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The map label for this gene is phnR [H]

Identifier: 238897168

GI number: 238897168

Start: 5168206

End: 5168925

Strand: Reverse

Name: phnR [H]

Synonym: KP1_5434

Alternate gene names: 238897168

Gene position: 5168925-5168206 (Counterclockwise)

Preceding gene: 238897171

Following gene: 238897167

Centisome position: 98.48

GC content: 61.11

Gene sequence:

>720_bases
ATGAAATCACCCTCTGGCGAGATGCCGCAATACCTGATGATTAAGGCGCAGCTGCAGGCGCGTATTCAAAACGGCGCCCT
CAAAAGCGGCGACAAGCTGCCTTCCGAGCGCGAGCTGTGCGCGCTGTTCAACACGACGCGGATTACGGTGCGTGAGAGCC
TGGCGCAGCTGGAGGCCAGCGGCGTGATTTACCGCGCCGACCGCCGCGGCTGGTTTGTGACGCCGGAGCGTCTGTGGCTG
GATCCGACGCAAAATACCAACTTCCACAAGCTGTGTCTCGAACAGGGGCGCGAACCGAAAACGGTGCTGCTTGATGGCCG
CCTGGCTGCCGTGCCGCTGGATGTGATGGCGCCGCTGGCGCTGCAGCCCTTCGATCAGGTCTACCTGCTGACCCGGCTGC
GCTATGCCGACGGGCGGCCGGTATGCTACTGCGAAAACCACTGTCTGCCCGCGCGGGTGCCTGAGCTGCTGCGCCACGAT
CTCAACGGCAGTCTGACCGAGATTTATCAAACTCACTACGACCTGATCTATACCAGTATGCATCTGTCGTTTTATCCCAC
CTCAATGCCGCCGCAGGCCGCCGAGGCGCTGGGGGTGATGGAGGGGCGCCCGGCGCTGCTGTTGCGCCGGCTGAATTACG
ATCAGCATGGGCGTATTCTCGATTATGATATCGAATACTGGCGGCATGATAGCCTGCGGATCGAAGTCGATACCCATTGA

Upstream 100 bases:

>100_bases
GGAGACAAAGCCGGGAAAGGGTCAAAGGAAATGTGGCGCTGCAACAAAAAATTCATCTGGCTATGTATAATGAGCGCACG
AAAAGTGGCAGTGAGTAAAC

Downstream 100 bases:

>100_bases
TTTTATTAGTTAAATTTTTTGATCTCCCCGGTGGCGCTAGCGCTTACCGGGGCTACGCATCCCGCTCGTTTTAACTCCTT
CGACACACTTCTTTCATCGT

Product: 2-aminoethylphosphonate transporter repressor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MKSPSGEMPQYLMIKAQLQARIQNGALKSGDKLPSERELCALFNTTRITVRESLAQLEASGVIYRADRRGWFVTPERLWL
DPTQNTNFHKLCLEQGREPKTVLLDGRLAAVPLDVMAPLALQPFDQVYLLTRLRYADGRPVCYCENHCLPARVPELLRHD
LNGSLTEIYQTHYDLIYTSMHLSFYPTSMPPQAAEALGVMEGRPALLLRRLNYDQHGRILDYDIEYWRHDSLRIEVDTH

Sequences:

>Translated_239_residues
MKSPSGEMPQYLMIKAQLQARIQNGALKSGDKLPSERELCALFNTTRITVRESLAQLEASGVIYRADRRGWFVTPERLWL
DPTQNTNFHKLCLEQGREPKTVLLDGRLAAVPLDVMAPLALQPFDQVYLLTRLRYADGRPVCYCENHCLPARVPELLRHD
LNGSLTEIYQTHYDLIYTSMHLSFYPTSMPPQAAEALGVMEGRPALLLRRLNYDQHGRILDYDIEYWRHDSLRIEVDTH
>Mature_239_residues
MKSPSGEMPQYLMIKAQLQARIQNGALKSGDKLPSERELCALFNTTRITVRESLAQLEASGVIYRADRRGWFVTPERLWL
DPTQNTNFHKLCLEQGREPKTVLLDGRLAAVPLDVMAPLALQPFDQVYLLTRLRYADGRPVCYCENHCLPARVPELLRHD
LNGSLTEIYQTHYDLIYTSMHLSFYPTSMPPQAAEALGVMEGRPALLLRRLNYDQHGRILDYDIEYWRHDSLRIEVDTH

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790304, Length=225, Percent_Identity=34.2222222222222, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1788418, Length=227, Percent_Identity=27.3127753303965, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI87082252, Length=233, Percent_Identity=23.6051502145923, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786950, Length=220, Percent_Identity=25.9090909090909, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790118, Length=226, Percent_Identity=22.1238938053097, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR017722
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27524; Mature: 27524

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSPSGEMPQYLMIKAQLQARIQNGALKSGDKLPSERELCALFNTTRITVRESLAQLEAS
CCCCCCCCCHHEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHC
GVIYRADRRGWFVTPERLWLDPTQNTNFHKLCLEQGREPKTVLLDGRLAAVPLDVMAPLA
CEEEEECCCCEEECCHHEEECCCCCCCHHHHHHHCCCCCCEEEECCCEEECCHHHHCCCC
LQPFDQVYLLTRLRYADGRPVCYCENHCLPARVPELLRHDLNGSLTEIYQTHYDLIYTSM
CCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHEEEEE
HLSFYPTSMPPQAAEALGVMEGRPALLLRRLNYDQHGRILDYDIEYWRHDSLRIEVDTH
EEEEECCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCCCEEEEEHHEEECCCEEEEEECC
>Mature Secondary Structure
MKSPSGEMPQYLMIKAQLQARIQNGALKSGDKLPSERELCALFNTTRITVRESLAQLEAS
CCCCCCCCCHHEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHC
GVIYRADRRGWFVTPERLWLDPTQNTNFHKLCLEQGREPKTVLLDGRLAAVPLDVMAPLA
CEEEEECCCCEEECCHHEEECCCCCCCHHHHHHHCCCCCCEEEECCCEEECCHHHHCCCC
LQPFDQVYLLTRLRYADGRPVCYCENHCLPARVPELLRHDLNGSLTEIYQTHYDLIYTSM
CCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHEEEEE
HLSFYPTSMPPQAAEALGVMEGRPALLLRRLNYDQHGRILDYDIEYWRHDSLRIEVDTH
EEEEECCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCCCEEEEEHHEEECCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA