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The map label for this gene is ypsC [H]

Identifier: 238916352

GI number: 238916352

Start: 419965

End: 421125

Strand: Direct

Name: ypsC [H]

Synonym: EUBELI_00399

Alternate gene names: 238916352

Gene position: 419965-421125 (Clockwise)

Preceding gene: 238916351

Following gene: 238916353

Centisome position: 19.59

GC content: 38.07

Gene sequence:

>1161_bases
ATGAATACATATGAATTAATTGCTCCCTGCCATTTTGGTCTGGAATCAGTATTAAAAAGGGAGATATATGATCTTGGATA
TGATATATCATCGGTAGAGGATGGAAAGGTCACTTTTGTAGGTGATTCTGAGGCCATATGCCGTGCTAATATAAATTTAA
GGACTACAGAGCGTATTTTGATTAAAGTGGGTCAATTTAAGGCTGAGACATTTACAGAGCTGTTTGACAATACTAAAGCT
CTTGAGTGGGAGAATTATATACCTAAGAATGGCAAGTTCTGGGTAACAAAAGCTAATTCTGTTAACAGTAAACTGTTCAG
CAGTTCTGATATCCAGTCAATTGTTAAGAAAGCAATTGTAGAGAGACTTAAAGAACATTATAGAATTGGATGGTTTGAGG
AAGATGGTGATTCTTATCCTATAAGAGTAACTATTATGAAGGATATTGTGACTATTGCACTTGACACATCAGGTGATTCA
CTTCATAAGAGAGGATATAGACCGGCAGCTGGAAAAGCTCCTATATCTGAGACACTTGCAGCGGCGCTTATTATGCTTAC
GCCGTGGAGAGGCGACAGAATTCTTGTTGATCCATTCTGCGGAAGTGGCACATTTCCAATTGAAGCAGCTATGATAGCAG
CTAATATTGCACCGGGAATGAATCGTAAGTTTACTGCACAGAAGTGGACTAACATAATTGACAAGCAATTGTGGTATGAT
GCTGTTGATGAAGCCGAGGATATGATTAATCTTGATATTGAAACGGATATCCAGGGATTTGATATTGACGCAGATGTTAT
AAGGAAAGCAAGAAGTAATGCGGAGAATGCCGGAGTAGAGAAGTTAATACATTTTCAGGAAAGAAGCGTGGCAGACCTAA
GCCATCATAAGAAATACGGTTTTATTATAACTAATCCGCCTTATGGTGAAAGACTTGAGGACAAGGAGACACTTCCAGGA
ATATATTCTGCATTTGGACGACAGTTTGCAAAATTAGATTCATGGTCAGCCTATATGATTACTTCATATGAGGATGCTGT
CAAATATTTTGGCAGAAAGCCGGATAAGAATAGAAAGATATATAATGGAATGTTAAAGACATATTTTTACTCATTCCAGG
GACCAAAGCCGCCTAAGAAAGAGAAGGGACAGGAAAGATAA

Upstream 100 bases:

>100_bases
AGGATTTGAGGCATATAAAGGAATGTGTGTAATCAATTAACGGATTGACACTCATTTGCGTAGGCATTAATATATATATA
AATGTACATTTGGAGGATAT

Downstream 100 bases:

>100_bases
TTATGACTACTATTATTTTAGCGTCTAATAATAAGGACAAGGTTAAGGAAGTTAAAGAGATTCTTAAAGGGTATAATGTT
ATCTCTCTTAAGGATGCTGG

Product: N6-adenine-specific DNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 386; Mature: 386

Protein sequence:

>386_residues
MNTYELIAPCHFGLESVLKREIYDLGYDISSVEDGKVTFVGDSEAICRANINLRTTERILIKVGQFKAETFTELFDNTKA
LEWENYIPKNGKFWVTKANSVNSKLFSSSDIQSIVKKAIVERLKEHYRIGWFEEDGDSYPIRVTIMKDIVTIALDTSGDS
LHKRGYRPAAGKAPISETLAAALIMLTPWRGDRILVDPFCGSGTFPIEAAMIAANIAPGMNRKFTAQKWTNIIDKQLWYD
AVDEAEDMINLDIETDIQGFDIDADVIRKARSNAENAGVEKLIHFQERSVADLSHHKKYGFIITNPPYGERLEDKETLPG
IYSAFGRQFAKLDSWSAYMITSYEDAVKYFGRKPDKNRKIYNGMLKTYFYSFQGPKPPKKEKGQER

Sequences:

>Translated_386_residues
MNTYELIAPCHFGLESVLKREIYDLGYDISSVEDGKVTFVGDSEAICRANINLRTTERILIKVGQFKAETFTELFDNTKA
LEWENYIPKNGKFWVTKANSVNSKLFSSSDIQSIVKKAIVERLKEHYRIGWFEEDGDSYPIRVTIMKDIVTIALDTSGDS
LHKRGYRPAAGKAPISETLAAALIMLTPWRGDRILVDPFCGSGTFPIEAAMIAANIAPGMNRKFTAQKWTNIIDKQLWYD
AVDEAEDMINLDIETDIQGFDIDADVIRKARSNAENAGVEKLIHFQERSVADLSHHKKYGFIITNPPYGERLEDKETLPG
IYSAFGRQFAKLDSWSAYMITSYEDAVKYFGRKPDKNRKIYNGMLKTYFYSFQGPKPPKKEKGQER
>Mature_386_residues
MNTYELIAPCHFGLESVLKREIYDLGYDISSVEDGKVTFVGDSEAICRANINLRTTERILIKVGQFKAETFTELFDNTKA
LEWENYIPKNGKFWVTKANSVNSKLFSSSDIQSIVKKAIVERLKEHYRIGWFEEDGDSYPIRVTIMKDIVTIALDTSGDS
LHKRGYRPAAGKAPISETLAAALIMLTPWRGDRILVDPFCGSGTFPIEAAMIAANIAPGMNRKFTAQKWTNIIDKQLWYD
AVDEAEDMINLDIETDIQGFDIDADVIRKARSNAENAGVEKLIHFQERSVADLSHHKKYGFIITNPPYGERLEDKETLPG
IYSAFGRQFAKLDSWSAYMITSYEDAVKYFGRKPDKNRKIYNGMLKTYFYSFQGPKPPKKEKGQER

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=346, Percent_Identity=33.5260115606936, Blast_Score=178, Evalue=5e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 43914; Mature: 43914

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS00092 N6_MTASE ; PS01261 UPF0020

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTYELIAPCHFGLESVLKREIYDLGYDISSVEDGKVTFVGDSEAICRANINLRTTERIL
CCCCEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCEEEECCCCCHHHEEE
IKVGQFKAETFTELFDNTKALEWENYIPKNGKFWVTKANSVNSKLFSSSDIQSIVKKAIV
HHHCCHHHHHHHHHHCCCCCEECCCCCCCCCCEEEEECCCCCHHHHCHHHHHHHHHHHHH
ERLKEHYRIGWFEEDGDSYPIRVTIMKDIVTIALDTSGDSLHKRGYRPAAGKAPISETLA
HHHHHHHCCCCEECCCCCCCEEEEEEECEEEEEEECCCCHHHHCCCCCCCCCCCHHHHHH
AALIMLTPWRGDRILVDPFCGSGTFPIEAAMIAANIAPGMNRKFTAQKWTNIIDKQLWYD
HHHHHEECCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
AVDEAEDMINLDIETDIQGFDIDADVIRKARSNAENAGVEKLIHFQERSVADLSHHKKYG
HHHHHHHHEECEEECCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEE
FIITNPPYGERLEDKETLPGIYSAFGRQFAKLDSWSAYMITSYEDAVKYFGRKPDKNRKI
EEECCCCCCCCCCCHHCCCHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHCCCCCCCHHH
YNGMLKTYFYSFQGPKPPKKEKGQER
HHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNTYELIAPCHFGLESVLKREIYDLGYDISSVEDGKVTFVGDSEAICRANINLRTTERIL
CCCCEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCEEEECCCCCHHHEEE
IKVGQFKAETFTELFDNTKALEWENYIPKNGKFWVTKANSVNSKLFSSSDIQSIVKKAIV
HHHCCHHHHHHHHHHCCCCCEECCCCCCCCCCEEEEECCCCCHHHHCHHHHHHHHHHHHH
ERLKEHYRIGWFEEDGDSYPIRVTIMKDIVTIALDTSGDSLHKRGYRPAAGKAPISETLA
HHHHHHHCCCCEECCCCCCCEEEEEEECEEEEEEECCCCHHHHCCCCCCCCCCCHHHHHH
AALIMLTPWRGDRILVDPFCGSGTFPIEAAMIAANIAPGMNRKFTAQKWTNIIDKQLWYD
HHHHHEECCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
AVDEAEDMINLDIETDIQGFDIDADVIRKARSNAENAGVEKLIHFQERSVADLSHHKKYG
HHHHHHHHEECEEECCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEE
FIITNPPYGERLEDKETLPGIYSAFGRQFAKLDSWSAYMITSYEDAVKYFGRKPDKNRKI
EEECCCCCCCCCCCHHCCCHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHCCCCCCCHHH
YNGMLKTYFYSFQGPKPPKKEKGQER
HHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377; 2423526 [H]