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The map label for this gene is ydiF [H]

Identifier: 238897020

GI number: 238897020

Start: 5011402

End: 5013021

Strand: Reverse

Name: ydiF [H]

Synonym: KP1_5267

Alternate gene names: 238897020

Gene position: 5013021-5011402 (Counterclockwise)

Preceding gene: 238897021

Following gene: 238897016

Centisome position: 95.51

GC content: 63.64

Gene sequence:

>1620_bases
ATGGCTCATTGCGCCCACATCCCCGCTTTTGTTTTACATCAGGTCACCTGTCAGTTTGCGACGGGACAGACCCTGTTTGG
TCCGCTCAGCGTCTCGCTGGAACCGTCCCTTTGCGGCCTGGTCGGCCGGAACGGCGTCGGCAAGACGCGTCTGCTGCGTC
TGCTGGCGGGCCTTGATTCTCCTGCCGGCGGCCATATTGAGCGCGCCGCCGCCGTTGCCTGGGTAGCGCAGCAGCCGACG
CTCACGCCGGAGACCACCCTCGCTACGCTGCTGGGCTATGCGTCGGTTTTTGCCGCCTTGTCTCGCCTTGAACAGGGCCA
AGGGCTGGCCGACGATTTCGAGCTGTTAGATGGTCACTGGGATCTCACCGATCGCCTGAGTTTAGCGTTCCGTGAAGCCG
ATCTCCCGCCGTTCTCTGCCGATCGCCCCGCGTTTTCACTCAGCGGCGGCGAGCGGATGAAGGCTCTGCTGTGCGGCGCC
TTCGTCTCGGGCGCCGATTATCTGCTGCTGGATGAGCCTACCAACCATCTGGACCGCCAGGGGCGGGAGTGGCTCTATCA
CCAACTGGAAAGCTGGCAGGGCGGGGCTCTGATCGCCAGCCACGACCGCGAGCTGCTGACGCGGATGCCGAGGATAATTG
AGCTGACGCCGACGGCGCTGCGCAGCTACGGCGGCAACTATGATGAATATCAGCGCCAGCGTATGGCGGAGCAGCAGGCC
GCGCGCGCGGCGCTGGAGCATGCCGTGACCGACCGACGGCGCACCCGCGCGCGAATGCATAAGGAGCATGACGCCGCCCA
GCGGCGCTCGGCTCAGACGCTGCGTACCGTTGATACGCTAAATATCGCCTCCTTCGAACGCGTGAAGTACAAAGGCGCGG
CAAAAGAGCGCCCGGGAACGCTGCGCCGTCAGCATCGTGAACAGAACAGCAGTCTGAATGCCGCCGTGCAGCAGGCGCGG
GAGCGGGTTGAGGAAGAGACCCCAGTGATGTTTACCCTGCCGGGTAGCGAAGTGGCCGCCGGCAAGCAGGTGCTGGTGGT
GGAGTCATTACAGCTCGACCATGCTCCGGCTGCGCCGCTGAACTGGCGTATCGATGGCCCGATGCGCATCGCGCTAAAGG
GGCCAAACGGCTGTGGCAAAACCACTTTGCTGAAAACGCTGTTGGGGCTGGAGCAGGCCGCGTCAGGCGATGTCCGGCTT
TCGGTGAGCGCCGCTTACCTCGATCAACATCTGACGCAGCTGGATTTATCCCTGTCGGTAATGGCGCACCTGAGCCTGGA
AGATACCCCACTGGATGAGGGCCTCCTGCGCACCCGCCTGGCGCAGCTCCAGCTGGGCGCGGATAAGGTCACTCTGCCGC
TGTCGGCGCTCAGCGGCGGCGAGCGCCTGAAAGCGGCGCTGGCGTGCGTGCTCTGGCGACGCGAGCCTGCCCAGCTGCTT
TTGTTGGATGAGCCAACCAACCATCTCGATTTAGCATCGACGCAGGCTATTGAAAGCGCGCTGGCGGCGTTTCCCGGCGC
GATGCTGGTGGTGTCGCATGATGAGGCGTTTTTACAAGGTCTGAAGCTGACCCATAGTCTGGCGTGGCGGGAGACGAGCT
GGCACTTTTCCCTGCTTTGA

Upstream 100 bases:

>100_bases
GGAGCGCGCCCCACAAATGAACAAACACGACTGATGAATTTCACGCCTTACCTCGCAGACGTTGCGGGTAGGGGAGTATT
GATTTCATTCAGGAGTGCTT

Downstream 100 bases:

>100_bases
ATGCCCGGTAGCCGCCATCTTATGCTGGCGGCTACTGGCGACAGATAAAAAAATCCCCGCCATCAGGCAGGGATTCTCGA
TTCTTAGCGGCTTGAACTTA

Product: ABC transport system ATP-binding component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 539; Mature: 538

Protein sequence:

>539_residues
MAHCAHIPAFVLHQVTCQFATGQTLFGPLSVSLEPSLCGLVGRNGVGKTRLLRLLAGLDSPAGGHIERAAAVAWVAQQPT
LTPETTLATLLGYASVFAALSRLEQGQGLADDFELLDGHWDLTDRLSLAFREADLPPFSADRPAFSLSGGERMKALLCGA
FVSGADYLLLDEPTNHLDRQGREWLYHQLESWQGGALIASHDRELLTRMPRIIELTPTALRSYGGNYDEYQRQRMAEQQA
ARAALEHAVTDRRRTRARMHKEHDAAQRRSAQTLRTVDTLNIASFERVKYKGAAKERPGTLRRQHREQNSSLNAAVQQAR
ERVEEETPVMFTLPGSEVAAGKQVLVVESLQLDHAPAAPLNWRIDGPMRIALKGPNGCGKTTLLKTLLGLEQAASGDVRL
SVSAAYLDQHLTQLDLSLSVMAHLSLEDTPLDEGLLRTRLAQLQLGADKVTLPLSALSGGERLKAALACVLWRREPAQLL
LLDEPTNHLDLASTQAIESALAAFPGAMLVVSHDEAFLQGLKLTHSLAWRETSWHFSLL

Sequences:

>Translated_539_residues
MAHCAHIPAFVLHQVTCQFATGQTLFGPLSVSLEPSLCGLVGRNGVGKTRLLRLLAGLDSPAGGHIERAAAVAWVAQQPT
LTPETTLATLLGYASVFAALSRLEQGQGLADDFELLDGHWDLTDRLSLAFREADLPPFSADRPAFSLSGGERMKALLCGA
FVSGADYLLLDEPTNHLDRQGREWLYHQLESWQGGALIASHDRELLTRMPRIIELTPTALRSYGGNYDEYQRQRMAEQQA
ARAALEHAVTDRRRTRARMHKEHDAAQRRSAQTLRTVDTLNIASFERVKYKGAAKERPGTLRRQHREQNSSLNAAVQQAR
ERVEEETPVMFTLPGSEVAAGKQVLVVESLQLDHAPAAPLNWRIDGPMRIALKGPNGCGKTTLLKTLLGLEQAASGDVRL
SVSAAYLDQHLTQLDLSLSVMAHLSLEDTPLDEGLLRTRLAQLQLGADKVTLPLSALSGGERLKAALACVLWRREPAQLL
LLDEPTNHLDLASTQAIESALAAFPGAMLVVSHDEAFLQGLKLTHSLAWRETSWHFSLL
>Mature_538_residues
AHCAHIPAFVLHQVTCQFATGQTLFGPLSVSLEPSLCGLVGRNGVGKTRLLRLLAGLDSPAGGHIERAAAVAWVAQQPTL
TPETTLATLLGYASVFAALSRLEQGQGLADDFELLDGHWDLTDRLSLAFREADLPPFSADRPAFSLSGGERMKALLCGAF
VSGADYLLLDEPTNHLDRQGREWLYHQLESWQGGALIASHDRELLTRMPRIIELTPTALRSYGGNYDEYQRQRMAEQQAA
RAALEHAVTDRRRTRARMHKEHDAAQRRSAQTLRTVDTLNIASFERVKYKGAAKERPGTLRRQHREQNSSLNAAVQQARE
RVEEETPVMFTLPGSEVAAGKQVLVVESLQLDHAPAAPLNWRIDGPMRIALKGPNGCGKTTLLKTLLGLEQAASGDVRLS
VSAAYLDQHLTQLDLSLSVMAHLSLEDTPLDEGLLRTRLAQLQLGADKVTLPLSALSGGERLKAALACVLWRREPAQLLL
LDEPTNHLDLASTQAIESALAAFPGAMLVVSHDEAFLQGLKLTHSLAWRETSWHFSLL

