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The map label for this gene is rhaS [H]

Identifier: 238916124

GI number: 238916124

Start: 186100

End: 186933

Strand: Direct

Name: rhaS [H]

Synonym: EUBELI_00158

Alternate gene names: 238916124

Gene position: 186100-186933 (Clockwise)

Preceding gene: 238916120

Following gene: 238916125

Centisome position: 8.68

GC content: 35.13

Gene sequence:

>834_bases
ATGTTCCAGGATATGTCGAAGGATTTTGATATTAAGAGGATAAAAAGAAGTAATACCAGTTGTAGTACAGGGGTAGGGGC
ACATGTGCATCCGTTTAATGAGATATTTTATCTTTCGAGCGGAGAGTGCACAAGTTTTATTGACCACAACATTTATAAGT
TCGGAAAGGGCGATCTTGTGATTGTTCCAAGTGGATGTCTTCACAGGACAACTTATAATGGAAAAGGAATGCATGAAAGA
ATTGTTATAAGCTTTAGAAATGAAGCAACTGAATGGATTCAGAACCAGACTGGTAAAGAACTTATGGAAAACTGCATGAA
GCCGGGAGTTGTTAATATTCCTGAGAAGAGAAGGGATTATGTTGTTGCCCTGCTTGATAAGCTGATATTTGAAAATGATT
CTCCTGATGAGCTGTCACCTGCATTTATAAAGGTTGGGCTAATTGAACTTCTGCTGTTTATTATTCGCTGTAAGAATTAT
GAGGAAAATGTTATTAAGGAAATAGATGTGGATAACAGGATTATTCAGGAAGTTGCCACATATATATATGAACATTATGC
AGATAATCTGTCTTTAGAGTATGTTGCAGATAAATTTAATCTTAGCAGGTCATATCTTTCAAAGAAATTTAAGACAGCAA
CCGGATTTGGATTTAAGGAGTACATTATTAATGTAAGAATACAGAACGCCTGTAATCTGCTGCTTGAAACAAACAAATCA
ATTACTGATATTGCATTTGAATGTGGCTTTAATGACAGTAATTATTTTGGAGATGCTTTCAGGAAGGCAAAGGGGATATC
TCCACATAAATACCGTAAGAATGAAACTTTTTAA

Upstream 100 bases:

>100_bases
AAAAAACAGTGATTTCTACAATTAAACGAAAAAATATTGCTAATAATACAGAAAAATTACTATAATAGACGCAAATGTAT
TTGAGATAAGGAGAGATTAT

Downstream 100 bases:

>100_bases
AGGTGCATTTTAAATATTGTACTTGATTTCATACAATATCTTTAATATAATAGTTTTAAAATGGATTTTGTATACAAGGT
TAGGTAATATATGGAAAGTA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: L-rhamnose operon regulatory protein rhaS [H]

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MFQDMSKDFDIKRIKRSNTSCSTGVGAHVHPFNEIFYLSSGECTSFIDHNIYKFGKGDLVIVPSGCLHRTTYNGKGMHER
IVISFRNEATEWIQNQTGKELMENCMKPGVVNIPEKRRDYVVALLDKLIFENDSPDELSPAFIKVGLIELLLFIIRCKNY
EENVIKEIDVDNRIIQEVATYIYEHYADNLSLEYVADKFNLSRSYLSKKFKTATGFGFKEYIINVRIQNACNLLLETNKS
ITDIAFECGFNDSNYFGDAFRKAKGISPHKYRKNETF

Sequences:

>Translated_277_residues
MFQDMSKDFDIKRIKRSNTSCSTGVGAHVHPFNEIFYLSSGECTSFIDHNIYKFGKGDLVIVPSGCLHRTTYNGKGMHER
IVISFRNEATEWIQNQTGKELMENCMKPGVVNIPEKRRDYVVALLDKLIFENDSPDELSPAFIKVGLIELLLFIIRCKNY
EENVIKEIDVDNRIIQEVATYIYEHYADNLSLEYVADKFNLSRSYLSKKFKTATGFGFKEYIINVRIQNACNLLLETNKS
ITDIAFECGFNDSNYFGDAFRKAKGISPHKYRKNETF
>Mature_277_residues
MFQDMSKDFDIKRIKRSNTSCSTGVGAHVHPFNEIFYLSSGECTSFIDHNIYKFGKGDLVIVPSGCLHRTTYNGKGMHER
IVISFRNEATEWIQNQTGKELMENCMKPGVVNIPEKRRDYVVALLDKLIFENDSPDELSPAFIKVGLIELLLFIIRCKNY
EENVIKEIDVDNRIIQEVATYIYEHYADNLSLEYVADKFNLSRSYLSKKFKTATGFGFKEYIINVRIQNACNLLLETNKS
ITDIAFECGFNDSNYFGDAFRKAKGISPHKYRKNETF

Specific function: Activates expression of the rhaBAD and rhaT operons [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=153, Percent_Identity=32.0261437908497, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790391, Length=118, Percent_Identity=34.7457627118644, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788725, Length=262, Percent_Identity=23.2824427480916, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1790559, Length=99, Percent_Identity=35.3535353535354, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI171474011, Length=99, Percent_Identity=30.3030303030303, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 31935; Mature: 31935

Theoretical pI: Translated: 7.14; Mature: 7.14

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFQDMSKDFDIKRIKRSNTSCSTGVGAHVHPFNEIFYLSSGECTSFIDHNIYKFGKGDLV
CCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHCCCEEECCCCEE
IVPSGCLHRTTYNGKGMHERIVISFRNEATEWIQNQTGKELMENCMKPGVVNIPEKRRDY
EECCCCEECCCCCCCCCCEEEEEEECHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHH
VVALLDKLIFENDSPDELSPAFIKVGLIELLLFIIRCKNYEENVIKEIDVDNRIIQEVAT
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHH
YIYEHYADNLSLEYVADKFNLSRSYLSKKFKTATGFGFKEYIINVRIQNACNLLLETNKS
HHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEEEEHHHHHHHHHCCCC
ITDIAFECGFNDSNYFGDAFRKAKGISPHKYRKNETF
HHHEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MFQDMSKDFDIKRIKRSNTSCSTGVGAHVHPFNEIFYLSSGECTSFIDHNIYKFGKGDLV
CCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHCCCEEECCCCEE
IVPSGCLHRTTYNGKGMHERIVISFRNEATEWIQNQTGKELMENCMKPGVVNIPEKRRDY
EECCCCEECCCCCCCCCCEEEEEEECHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHH
VVALLDKLIFENDSPDELSPAFIKVGLIELLLFIIRCKNYEENVIKEIDVDNRIIQEVAT
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHH
YIYEHYADNLSLEYVADKFNLSRSYLSKKFKTATGFGFKEYIINVRIQNACNLLLETNKS
HHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEEEEHHHHHHHHHCCCC
ITDIAFECGFNDSNYFGDAFRKAKGISPHKYRKNETF
HHHEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA