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The map label for this gene is yrrC [H]

Identifier: 238916192

GI number: 238916192

Start: 252152

End: 254074

Strand: Direct

Name: yrrC [H]

Synonym: EUBELI_00226

Alternate gene names: 238916192

Gene position: 252152-254074 (Clockwise)

Preceding gene: 238916191

Following gene: 238916193

Centisome position: 11.76

GC content: 41.34

Gene sequence:

>1923_bases
GTGAAATATGTAGAGGGCTTTGTGGAGAATATTATCTTCAGGAATGAAGACAATGGATATACGGTTTTTAATATTGTATA
CGATGATGAAGAAATCACCTGTGTTGGAGTGTTAAGCTATATCAACACAGGTGAATTTATTACCGCACAAGGCGAATTTG
TTAAGCATGCAGTTTACTACATGCAGTTTAAAGTCACATCTTATGAGTTCAGAGCGCCGGATGATGCTGCATCCGTAAGG
CGTTATCTAAGCTCCGGGGCAATAAAGGGTATCGGCGAGAAGATGGCTGAACGAATAGTTAAGACATTTGGCGATGATAC
ATTCAGGATTATGGAAGAAGAACCGGAGCGTCTGGCTGAGATTAAAGGAATAAGCATGTCTAAAGCTATGGATATAGCGA
ACCAGCTTATTGACAAGAAAGACATCAGAAAAGCAATGATGTTTCTTCAGCGTTATGGAATCCAGATGAATCTTGCCAAC
AAAATATTTAAGCGTTATGGAAACGACATTTATAACATTCTTGAACAGAATCCGTACAGGCTTGCTGATGACATAGAGGG
TGTCGGTTTTAGGACGGCTGATGAGATTGCTTCGCGTGCCGGAATCAAGATTGATTCTGAATTCAGGATTAAGAGCGGAA
TATTTTATGTGCTTAATCAGGCGACAATGCAGGGGCACACATATCTTCCGTATGATAAGCTTGTGCGTCAGGTAAACGAA
TTGCTTTTGATTGATGTTCAGGATTATGACAAATATCTTATGGACCTGACAATGGATAAGAAGATAGTTGTTAAGGTTAA
GGACAATGTAAAATGTGTCTATGCCCGTATGTATTACAACATGGAAGCAAATGTTGCAGCTATGCTTAATAATCTTGACG
TCCAGATTGAGGAAGACCAGAAATTCATAGATGACAGGATTGCAAGGATTGAGGATAAAGAAGGAATAACTCTTGATGAT
ATCCAGAAAGAGGCTGTTGCGAAAGCAGTAAGAAACGGGCTTGTTATTGTTACTGGCGGTCCGGGAACCGGTAAGACTAC
AACTATTAATACAATAATCAAATATTTTGAGCTGGAAGGTCTGGAAATCAGGCTGGCAGCGCCTACGGGACGTGCAGCCA
AGAGAATGACAGAAGCCTGTGGATATGAAGCACAGACTATCCACAGAATGTTAGAGATAAGCGGCGGCGTTCCTGAGGGT
GACAGAAAGTCGGCGGCAACAGGGCTGTCTATGTTCTTTGAGAGAAATGAGGACAATCCGCTTGAAGCTGATGTTATTAT
TGTTGATGAGATGTCAATGGTAGACATTAGCATTATGAATTCACTTCTTAAAGCTGTTTCGATTGGAACAAAACTGATTC
TTGTAGGTGATGTGGACCAGCTTCCAAGTGTAGGTCCGGGAAATGTACTTAAAGACATTATAGAATCCGGATGTTTTCCG
GTTGTTAAGCTGGAGAGGATATTCAGACAGGCGGCACAGAGTGAGATTATTATTAACGCCCATAAGATAAACAGGGGTGA
GGAGGTAGTACTTAACAAGTACAGCAAGGATTTTCTCTTTGTTCACAGAAACGGTGCTGACAATATTATAAATGCGATGA
AAACGCTTATTAAGGACAAACTTCCGGACTATGTAGGTGCCGATGTGTATGACCTTCAGATTCTTACTCCATCGCGAAAA
TCCAATGTCGGGGTGGAACGTCTTAATAAGATTATGCAGGATTTTCTTAATCCGGCTGATGCTATCAAGCAGGAAAGACA
GGTCGGTGATGTTACTTTCCGTGAAGGTGATAAGGTTATGCAGATTAAGAATGACTATCAGCTTGCATGGGAAAAACGAA
GCAGATACGGTATTCCAACAGAACAGGGAACGGGCGCATTTAACGGGGATACCGGAGTTATTAGAGAGAATAAGCACATT
TGA

Upstream 100 bases:

>100_bases
GAGCAGATGAAGAGAAATTATTCTACAGAGTCTATTCCTAAGGCAGATGAGCAGAAATAATATTTAACATAAAGGAGATA
ACAGATTGGATTACGAGTCT

Downstream 100 bases:

