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The map label for this gene is whiG [H]

Identifier: 238916778

GI number: 238916778

Start: 853378

End: 854136

Strand: Direct

Name: whiG [H]

Synonym: EUBELI_00840

Alternate gene names: 238916778

Gene position: 853378-854136 (Clockwise)

Preceding gene: 238916777

Following gene: 238916779

Centisome position: 39.8

GC content: 35.7

Gene sequence:

>759_bases
ATGGATGAGGCAGGCAGGGATAAACTGTGGAAGAATTATATATCAACCCATAGCAATGAGTATAGGGATGAATTGATAGT
TGAGTACGCACAGCTTGTTAAGCTGGTTGCTGGAAGACTTAATATGTATCTTGGGTATAATGTAGAATACGATGATCTTG
TAGGTTATGGAATATTTGGGCTTATTGATGCTATTGATAAGTTTGATTATGGCAAGAATGTAAAGTTTGAAACATATGCC
AGTTTAAGAATAAGAGGTGCAATTCTTGATCAGATAAGAAAAATGGACTGGATACCGAGATCTTTAAGACAGAAGCAAAA
ACGCATAGAAGCTGCAATGACTAAGATAGAAAGCGAAACAGGGCATATTGCAAGTGATGAGGAGCTTGCTGCTGAATTAG
GAATAACACAGGATGAATTGTCAGACTGGCAGGGGAAAATGAAGGCATCTAACCTTATATCACTTGATGAATATACAGAA
GCTGGAAGTGAAGTTAAAATGGAATCGGTTGGTAATTCACATTTTGACCAGCCAGAAGATGCCATGGAAAAAGAAGAACT
TAAGAAAATGATGGTAAAAGCGATTGACTCGCTGACAGAGAAGGAACGTAGTGTTGTTGTTTTGTATTATTATGAAGAAA
TGACATTAAAAGAAATAAGTCTTACACTTGAGGTTTCCGAGTCAAGAGTATCACAGCTACATACCAAAGCACTTAATAAA
ATGAAAAAATTATTAGGTGATTATGTATTTACTTTATAA

Upstream 100 bases:

>100_bases
ACAGAAAGAGGGACAAGAATCCGTAGAAGAATAATAGTGGCGCTAAAGCCAGATTTATGTTATTATTTCTACATATTTTA
TTATTTTGGGGGCACTGACC

Downstream 100 bases:

>100_bases
CATATAATTTTAAAAGGGGATTATGGCATGATAGATAACTGCAGGACTGGATATTTTCAATTTGATGCTAGACAAGACGG
ACTGTATTTTATAGTTTTTC

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MDEAGRDKLWKNYISTHSNEYRDELIVEYAQLVKLVAGRLNMYLGYNVEYDDLVGYGIFGLIDAIDKFDYGKNVKFETYA
SLRIRGAILDQIRKMDWIPRSLRQKQKRIEAAMTKIESETGHIASDEELAAELGITQDELSDWQGKMKASNLISLDEYTE
AGSEVKMESVGNSHFDQPEDAMEKEELKKMMVKAIDSLTEKERSVVVLYYYEEMTLKEISLTLEVSESRVSQLHTKALNK
MKKLLGDYVFTL

Sequences:

>Translated_252_residues
MDEAGRDKLWKNYISTHSNEYRDELIVEYAQLVKLVAGRLNMYLGYNVEYDDLVGYGIFGLIDAIDKFDYGKNVKFETYA
SLRIRGAILDQIRKMDWIPRSLRQKQKRIEAAMTKIESETGHIASDEELAAELGITQDELSDWQGKMKASNLISLDEYTE
AGSEVKMESVGNSHFDQPEDAMEKEELKKMMVKAIDSLTEKERSVVVLYYYEEMTLKEISLTLEVSESRVSQLHTKALNK
MKKLLGDYVFTL
>Mature_252_residues
MDEAGRDKLWKNYISTHSNEYRDELIVEYAQLVKLVAGRLNMYLGYNVEYDDLVGYGIFGLIDAIDKFDYGKNVKFETYA
SLRIRGAILDQIRKMDWIPRSLRQKQKRIEAAMTKIESETGHIASDEELAAELGITQDELSDWQGKMKASNLISLDEYTE
AGSEVKMESVGNSHFDQPEDAMEKEELKKMMVKAIDSLTEKERSVVVLYYYEEMTLKEISLTLEVSESRVSQLHTKALNK
MKKLLGDYVFTL

Specific function: The level of this sigma factor may be crucial in determining the developmental fate of hyphae [H]

COG id: COG1191

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

Organism=Escherichia coli, GI1788231, Length=222, Percent_Identity=38.7387387387387, Blast_Score=153, Evalue=8e-39,
Organism=Escherichia coli, GI1789448, Length=222, Percent_Identity=26.1261261261261, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1789098, Length=205, Percent_Identity=26.8292682926829, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000943
- InterPro:   IPR007627
- InterPro:   IPR007624
- InterPro:   IPR007630
- InterPro:   IPR012845
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04539 Sigma70_r3; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 29042; Mature: 29042

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: PS00716 SIGMA70_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEAGRDKLWKNYISTHSNEYRDELIVEYAQLVKLVAGRLNMYLGYNVEYDDLVGYGIFG
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
LIDAIDKFDYGKNVKFETYASLRIRGAILDQIRKMDWIPRSLRQKQKRIEAAMTKIESET
HHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCC
GHIASDEELAAELGITQDELSDWQGKMKASNLISLDEYTEAGSEVKMESVGNSHFDQPED
CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEHHHCCCCCCCCCHH
AMEKEELKKMMVKAIDSLTEKERSVVVLYYYEEMTLKEISLTLEVSESRVSQLHTKALNK
HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHEEEEEHHHHHHHHHHHHHHH
MKKLLGDYVFTL
HHHHHHHHHHCC
>Mature Secondary Structure
MDEAGRDKLWKNYISTHSNEYRDELIVEYAQLVKLVAGRLNMYLGYNVEYDDLVGYGIFG
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
LIDAIDKFDYGKNVKFETYASLRIRGAILDQIRKMDWIPRSLRQKQKRIEAAMTKIESET
HHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCC
GHIASDEELAAELGITQDELSDWQGKMKASNLISLDEYTEAGSEVKMESVGNSHFDQPED
CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEHHHCCCCCCCCCHH
AMEKEELKKMMVKAIDSLTEKERSVVVLYYYEEMTLKEISLTLEVSESRVSQLHTKALNK
HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHEEEEEHHHHHHHHHHHHHHH
MKKLLGDYVFTL
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2507166; 12000953 [H]