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=509, Percent_Identity=27.5049115913556, Blast_Score=142, Evalue=1e-33,
Organism=Homo sapiens, GI10947137, Length=509, Percent_Identity=28.4872298624754, Blast_Score=142, Evalue=1e-33,
Organism=Homo sapiens, GI27881506, Length=509, Percent_Identity=28.4872298624754, Blast_Score=141, Evalue=2e-33,
Organism=Homo sapiens, GI10947135, Length=522, Percent_Identity=27.5862068965517, Blast_Score=115, Evalue=1e-25,
Organism=Homo sapiens, GI69354671, Length=522, Percent_Identity=27.5862068965517, Blast_Score=115, Evalue=2e-25,
Organism=Escherichia coli, GI1789751, Length=513, Percent_Identity=33.5282651072125, Blast_Score=181, Evalue=1e-46,
Organism=Escherichia coli, GI2367384, Length=556, Percent_Identity=30.0359712230216, Blast_Score=172, Evalue=4e-44,
Organism=Escherichia coli, GI1787182, Length=522, Percent_Identity=31.992337164751, Blast_Score=171, Evalue=8e-44,
Organism=Escherichia coli, GI1787041, Length=547, Percent_Identity=28.3363802559415, Blast_Score=150, Evalue=2e-37,
Organism=Caenorhabditis elegans, GI17555318, Length=500, Percent_Identity=28.2, Blast_Score=151, Evalue=8e-37,
Organism=Caenorhabditis elegans, GI17553372, Length=517, Percent_Identity=29.0135396518375, Blast_Score=148, Evalue=9e-36,
Organism=Caenorhabditis elegans, GI17559834, Length=528, Percent_Identity=27.8409090909091, Blast_Score=144, Evalue=1e-34,
Organism=Saccharomyces cerevisiae, GI6320874, Length=513, Percent_Identity=27.2904483430799, Blast_Score=122, Evalue=1e-28,
Organism=Saccharomyces cerevisiae, GI6321121, Length=563, Percent_Identity=26.1101243339254, Blast_Score=112, Evalue=1e-25,
Organism=Saccharomyces cerevisiae, GI6324314, Length=196, Percent_Identity=31.6326530612245, Blast_Score=77, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6323278, Length=153, Percent_Identity=30.0653594771242, Blast_Score=74, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24666836, Length=521, Percent_Identity=30.1343570057582, Blast_Score=161, Evalue=1e-39,
Organism=Drosophila melanogaster, GI24642252, Length=505, Percent_Identity=29.3069306930693, Blast_Score=155, Evalue=5e-38,
Organism=Drosophila melanogaster, GI18859989, Length=505, Percent_Identity=29.3069306930693, Blast_Score=155, Evalue=5e-38,
Organism=Drosophila melanogaster, GI24641342, Length=514, Percent_Identity=28.4046692607004, Blast_Score=137, Evalue=2e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 59057; Mature: 58926

Theoretical pI: Translated: 6.83; Mature: 6.83

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHCAHIPAFVLHQVTCQFATGQTLFGPLSVSLEPSLCGLVGRNGVGKTRLLRLLAGLDS
CCCCHHHHHHHHHHHHHHHCCCCEEECCEEEEECCHHHHHHCCCCCCHHHHHHHHHCCCC
PAGGHIERAAAVAWVAQQPTLTPETTLATLLGYASVFAALSRLEQGQGLADDFELLDGHW
CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCC
DLTDRLSLAFREADLPPFSADRPAFSLSGGERMKALLCGAFVSGADYLLLDEPTNHLDRQ
CHHHHHHHHHHHCCCCCCCCCCCCEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHH
GREWLYHQLESWQGGALIASHDRELLTRMPRIIELTPTALRSYGGNYDEYQRQRMAEQQA
HHHHHHHHHHCCCCCEEEECCCHHHHHHCCCEEEECHHHHHHCCCCHHHHHHHHHHHHHH
ARAALEHAVTDRRRTRARMHKEHDAAQRRSAQTLRTVDTLNIASFERVKYKGAAKERPGT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCH
LRRQHREQNSSLNAAVQQARERVEEETPVMFTLPGSEVAAGKQVLVVESLQLDHAPAAPL
HHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCCCHHCCCEEEEEEEECCCCCCCCCC
NWRIDGPMRIALKGPNGCGKTTLLKTLLGLEQAASGDVRLSVSAAYLDQHLTQLDLSLSV
EEEECCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHH
MAHLSLEDTPLDEGLLRTRLAQLQLGADKVTLPLSALSGGERLKAALACVLWRREPAQLL
HEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEHHHCCCHHHHHHHHHHHHHCCCCCEEE
LLDEPTNHLDLASTQAIESALAAFPGAMLVVSHDEAFLQGLKLTHSLAWRETSWHFSLL
EEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEECC
>Mature Secondary Structure 
AHCAHIPAFVLHQVTCQFATGQTLFGPLSVSLEPSLCGLVGRNGVGKTRLLRLLAGLDS
CCCHHHHHHHHHHHHHHHCCCCEEECCEEEEECCHHHHHHCCCCCCHHHHHHHHHCCCC
PAGGHIERAAAVAWVAQQPTLTPETTLATLLGYASVFAALSRLEQGQGLADDFELLDGHW
CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCC
DLTDRLSLAFREADLPPFSADRPAFSLSGGERMKALLCGAFVSGADYLLLDEPTNHLDRQ
CHHHHHHHHHHHCCCCCCCCCCCCEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHH
GREWLYHQLESWQGGALIASHDRELLTRMPRIIELTPTALRSYGGNYDEYQRQRMAEQQA
HHHHHHHHHHCCCCCEEEECCCHHHHHHCCCEEEECHHHHHHCCCCHHHHHHHHHHHHHH
ARAALEHAVTDRRRTRARMHKEHDAAQRRSAQTLRTVDTLNIASFERVKYKGAAKERPGT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCH
LRRQHREQNSSLNAAVQQARERVEEETPVMFTLPGSEVAAGKQVLVVESLQLDHAPAAPL
HHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCCCHHCCCEEEEEEEECCCCCCCCCC
NWRIDGPMRIALKGPNGCGKTTLLKTLLGLEQAASGDVRLSVSAAYLDQHLTQLDLSLSV
EEEECCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHH
MAHLSLEDTPLDEGLLRTRLAQLQLGADKVTLPLSALSGGERLKAALACVLWRREPAQLL
HEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEHHHCCCHHHHHHHHHHHHHCCCCCEEE
LLDEPTNHLDLASTQAIESALAAFPGAMLVVSHDEAFLQGLKLTHSLAWRETSWHFSLL
EEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]