>100_bases
TGAGAATGTAACTGTGAAATTCGAAGATGGCAGATTCGTTACTTATGAATTCTCTCAGCTTGATGAGCTTGAACTTGCGT
ATGCGATTACAGTTCACAAA

Product: exodeoxyribonuclease V

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 640; Mature: 640

Protein sequence:

>640_residues
MKYVEGFVENIIFRNEDNGYTVFNIVYDDEEITCVGVLSYINTGEFITAQGEFVKHAVYYMQFKVTSYEFRAPDDAASVR
RYLSSGAIKGIGEKMAERIVKTFGDDTFRIMEEEPERLAEIKGISMSKAMDIANQLIDKKDIRKAMMFLQRYGIQMNLAN
KIFKRYGNDIYNILEQNPYRLADDIEGVGFRTADEIASRAGIKIDSEFRIKSGIFYVLNQATMQGHTYLPYDKLVRQVNE
LLLIDVQDYDKYLMDLTMDKKIVVKVKDNVKCVYARMYYNMEANVAAMLNNLDVQIEEDQKFIDDRIARIEDKEGITLDD
IQKEAVAKAVRNGLVIVTGGPGTGKTTTINTIIKYFELEGLEIRLAAPTGRAAKRMTEACGYEAQTIHRMLEISGGVPEG
DRKSAATGLSMFFERNEDNPLEADVIIVDEMSMVDISIMNSLLKAVSIGTKLILVGDVDQLPSVGPGNVLKDIIESGCFP
VVKLERIFRQAAQSEIIINAHKINRGEEVVLNKYSKDFLFVHRNGADNIINAMKTLIKDKLPDYVGADVYDLQILTPSRK
SNVGVERLNKIMQDFLNPADAIKQERQVGDVTFREGDKVMQIKNDYQLAWEKRSRYGIPTEQGTGAFNGDTGVIRENKHI

Sequences:

>Translated_640_residues
MKYVEGFVENIIFRNEDNGYTVFNIVYDDEEITCVGVLSYINTGEFITAQGEFVKHAVYYMQFKVTSYEFRAPDDAASVR
RYLSSGAIKGIGEKMAERIVKTFGDDTFRIMEEEPERLAEIKGISMSKAMDIANQLIDKKDIRKAMMFLQRYGIQMNLAN
KIFKRYGNDIYNILEQNPYRLADDIEGVGFRTADEIASRAGIKIDSEFRIKSGIFYVLNQATMQGHTYLPYDKLVRQVNE
LLLIDVQDYDKYLMDLTMDKKIVVKVKDNVKCVYARMYYNMEANVAAMLNNLDVQIEEDQKFIDDRIARIEDKEGITLDD
IQKEAVAKAVRNGLVIVTGGPGTGKTTTINTIIKYFELEGLEIRLAAPTGRAAKRMTEACGYEAQTIHRMLEISGGVPEG
DRKSAATGLSMFFERNEDNPLEADVIIVDEMSMVDISIMNSLLKAVSIGTKLILVGDVDQLPSVGPGNVLKDIIESGCFP
VVKLERIFRQAAQSEIIINAHKINRGEEVVLNKYSKDFLFVHRNGADNIINAMKTLIKDKLPDYVGADVYDLQILTPSRK
SNVGVERLNKIMQDFLNPADAIKQERQVGDVTFREGDKVMQIKNDYQLAWEKRSRYGIPTEQGTGAFNGDTGVIRENKHI
>Mature_640_residues
MKYVEGFVENIIFRNEDNGYTVFNIVYDDEEITCVGVLSYINTGEFITAQGEFVKHAVYYMQFKVTSYEFRAPDDAASVR
RYLSSGAIKGIGEKMAERIVKTFGDDTFRIMEEEPERLAEIKGISMSKAMDIANQLIDKKDIRKAMMFLQRYGIQMNLAN
KIFKRYGNDIYNILEQNPYRLADDIEGVGFRTADEIASRAGIKIDSEFRIKSGIFYVLNQATMQGHTYLPYDKLVRQVNE
LLLIDVQDYDKYLMDLTMDKKIVVKVKDNVKCVYARMYYNMEANVAAMLNNLDVQIEEDQKFIDDRIARIEDKEGITLDD
IQKEAVAKAVRNGLVIVTGGPGTGKTTTINTIIKYFELEGLEIRLAAPTGRAAKRMTEACGYEAQTIHRMLEISGGVPEG
DRKSAATGLSMFFERNEDNPLEADVIIVDEMSMVDISIMNSLLKAVSIGTKLILVGDVDQLPSVGPGNVLKDIIESGCFP
VVKLERIFRQAAQSEIIINAHKINRGEEVVLNKYSKDFLFVHRNGADNIINAMKTLIKDKLPDYVGADVYDLQILTPSRK
SNVGVERLNKIMQDFLNPADAIKQERQVGDVTFREGDKVMQIKNDYQLAWEKRSRYGIPTEQGTGAFNGDTGVIRENKHI

Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789182, Length=434, Percent_Identity=28.8018433179723, Blast_Score=96, Evalue=5e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR006345 [H]

Pfam domain/function: NA

EC number: 3.1.11.5

Molecular weight: Translated: 72382; Mature: 72382

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYVEGFVENIIFRNEDNGYTVFNIVYDDEEITCVGVLSYINTGEFITAQGEFVKHAVYY
CCHHHHHHHHHEEECCCCCEEEEEEEECCCCEEEEEHHHHHCCCCEEEECCHHHHHEEEE
MQFKVTSYEFRAPDDAASVRRYLSSGAIKGIGEKMAERIVKTFGDDTFRIMEEEPERLAE
EEEEEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEHHHHCHHHHHH
IKGISMSKAMDIANQLIDKKDIRKAMMFLQRYGIQMNLANKIFKRYGNDIYNILEQNPYR
HCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCEEEHHHHHHHHHCCHHHHHHCCCCCC
LADDIEGVGFRTADEIASRAGIKIDSEFRIKSGIFYVLNQATMQGHTYLPYDKLVRQVNE
CHHCCCCCCCCCHHHHHHHCCCEECCCEEECCCEEEEEEHHHHCCCCCCCHHHHHHHHHH
LLLIDVQDYDKYLMDLTMDKKIVVKVKDNVKCVYARMYYNMEANVAAMLNNLDVQIEEDQ
EEEEEEHHHHHHHHHHCCCCEEEEEEECCCEEEEEEEEECCCCCHHHHHCCCCEEECCHH
KFIDDRIARIEDKEGITLDDIQKEAVAKAVRNGLVIVTGGPGTGKTTTINTIIKYFELEG
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHCCCC
LEIRLAAPTGRAAKRMTEACGYEAQTIHRMLEISGGVPEGDRKSAATGLSMFFERNEDNP
CEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCC
LEADVIIVDEMSMVDISIMNSLLKAVSIGTKLILVGDVDQLPSVGPGNVLKDIIESGCFP
CCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHCCCCCCCHHHHHHHHCCCCC
VVKLERIFRQAAQSEIIINAHKINRGEEVVLNKYSKDFLFVHRNGADNIINAMKTLIKDK
HHHHHHHHHHHCCCCEEEEEEECCCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHH
LPDYVGADVYDLQILTPSRKSNVGVERLNKIMQDFLNPADAIKQERQVGDVTFREGDKVM
CCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCEECCCCEEE
QIKNDYQLAWEKRSRYGIPTEQGTGAFNGDTGVIRENKHI
EECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCCC
>Mature Secondary Structure
MKYVEGFVENIIFRNEDNGYTVFNIVYDDEEITCVGVLSYINTGEFITAQGEFVKHAVYY
CCHHHHHHHHHEEECCCCCEEEEEEEECCCCEEEEEHHHHHCCCCEEEECCHHHHHEEEE
MQFKVTSYEFRAPDDAASVRRYLSSGAIKGIGEKMAERIVKTFGDDTFRIMEEEPERLAE
EEEEEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEHHHHCHHHHHH
IKGISMSKAMDIANQLIDKKDIRKAMMFLQRYGIQMNLANKIFKRYGNDIYNILEQNPYR
HCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCEEEHHHHHHHHHCCHHHHHHCCCCCC
LADDIEGVGFRTADEIASRAGIKIDSEFRIKSGIFYVLNQATMQGHTYLPYDKLVRQVNE
CHHCCCCCCCCCHHHHHHHCCCEECCCEEECCCEEEEEEHHHHCCCCCCCHHHHHHHHHH
LLLIDVQDYDKYLMDLTMDKKIVVKVKDNVKCVYARMYYNMEANVAAMLNNLDVQIEEDQ
EEEEEEHHHHHHHHHHCCCCEEEEEEECCCEEEEEEEEECCCCCHHHHHCCCCEEECCHH
KFIDDRIARIEDKEGITLDDIQKEAVAKAVRNGLVIVTGGPGTGKTTTINTIIKYFELEG
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHCCCC
LEIRLAAPTGRAAKRMTEACGYEAQTIHRMLEISGGVPEGDRKSAATGLSMFFERNEDNP
CEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCC
LEADVIIVDEMSMVDISIMNSLLKAVSIGTKLILVGDVDQLPSVGPGNVLKDIIESGCFP
CCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHCCCCCCCHHHHHHHHCCCCC
VVKLERIFRQAAQSEIIINAHKINRGEEVVLNKYSKDFLFVHRNGADNIINAMKTLIKDK
HHHHHHHHHHHCCCCEEEEEEECCCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHH
LPDYVGADVYDLQILTPSRKSNVGVERLNKIMQDFLNPADAIKQERQVGDVTFREGDKVM
CCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCEECCCCEEE
QIKNDYQLAWEKRSRYGIPTEQGTGAFNGDTGVIRENKHI
EECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]