BacMap

Definition	Eubacterium eligens ATCC 27750 chromosome, complete genome.
Accession	NC_012778
Length	2,144,190

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The map label for this gene is ydbJ [H]

Identifier: 238916564

GI number: 238916564

Start: 631076

End: 631969

Strand: Direct

Name: ydbJ [H]

Synonym: EUBELI_00621

Alternate gene names: 238916564

Gene position: 631076-631969 (Clockwise)

Preceding gene: 238916563

Following gene: 238916565

Centisome position: 29.43

GC content: 37.36

Gene sequence:

>894_bases
ATGTGTAAGACTGTGTTTTGGGGAGGCAGAAGAATGATTTCTTTGAGTGGAGTTAATAAGAGATTAGGAAGTTTCAGACT
GAAGGACATCTCAATAGAGATTCCTGATGGATACATATGTGCACTTGTGGGGCAGAATGCGTCAGGAAAGACTACTCTTA
TTAAGATGATACTGGGGCTTTGCAGACCGGACGATGGAACGGTTGTAATTGATGGATTGAATTATCAGGAAGCGGAAAGC
GAGAAGAGAATCCGTGATATTACAGGAATAGTACCAGTCAATGAACTTATGAATTCAGAACTTTCACTTTTAGAGAATGG
AAGATGTTATGGCAGGTTTTACAGCAGATATGACGAAAGCATCTACATGGAGTATCTTGAACGGTTTGGACTTGATAGAA
AGATAAAGTTTGGAAAATTATCGAAGGGACAGAAGATAAAGGCACAGTTTGCATTTGCATTATCAACAGACCCAAAGTAT
CTGATACTTGATGAACCGACAGCTAATTTTGATCCTGATTTTAAACAGGATTTCCTGAATGTGATTATGCAGTTTATGGA
AAGCGGTAAGAAAAGTGTGATTATTGCATCACATATACTGGATGAATTAGACAGGATTGCAGATTATCTTATATATCTTG
ATAAGGGAGAACTTGTATATTCAGGAGATATAGAAAGCTTCAGGGATAAGTACAGGATAATATCAGGAGAAAGCTATAAA
GTGAAACTTCTTAAGCAGGAAGACATCATACATGTAGAGGACAGGAAATACGGAACTAAAGCACTTGTAGTCAATCATGG
ATATTCAAAGTATGATGGTGCACTTACGGTAACAGTTCCGACACTGGAAGAATTCATGTATCATTACAGTAAAAGAGGTG
AAAGTGTAATATGA

Upstream 100 bases:

>100_bases
ATAAATAAAGCAAGAACTGCTTGACAAATGTGTGCATGTACTGTATATATGTATATATACAGTGTATGTACAAAAATAGT
ATATCAGGTGTATAGCTGTT

Downstream 100 bases:

>100_bases
AATACTTAATGAGGGATTATATATATGGATGGCATTGGGAGAATTTCAAGGCATCATATGAACACGGAAATTCAGCAATA
TTTAATTTTTTAGCGGTACA

Product: ABC-2 type transport system ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MCKTVFWGGRRMISLSGVNKRLGSFRLKDISIEIPDGYICALVGQNASGKTTLIKMILGLCRPDDGTVVIDGLNYQEAES
EKRIRDITGIVPVNELMNSELSLLENGRCYGRFYSRYDESIYMEYLERFGLDRKIKFGKLSKGQKIKAQFAFALSTDPKY
LILDEPTANFDPDFKQDFLNVIMQFMESGKKSVIIASHILDELDRIADYLIYLDKGELVYSGDIESFRDKYRIISGESYK
VKLLKQEDIIHVEDRKYGTKALVVNHGYSKYDGALTVTVPTLEEFMYHYSKRGESVI

Sequences:

>Translated_297_residues
MCKTVFWGGRRMISLSGVNKRLGSFRLKDISIEIPDGYICALVGQNASGKTTLIKMILGLCRPDDGTVVIDGLNYQEAES
EKRIRDITGIVPVNELMNSELSLLENGRCYGRFYSRYDESIYMEYLERFGLDRKIKFGKLSKGQKIKAQFAFALSTDPKY
LILDEPTANFDPDFKQDFLNVIMQFMESGKKSVIIASHILDELDRIADYLIYLDKGELVYSGDIESFRDKYRIISGESYK
VKLLKQEDIIHVEDRKYGTKALVVNHGYSKYDGALTVTVPTLEEFMYHYSKRGESVI
>Mature_297_residues
MCKTVFWGGRRMISLSGVNKRLGSFRLKDISIEIPDGYICALVGQNASGKTTLIKMILGLCRPDDGTVVIDGLNYQEAES
EKRIRDITGIVPVNELMNSELSLLENGRCYGRFYSRYDESIYMEYLERFGLDRKIKFGKLSKGQKIKAQFAFALSTDPKY
LILDEPTANFDPDFKQDFLNVIMQFMESGKKSVIIASHILDELDRIADYLIYLDKGELVYSGDIESFRDKYRIISGESYK
VKLLKQEDIIHVEDRKYGTKALVVNHGYSKYDGALTVTVPTLEEFMYHYSKRGESVI

