAAGAACTGTCAATTTAAGAAATACTCCTGAAATAAGATTCATTCTTGATCAGTCAATTGAGTATGGTATTAATAT
GTCTAAGCTTATTGATGAAGTTACAGAACATGATAATAAGATGCACGTTGAGGTTGAAGACGAGACAGAATAA

Upstream 100 bases:

>100_bases
GTATTTGAAAAGTTCAATGATATCCAGCCAGAGGATATGATTGAAGCACATATCATGGTTGAAGTGCCAAGATAGGATTT
AGTTTTTATTTGGAGAATAT

Downstream 100 bases:

>100_bases
AGAGGTTAGTCATGAATATTATTGAAGAAATCGGACATGCAAAGGTTATAGGTATCACAGGACATATCCGTCCTGATGGT
GACTGTGTTGGTTCAACATT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MRKNSVKNTRINGEVLKELSNIIRSEIKDPRINPMTSVVAVEVAPDLKTCKAYISVLGDEKSQKDTITGLKSAEGYIRRQ
LARTVNLRNTPEIRFILDQSIEYGINMSKLIDEVTEHDNKMHVEVEDETE

Sequences:

>Translated_130_residues
MRKNSVKNTRINGEVLKELSNIIRSEIKDPRINPMTSVVAVEVAPDLKTCKAYISVLGDEKSQKDTITGLKSAEGYIRRQ
LARTVNLRNTPEIRFILDQSIEYGINMSKLIDEVTEHDNKMHVEVEDETE
>Mature_130_residues
MRKNSVKNTRINGEVLKELSNIIRSEIKDPRINPMTSVVAVEVAPDLKTCKAYISVLGDEKSQKDTITGLKSAEGYIRRQ
LARTVNLRNTPEIRFILDQSIEYGINMSKLIDEVTEHDNKMHVEVEDETE

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=132, Percent_Identity=37.8787878787879, Blast_Score=91, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_EUBE2 (C4Z5N8)

Other databases:

- EMBL:   CP001104
- RefSeq:   YP_002930344.1
- ProteinModelPortal:   C4Z5N8
- GeneID:   7958389
- GenomeReviews:   CP001104_GR
- KEGG:   eel:EUBELI_00895
- OMA:   SIEYGNR
- ProtClustDB:   CLSK2506334
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 14815; Mature: 14815

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKNSVKNTRINGEVLKELSNIIRSEIKDPRINPMTSVVAVEVAPDLKTCKAYISVLGDE
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHEEEEEECCCHHHHHHHHHHHCCC
KSQKDTITGLKSAEGYIRRQLARTVNLRNTPEIRFILDQSIEYGINMSKLIDEVTEHDNK
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHCCCHHHHHHHHHHCCCE
MHVEVEDETE
EEEEECCCCC
>Mature Secondary Structure
MRKNSVKNTRINGEVLKELSNIIRSEIKDPRINPMTSVVAVEVAPDLKTCKAYISVLGDE
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHEEEEEECCCHHHHHHHHHHHCCC
KSQKDTITGLKSAEGYIRRQLARTVNLRNTPEIRFILDQSIEYGINMSKLIDEVTEHDNK
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHCCCHHHHHHHHHHCCCE
MHVEVEDETE
EEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA