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The map label for this gene is xylR [H]

Identifier: 238916563

GI number: 238916563

Start: 629415

End: 630551

Strand: Direct

Name: xylR [H]

Synonym: EUBELI_00620

Alternate gene names: 238916563

Gene position: 629415-630551 (Clockwise)

Preceding gene: 238916562

Following gene: 238916564

Centisome position: 29.35

GC content: 38.17

Gene sequence:

>1137_bases
ATGGATTCATCACAGAAACTAACAAACACGGATGTAAAAAAACTTAATAAAAACCGTATATTCAGACTGATATATAATTC
GGATAAGATATCAAGACAGGAGATAGCAGACCAGTTAGGTCTGTCGCTGCCAACGGTCAATCAGAATCTTAAGATGCTCA
TGGAAGATGGACTTATAGAATATGTTGGCAATTTCACTTCAACGGGTGGAAGAAGGGCACAGGCAATTACTATTGATAAT
AATGCAAGAAAAGCTATCAGCGTGAATATCAAAGCTGACTATATTAATGTAGATGTAGTCGGACTTAAAGGCCAGATTAT
ATACAGTATGGCTGTTAAAGCACATTTTAGCAAAAGCAGTGCATATATTGAGAAGCTTAAAGATGCGGTAAGACATGCAG
TGGATTATGTTGGAGCAGATGCAGATGACATTCTGGGAGTTGGCATTACAGTTCCGGGAATACTTGATGATGAAAAGCAG
ATTCTTATCTCAGCACCACCATTAAAAGCTAAGAACTATGATTTTACAAAGCTTATATCAGCTATTGATTATCCGGTCGT
AGTAATGAACGATGCGAGGGCAGAGGCATACGCAGACCACTGGTTTAATGGAAAGCCTGAAGATGAAAAAATATATATTA
TGCTTGGTGAAGGTGTCGGAGGTGCATATATTAACGCTTCCGCAATCAGAAATGGTGTTCATAACCGTGGCGGCGAATTC
GGACATATGGTTATTCACCCTGAAGGAAAGCAGTGCCTGTGTGGTAAGAAGGGCTGTTTTGAAGCATATGTTTCAGAAAA
GGTATTATCATCAGAGCTTGATATGACACTTGACAATTTCTTTGAACTGGCAGTGCAGGGAAATAAGAATAATTCCAATG
TGTTAGATGAATATATGGACAATCTGGCTCTTGGAATTAATAACATATACACAATGATGGACTGTGATATTGTTCTTGGC
GGAACAGTTGCACCATATCTTAAGCAATATGAGAATAGTATTAAAGAACGTCTTGTTAATGATTATTCCTTTGATACTGA
TGCGGATTATTTAAGAATATCAGATGGTGGTGGCAGAAAATCAGGGCTTGGTGCAGCATTAAGCTTTGTTGCCAGATTTA
TTGATGGTGTGGAATAA

Upstream 100 bases:

>100_bases
AGATGCAGGAATTGAGAAGTTTAAGAAAGATTATATTGCTGTATTTGGCGAATAATGTGACTGACACACAAGTTAACTGG
GATTAAGCGAGAGGTAATGG

Downstream 100 bases:

>100_bases
AGAAAGCTTATAAGATGGCGTGAAGTAGTGATTCTTGCTGCATGAGTGCTGAATGCTATGATGCGTCAGAGGGTTGCATA
AGTCTGGAATGCCTCAGTGC

Product: N-acetylglucosamine repressor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MDSSQKLTNTDVKKLNKNRIFRLIYNSDKISRQEIADQLGLSLPTVNQNLKMLMEDGLIEYVGNFTSTGGRRAQAITIDN
NARKAISVNIKADYINVDVVGLKGQIIYSMAVKAHFSKSSAYIEKLKDAVRHAVDYVGADADDILGVGITVPGILDDEKQ
ILISAPPLKAKNYDFTKLISAIDYPVVVMNDARAEAYADHWFNGKPEDEKIYIMLGEGVGGAYINASAIRNGVHNRGGEF
GHMVIHPEGKQCLCGKKGCFEAYVSEKVLSSELDMTLDNFFELAVQGNKNNSNVLDEYMDNLALGINNIYTMMDCDIVLG
GTVAPYLKQYENSIKERLVNDYSFDTDADYLRISDGGGRKSGLGAALSFVARFIDGVE

Sequences:

>Translated_378_residues
MDSSQKLTNTDVKKLNKNRIFRLIYNSDKISRQEIADQLGLSLPTVNQNLKMLMEDGLIEYVGNFTSTGGRRAQAITIDN
NARKAISVNIKADYINVDVVGLKGQIIYSMAVKAHFSKSSAYIEKLKDAVRHAVDYVGADADDILGVGITVPGILDDEKQ
ILISAPPLKAKNYDFTKLISAIDYPVVVMNDARAEAYADHWFNGKPEDEKIYIMLGEGVGGAYINASAIRNGVHNRGGEF
GHMVIHPEGKQCLCGKKGCFEAYVSEKVLSSELDMTLDNFFELAVQGNKNNSNVLDEYMDNLALGINNIYTMMDCDIVLG
GTVAPYLKQYENSIKERLVNDYSFDTDADYLRISDGGGRKSGLGAALSFVARFIDGVE
>Mature_378_residues
MDSSQKLTNTDVKKLNKNRIFRLIYNSDKISRQEIADQLGLSLPTVNQNLKMLMEDGLIEYVGNFTSTGGRRAQAITIDN
NARKAISVNIKADYINVDVVGLKGQIIYSMAVKAHFSKSSAYIEKLKDAVRHAVDYVGADADDILGVGITVPGILDDEKQ
ILISAPPLKAKNYDFTKLISAIDYPVVVMNDARAEAYADHWFNGKPEDEKIYIMLGEGVGGAYINASAIRNGVHNRGGEF
GHMVIHPEGKQCLCGKKGCFEAYVSEKVLSSELDMTLDNFFELAVQGNKNNSNVLDEYMDNLALGINNIYTMMDCDIVLG
GTVAPYLKQYENSIKERLVNDYSFDTDADYLRISDGGGRKSGLGAALSFVARFIDGVE

Specific function: Transcriptional repressor of xylose-utilizing enzymes [H]

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Escherichia coli, GI1786891, Length=272, Percent_Identity=26.8382352941176, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787363, Length=257, Percent_Identity=27.2373540856031, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI87082127, Length=288, Percent_Identity=22.5694444444444, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI87082230, Length=247, Percent_Identity=25.5060728744939, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787878, Length=297, Percent_Identity=20.5387205387205, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000600
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 41603; Mature: 41603

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSSQKLTNTDVKKLNKNRIFRLIYNSDKISRQEIADQLGLSLPTVNQNLKMLMEDGLIE
CCCCCCCCCHHHHHHCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCHHHHHHHHCCHHH
YVGNFTSTGGRRAQAITIDNNARKAISVNIKADYINVDVVGLKGQIIYSMAVKAHFSKSS
HHCCCCCCCCCEEEEEEEECCCCEEEEEEEEEEEEEEEEEECCCEEEEEEHHHHHHCHHH
AYIEKLKDAVRHAVDYVGADADDILGVGITVPGILDDEKQILISAPPLKAKNYDFTKLIS
HHHHHHHHHHHHHHHHCCCCHHHEEEECEECCCCCCCCCEEEEECCCCCCCCCCHHHHHH
AIDYPVVVMNDARAEAYADHWFNGKPEDEKIYIMLGEGVGGAYINASAIRNGVHNRGGEF
HCCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEEEECCCCCCEEEHHHHHCCHHHCCCCC
GHMVIHPEGKQCLCGKKGCFEAYVSEKVLSSELDMTLDNFFELAVQGNKNNSNVLDEYMD
CEEEECCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHH
NLALGINNIYTMMDCDIVLGGTVAPYLKQYENSIKERLVNDYSFDTDADYLRISDGGGRK
HHHHHHHHEEEEEECCEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCC
SGLGAALSFVARFIDGVE
CHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDSSQKLTNTDVKKLNKNRIFRLIYNSDKISRQEIADQLGLSLPTVNQNLKMLMEDGLIE
CCCCCCCCCHHHHHHCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCHHHHHHHHCCHHH
YVGNFTSTGGRRAQAITIDNNARKAISVNIKADYINVDVVGLKGQIIYSMAVKAHFSKSS
HHCCCCCCCCCEEEEEEEECCCCEEEEEEEEEEEEEEEEEECCCEEEEEEHHHHHHCHHH
AYIEKLKDAVRHAVDYVGADADDILGVGITVPGILDDEKQILISAPPLKAKNYDFTKLIS
HHHHHHHHHHHHHHHHCCCCHHHEEEECEECCCCCCCCCEEEEECCCCCCCCCCHHHHHH
AIDYPVVVMNDARAEAYADHWFNGKPEDEKIYIMLGEGVGGAYINASAIRNGVHNRGGEF
HCCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEEEECCCCCCEEEHHHHHCCHHHCCCCC
GHMVIHPEGKQCLCGKKGCFEAYVSEKVLSSELDMTLDNFFELAVQGNKNNSNVLDEYMD
CEEEECCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHH
NLALGINNIYTMMDCDIVLGGTVAPYLKQYENSIKERLVNDYSFDTDADYLRISDGGGRK
HHHHHHHHEEEEEECCEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCC
SGLGAALSFVARFIDGVE
CHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2544559 [H]