Specific function: Probably Part Of A Binding-Protein-Dependent Transport System Ydhwxyz For An Amino Acid. Probably Responsible For Energy Coupling To The Transport System. [C]

COG id: COG1131

COG function: function code V; ABC-type multidrug transport system, ATPase component

Gene ontology:

Cell location: Inner Membrane-Associated [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27262624, Length=239, Percent_Identity=29.2887029288703, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI27262626, Length=239, Percent_Identity=29.2887029288703, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI27477115, Length=220, Percent_Identity=27.7272727272727, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI116734710, Length=225, Percent_Identity=27.1111111111111, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI105990541, Length=198, Percent_Identity=29.2929292929293, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI153792144, Length=255, Percent_Identity=23.921568627451, Blast_Score=85, Evalue=9e-17,
Organism=Homo sapiens, GI27436953, Length=227, Percent_Identity=25.9911894273128, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI47078218, Length=237, Percent_Identity=26.5822784810127, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI21536376, Length=225, Percent_Identity=26.2222222222222, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI45446740, Length=225, Percent_Identity=26.6666666666667, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI27881501, Length=244, Percent_Identity=26.2295081967213, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI30795238, Length=244, Percent_Identity=26.2295081967213, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI150417984, Length=218, Percent_Identity=28.4403669724771, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI255708477, Length=253, Percent_Identity=27.6679841897233, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI9961252, Length=249, Percent_Identity=26.5060240963855, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI6005701, Length=244, Percent_Identity=24.1803278688525, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI4505771, Length=249, Percent_Identity=26.5060240963855, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI9961250, Length=249, Percent_Identity=26.5060240963855, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI42741659, Length=214, Percent_Identity=28.5046728971963, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI42490749, Length=211, Percent_Identity=27.4881516587678, Blast_Score=70, Evalue=3e-12,
Organism=Escherichia coli, GI1789672, Length=235, Percent_Identity=28.5106382978723, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787029, Length=220, Percent_Identity=29.5454545454545, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI87081782, Length=236, Percent_Identity=26.6949152542373, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1786872, Length=241, Percent_Identity=28.6307053941909, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI48994943, Length=241, Percent_Identity=27.8008298755187, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87081709, Length=232, Percent_Identity=28.448275862069, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786803, Length=206, Percent_Identity=27.6699029126214, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788225, Length=223, Percent_Identity=28.2511210762332, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI87082268, Length=231, Percent_Identity=28.5714285714286, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1790525, Length=243, Percent_Identity=29.2181069958848, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1786345, Length=212, Percent_Identity=27.8301886792453, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI2367384, Length=251, Percent_Identity=25.8964143426295, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790739, Length=213, Percent_Identity=27.6995305164319, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1786398, Length=227, Percent_Identity=28.1938325991189, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1786253, Length=197, Percent_Identity=24.8730964467005, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI87081791, Length=218, Percent_Identity=23.8532110091743, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789032, Length=208, Percent_Identity=26.9230769230769, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787792, Length=209, Percent_Identity=30.1435406698565, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1788540, Length=195, Percent_Identity=27.1794871794872, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788165, Length=217, Percent_Identity=29.0322580645161, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788897, Length=223, Percent_Identity=28.6995515695067, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788472, Length=225, Percent_Identity=26.2222222222222, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1789593, Length=224, Percent_Identity=26.7857142857143, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1788644, Length=238, Percent_Identity=26.0504201680672, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787182, Length=270, Percent_Identity=25.9259259259259, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789864, Length=244, Percent_Identity=21.7213114754098, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788210, Length=217, Percent_Identity=25.3456221198157, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI48995001, Length=203, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787548, Length=219, Percent_Identity=26.9406392694064, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787758, Length=206, Percent_Identity=23.3009708737864, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786319, Length=220, Percent_Identity=25.9090909090909, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI87081834, Length=193, Percent_Identity=25.3886010362694, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1790544, Length=222, Percent_Identity=24.7747747747748, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1786563, Length=200, Percent_Identity=24.5, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1789586, Length=209, Percent_Identity=26.3157894736842, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1790190, Length=232, Percent_Identity=25.4310344827586, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1789991, Length=212, Percent_Identity=26.8867924528302, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1786698, Length=207, Percent_Identity=24.6376811594203, Blast_Score=62, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17510237, Length=238, Percent_Identity=28.5714285714286, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI71983510, Length=209, Percent_Identity=29.1866028708134, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI71983523, Length=209, Percent_Identity=29.1866028708134, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI71983516, Length=209, Percent_Identity=29.1866028708134, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17565586, Length=221, Percent_Identity=24.4343891402715, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI193208177, Length=206, Percent_Identity=27.6699029126214, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI115533608, Length=231, Percent_Identity=27.2727272727273, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI193211017, Length=233, Percent_Identity=27.8969957081545, Blast_Score=76, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI193211015, Length=233, Percent_Identity=27.8969957081545, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI71996809, Length=233, Percent_Identity=27.8969957081545, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17567269, Length=210, Percent_Identity=28.5714285714286, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI193202349, Length=223, Percent_Identity=28.6995515695067, Blast_Score=71, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI115535101, Length=212, Percent_Identity=26.8867924528302, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI193202878, Length=204, Percent_Identity=24.0196078431373, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI133930907, Length=224, Percent_Identity=24.5535714285714, Blast_Score=65, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6323959, Length=239, Percent_Identity=26.3598326359833, Blast_Score=75, Evalue=9e-15,
Organism=Saccharomyces cerevisiae, GI6321081, Length=220, Percent_Identity=25.4545454545455, Blast_Score=70, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24643674, Length=234, Percent_Identity=27.3504273504274, Blast_Score=92, Evalue=5e-19,
Organism=Drosophila melanogaster, GI24666092, Length=237, Percent_Identity=24.8945147679325, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI281362751, Length=243, Percent_Identity=30.4526748971193, Blast_Score=89, Evalue=5e-18,
Organism=Drosophila melanogaster, GI24650855, Length=241, Percent_Identity=30.2904564315353, Blast_Score=88, Evalue=7e-18,
Organism=Drosophila melanogaster, GI24650853, Length=241, Percent_Identity=30.2904564315353, Blast_Score=88, Evalue=8e-18,
Organism=Drosophila melanogaster, GI221512771, Length=231, Percent_Identity=27.2727272727273, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24648314, Length=225, Percent_Identity=28, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI28574150, Length=223, Percent_Identity=26.457399103139, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI116007328, Length=223, Percent_Identity=26.457399103139, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24582014, Length=184, Percent_Identity=29.8913043478261, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24582012, Length=184, Percent_Identity=29.8913043478261, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI85725262, Length=221, Percent_Identity=29.4117647058824, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI28573571, Length=205, Percent_Identity=24.390243902439, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI28573573, Length=205, Percent_Identity=24.390243902439, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI221500365, Length=293, Percent_Identity=23.2081911262799, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI116007184, Length=293, Percent_Identity=23.2081911262799, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI85726357, Length=220, Percent_Identity=28.1818181818182, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI28571209, Length=237, Percent_Identity=24.4725738396624, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 33974; Mature: 33974

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: PS00572 GLYCOSYL_HYDROL_F1_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCKTVFWGGRRMISLSGVNKRLGSFRLKDISIEIPDGYICALVGQNASGKTTLIKMILGL
CCCEEEECCEEEEEECCCHHHHCCEEEEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHH
CRPDDGTVVIDGLNYQEAESEKRIRDITGIVPVNELMNSELSLLENGRCYGRFYSRYDES
CCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHCCHHHHHHCCCCEEHHHHHHHHH
IYMEYLERFGLDRKIKFGKLSKGQKIKAQFAFALSTDPKYLILDEPTANFDPDFKQDFLN
HHHHHHHHCCCCCEEECCCCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCHHHHHHH
VIMQFMESGKKSVIIASHILDELDRIADYLIYLDKGELVYSGDIESFRDKYRIISGESYK
HHHHHHHCCCCEEEEHHHHHHHHHHHHHHEEEECCCCEEEECCHHHHHHHEEEECCCCEE
VKLLKQEDIIHVEDRKYGTKALVVNHGYSKYDGALTVTVPTLEEFMYHYSKRGESVI
EEEEECCCEEEEECCCCCCEEEEEECCCCCCCCEEEEEEHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MCKTVFWGGRRMISLSGVNKRLGSFRLKDISIEIPDGYICALVGQNASGKTTLIKMILGL
CCCEEEECCEEEEEECCCHHHHCCEEEEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHH
CRPDDGTVVIDGLNYQEAESEKRIRDITGIVPVNELMNSELSLLENGRCYGRFYSRYDES
CCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHCCHHHHHHCCCCEEHHHHHHHHH
IYMEYLERFGLDRKIKFGKLSKGQKIKAQFAFALSTDPKYLILDEPTANFDPDFKQDFLN
HHHHHHHHCCCCCEEECCCCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCHHHHHHH
VIMQFMESGKKSVIIASHILDELDRIADYLIYLDKGELVYSGDIESFRDKYRIISGESYK
HHHHHHHCCCCEEEEHHHHHHHHHHHHHHEEEECCCCEEEECCHHHHHHHEEEECCCCEE
VKLLKQEDIIHVEDRKYGTKALVVNHGYSKYDGALTVTVPTLEEFMYHYSKRGESVI
EEEEECCCEEEEECCCCCCEEEEEECCCCCCCCEEEEEEHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]