| Definition | Klebsiella pneumoniae NTUH-K2044 chromosome, complete genome. |
|---|---|
| Accession | NC_012731 |
| Length | 5,248,520 |
Click here to switch to the map view.
The map label for this gene is xylA [H]
Identifier: 238897029
GI number: 238897029
Start: 5020985
End: 5022319
Strand: Reverse
Name: xylA [H]
Synonym: KP1_5276
Alternate gene names: 238897029
Gene position: 5022319-5020985 (Counterclockwise)
Preceding gene: 238897030
Following gene: 238897028
Centisome position: 95.69
GC content: 57.0
Gene sequence:
>1335_bases ATGGAGTTCTCTATGCAGACCTATTTCGATCAACTCGATCGCGTTCGTTACGAAGGCCCGAAATCCACTAACCCGCTGGC TTTCCGTCATTACAACCCGGATGAACTGGTGCTGGGCAAACGGATGGAAGATCATCTGCGTTTTGCGGCCTGTTACTGGC ACACCTTCTGCTGGAATGGCGCCGATATGTTTGGCGTGGGCTCCTTTGATCGTCCCTGGCAGCAGCCTGGCGACGCCCTG GAGATGGCCAAACGCAAAGCCGATGTGGCGTTCGAATTCTTCCATAAACTCAACGTGCCTTACTACTGCTTCCACGACGT TGACGTCTCGCCGGAAGGCGCTTCCCTCAAGGAGTACAGCAATAACTTCGCCCGGATGGTCGAGGTGCTGGCTGAGAAAC AGCAGCAGAGCGGCGTGAAGCTTCTGTGGGGGACCGCAAACTGCTTTACCAACCCGCGCTACGGCGCCGGCGCGGCCACC AACCCGGATCCGGAAGTATTTAGCTGGGCGGCCACCCAGGTGGTCACCGCCATGAATGCCACCCATCAACTGGGCGGTGA AAACTATGTGCTGTGGGGCGGTCGCGAGGGCTATGAAACCCTGCTGAATACCGACCTGCGCCAGGAGCGTGAGCAGATTG GCCGCTTTATGCAGCTGGTGGTGGAGCATAAGCATAAAATCGGCTTTAAAGGTACGCTGCTGATTGAGCCCAAACCGCAG GAGCCGACCAAGCATCAGTATGACTATGATGCCTCTACCGTTTACGGCTTCCTCAAACAGTTTGGTCTGGAAAAAGAGAT TAAACTGAATATTGAAGCTAACCATGCCACGCTCGCCGGCCATTCGTTCCATCATGAAATTGCGACGGCCATTGCGCTGG GGCTGTTCGGCTCCGTTGACGCCAACCGCGGCGATCCGCAGCTGGGCTGGGATACCGACCAGTTCCCGAACAGCGTCGAA GAGAACGCGCTGGTGATGTATGAAATCCTCAAAGCGGGCGGCTTCACCACCGGCGGCCTCAACTTTGATGCGAAAGTGCG CCGGCAGAGCACCGACAAATACGATCTGTTCTATGGTCATATTGGCGCGATGGATACCATGGCGCTGTCGCTGAAGGTCG CGGCGCGGATGATCGAGGACGGCGAACTGGATAAGCGCGTGGCCAGACGCTACGCCGGCTGGAACGGTGAGCTGGGGCAG CAGATCCTTAACGGGCAGATGACCCTGAGCGATATTGCCCAGTATGCCGCTCAGCATCAGCTGGCGCCGCAGCATCGCAG CGGCCAGCAGGAACAACTGGAAAACCTGGTCAACCATTATCTGTTTGACAAGTAA
Upstream 100 bases:
>100_bases CTCTTGCTGGTGCCAGCGCCTGGAGGTTCACGCTCTTGCCGCCTTCCTGCAACTCGAATTATTTAGGGTATCTGATTGGT TATTCGCCGCATCTCTGAAT
Downstream 100 bases:
>100_bases TCATACGGCGGTGCCCGGGGTGACCGGCGCCGCAACCAGGATGCTCTGTTCGCGCCACGCTCAGCCGTGGCGCGCGTTTA AGGAGAGGGAGTATGTATAT
Product: xylose isomerase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 444; Mature: 444
Protein sequence:
>444_residues MEFSMQTYFDQLDRVRYEGPKSTNPLAFRHYNPDELVLGKRMEDHLRFAACYWHTFCWNGADMFGVGSFDRPWQQPGDAL EMAKRKADVAFEFFHKLNVPYYCFHDVDVSPEGASLKEYSNNFARMVEVLAEKQQQSGVKLLWGTANCFTNPRYGAGAAT NPDPEVFSWAATQVVTAMNATHQLGGENYVLWGGREGYETLLNTDLRQEREQIGRFMQLVVEHKHKIGFKGTLLIEPKPQ EPTKHQYDYDASTVYGFLKQFGLEKEIKLNIEANHATLAGHSFHHEIATAIALGLFGSVDANRGDPQLGWDTDQFPNSVE ENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALSLKVAARMIEDGELDKRVARRYAGWNGELGQ QILNGQMTLSDIAQYAAQHQLAPQHRSGQQEQLENLVNHYLFDK
Sequences:
>Translated_444_residues MEFSMQTYFDQLDRVRYEGPKSTNPLAFRHYNPDELVLGKRMEDHLRFAACYWHTFCWNGADMFGVGSFDRPWQQPGDAL EMAKRKADVAFEFFHKLNVPYYCFHDVDVSPEGASLKEYSNNFARMVEVLAEKQQQSGVKLLWGTANCFTNPRYGAGAAT NPDPEVFSWAATQVVTAMNATHQLGGENYVLWGGREGYETLLNTDLRQEREQIGRFMQLVVEHKHKIGFKGTLLIEPKPQ EPTKHQYDYDASTVYGFLKQFGLEKEIKLNIEANHATLAGHSFHHEIATAIALGLFGSVDANRGDPQLGWDTDQFPNSVE ENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALSLKVAARMIEDGELDKRVARRYAGWNGELGQ QILNGQMTLSDIAQYAAQHQLAPQHRSGQQEQLENLVNHYLFDK >Mature_444_residues MEFSMQTYFDQLDRVRYEGPKSTNPLAFRHYNPDELVLGKRMEDHLRFAACYWHTFCWNGADMFGVGSFDRPWQQPGDAL EMAKRKADVAFEFFHKLNVPYYCFHDVDVSPEGASLKEYSNNFARMVEVLAEKQQQSGVKLLWGTANCFTNPRYGAGAAT NPDPEVFSWAATQVVTAMNATHQLGGENYVLWGGREGYETLLNTDLRQEREQIGRFMQLVVEHKHKIGFKGTLLIEPKPQ EPTKHQYDYDASTVYGFLKQFGLEKEIKLNIEANHATLAGHSFHHEIATAIALGLFGSVDANRGDPQLGWDTDQFPNSVE ENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALSLKVAARMIEDGELDKRVARRYAGWNGELGQ QILNGQMTLSDIAQYAAQHQLAPQHRSGQQEQLENLVNHYLFDK
Specific function: Unknown
COG id: COG2115
COG function: function code G; Xylose isomerase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the xylose isomerase family [H]
Homologues:
Organism=Escherichia coli, GI1789988, Length=440, Percent_Identity=90.4545454545455, Blast_Score=857, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013022 - InterPro: IPR012307 - InterPro: IPR013452 - InterPro: IPR001998 [H]
Pfam domain/function: PF01261 AP_endonuc_2 [H]
EC number: =5.3.1.5 [H]
Molecular weight: Translated: 50376; Mature: 50376
Theoretical pI: Translated: 5.94; Mature: 5.94
Prosite motif: PS00172 XYLOSE_ISOMERASE_1 ; PS00173 XYLOSE_ISOMERASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEFSMQTYFDQLDRVRYEGPKSTNPLAFRHYNPDELVLGKRMEDHLRFAACYWHTFCWNG CCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCC ADMFGVGSFDRPWQQPGDALEMAKRKADVAFEFFHKLNVPYYCFHDVDVSPEGASLKEYS CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHH NNFARMVEVLAEKQQQSGVKLLWGTANCFTNPRYGAGAATNPDPEVFSWAATQVVTAMNA HHHHHHHHHHHHHHHHCCCEEEEECHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH THQLGGENYVLWGGREGYETLLNTDLRQEREQIGRFMQLVVEHKHKIGFKGTLLIEPKPQ HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC EPTKHQYDYDASTVYGFLKQFGLEKEIKLNIEANHATLAGHSFHHEIATAIALGLFGSVD CCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCEEECCCHHHHHHHHHHHHHHHCCCC ANRGDPQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGH CCCCCCCCCCCCHHCCCCHHHCHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCEEEEEEC IGAMDTMALSLKVAARMIEDGELDKRVARRYAGWNGELGQQILNGQMTLSDIAQYAAQHQ CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHC LAPQHRSGQQEQLENLVNHYLFDK CCCCCCCCCHHHHHHHHHHHHCCC >Mature Secondary Structure MEFSMQTYFDQLDRVRYEGPKSTNPLAFRHYNPDELVLGKRMEDHLRFAACYWHTFCWNG CCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCC ADMFGVGSFDRPWQQPGDALEMAKRKADVAFEFFHKLNVPYYCFHDVDVSPEGASLKEYS CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHH NNFARMVEVLAEKQQQSGVKLLWGTANCFTNPRYGAGAATNPDPEVFSWAATQVVTAMNA HHHHHHHHHHHHHHHHCCCEEEEECHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH THQLGGENYVLWGGREGYETLLNTDLRQEREQIGRFMQLVVEHKHKIGFKGTLLIEPKPQ HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC EPTKHQYDYDASTVYGFLKQFGLEKEIKLNIEANHATLAGHSFHHEIATAIALGLFGSVD CCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCEEECCCHHHHHHHHHHHHHHHCCCC ANRGDPQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGH CCCCCCCCCCCCHHCCCCHHHCHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCEEEEEEC IGAMDTMALSLKVAARMIEDGELDKRVARRYAGWNGELGQQILNGQMTLSDIAQYAAQHQ CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHC LAPQHRSGQQEQLENLVNHYLFDK CCCCCCCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA