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The map label for this gene is ywcD [H]

Identifier: 238916080

GI number: 238916080

Start: 127956

End: 128456

Strand: Direct

Name: ywcD [H]

Synonym: EUBELI_00113

Alternate gene names: 238916080

Gene position: 127956-128456 (Clockwise)

Preceding gene: 238916079

Following gene: 238916081

Centisome position: 5.97

GC content: 33.73

Gene sequence:

>501_bases
ATGAGTAACAATACAGATAATAATATGCAGGAAACTAAGCCGGATATATTTGATAAGATTATGCATCTGCCGGGTCTGAG
GGTGTTTGAACCATTGTATAAGAAGTATAAGGAAGTGCTTTTATATCTTTTCTTTGGAGTACTTACAACAGTAGTAAGTA
TTGGTTCATATGCGCTCTTTAATGTTGCAATGGGAATTAATGAGCTTATTGCAAATGTTATATCATGGGTACTTGCAGTA
CTTTTTGCATTCTTTACTAACAGGATATGGGTGTTTGCAGCACCAACTAAGACTGTGGAAGAATTTATGAAACAGTTGGT
TTCATTTGCGGGTGGAAGAGTATTAACTCTTGTAATTGAGGAGATAATTCTTCTTGTGTTCATTACAATGCTGCATTTCA
ACAGTATGTTAATAAAGTTTATTGCGCAGGTTGTGGTAATTATACTTAATTATGTTATAAGTAAGCTGCTTGTATTCAGA
AAAGATAAGAGTGAGAAGTAA

Upstream 100 bases:

>100_bases
TTTCAGGACGCCGTTTTTATACGGCGTCTTTTTCTTGATTTGTTATTGATAAAAGTATAAAATAGTGTAGCATTATATTA
ATAAAAACAGTGAGGTAATT

Downstream 100 bases:

>100_bases
AAGGAGAAGGTAATGGAAAAGAATGTATTAGAGTTTCTTGAAAACTCACAGAGAATGTATGGGGAAAAGACAGCGTGTGC
GGACATGAATAATGAACTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 165

Protein sequence:

>166_residues
MSNNTDNNMQETKPDIFDKIMHLPGLRVFEPLYKKYKEVLLYLFFGVLTTVVSIGSYALFNVAMGINELIANVISWVLAV
LFAFFTNRIWVFAAPTKTVEEFMKQLVSFAGGRVLTLVIEEIILLVFITMLHFNSMLIKFIAQVVVIILNYVISKLLVFR
KDKSEK

Sequences:

>Translated_166_residues
MSNNTDNNMQETKPDIFDKIMHLPGLRVFEPLYKKYKEVLLYLFFGVLTTVVSIGSYALFNVAMGINELIANVISWVLAV
LFAFFTNRIWVFAAPTKTVEEFMKQLVSFAGGRVLTLVIEEIILLVFITMLHFNSMLIKFIAQVVVIILNYVISKLLVFR
KDKSEK
>Mature_165_residues
SNNTDNNMQETKPDIFDKIMHLPGLRVFEPLYKKYKEVLLYLFFGVLTTVVSIGSYALFNVAMGINELIANVISWVLAVL
FAFFTNRIWVFAAPTKTVEEFMKQLVSFAGGRVLTLVIEEIILLVFITMLHFNSMLIKFIAQVVVIILNYVISKLLVFRK
DKSEK

Specific function: Unknown

COG id: COG2246

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gtrA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007267 [H]

Pfam domain/function: PF04138 GtrA [H]

EC number: NA

Molecular weight: Translated: 19064; Mature: 18933

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNNTDNNMQETKPDIFDKIMHLPGLRVFEPLYKKYKEVLLYLFFGVLTTVVSIGSYALF
CCCCCCCCHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NVAMGINELIANVISWVLAVLFAFFTNRIWVFAAPTKTVEEFMKQLVSFAGGRVLTLVIE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHH
EIILLVFITMLHFNSMLIKFIAQVVVIILNYVISKLLVFRKDKSEK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SNNTDNNMQETKPDIFDKIMHLPGLRVFEPLYKKYKEVLLYLFFGVLTTVVSIGSYALF
CCCCCCCHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NVAMGINELIANVISWVLAVLFAFFTNRIWVFAAPTKTVEEFMKQLVSFAGGRVLTLVIE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHH
EIILLVFITMLHFNSMLIKFIAQVVVIILNYVISKLLVFRKDKSEK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]