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The map label for this gene is yhbU [H]

Identifier: 238896665

GI number: 238896665

Start: 4641534

End: 4642529

Strand: Direct

Name: yhbU [H]

Synonym: KP1_4873

Alternate gene names: 238896665

Gene position: 4641534-4642529 (Clockwise)

Preceding gene: 238896662

Following gene: 238896666

Centisome position: 88.44

GC content: 59.84

Gene sequence:

>996_bases
ATGGAGCTGCTCTGCCCAGCCGGTAACCTTCCGGCGCTTAAGGCGGCCATCGAAAACGGCGCCGATGCCGTCTATATCGG
GCTGAAAGATGATACCAACGCCCGCCACTTTGCCGGCCTTAATTTCACCGAAAAGAAACTGCAGGAAGCCGTCAGCTTTG
TGCATCAGCACCGTCGTAAGCTGCATATCGCCATCAATACCTTCGCTCATCCCGACGGCTACGCCCGCTGGCAGCGAGCA
GTGGATATGGCCGCTCAACTGGGCGCCGATGCGCTCATTCTGGCCGATATCGCCATGCTGGAGTACGCTGCGGAACGTTA
CCCACACATTGAGCGTCACGTTTCGGTGCAGGCTTCCGCCACCAATGAAGAGGCCATTCGCTTCTATCATCGCAACTTCG
ACGTCGCGCGCGTCGTACTGCCGCGCGTGTTGTCTATTCATCAGGTGAAACAGTTGGCCCGCGCCACGCCGGTGCCGCTG
GAAGTCTTCGCCTTCGGCAGCCTGTGCATCATGGCGGAAGGCCGCTGCTATCTCTCTTCCTACCTGACCGGCGAATCGCC
CAACACCGTCGGCGCCTGTTCGCCTGCCCGCTTCGTACGCTGGCAGCAAACGCCGCAGGGGCTGGAATCGCGTCTCAATG
AAGTGCTGATTGACCGTTATCAGGATGGCGAAAATGCCGGTTATCCGACGCTGTGCAAAGGCCGCTACCTGGTTGATGGC
GAGCGCTATCACGCGCTGGAGGAGCCCACCAGCCTCAACACCCTGGAACTGTTGCCGGAATTGATGGCCGCCAATATCGC
CTCGGTGAAAATCGAAGGCCGTCAGCGCAGCCCGGCTTACGTGACCCAGGTGGCGAAAGTCTGGCGCCAGGCGATCGATC
GCTGCAAAGCCGATCCGCAGAATTTCGTACCGCAGTCCGCCTGGATGGAGATCCTGGGCGCCATGTCCGAGGGGACACAA
ACTACCCTTGGCGCTTATCACCGTAAATGGCAGTGA

Upstream 100 bases:

>100_bases
TAACTGCCTCAAATCAAAAATTGTCACCAGAAGGTTAACTAAAATCCCTGCTCGTTAACCATTCAGCGTCCCTGACGGGC
CGCATTTTTCAGGAAAAATT

Downstream 100 bases:

>100_bases
GAAACATGAAATATTCATTAGGGCCGGTGCTGTACTACTGGCCAAAAGAGACGCTGGAAGATTTTTACCAGCAGGCGGCA
AACTGCAGCGCCGACACCAT

Product: putative collagenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTEKKLQEAVSFVHQHRRKLHIAINTFAHPDGYARWQRA
VDMAAQLGADALILADIAMLEYAAERYPHIERHVSVQASATNEEAIRFYHRNFDVARVVLPRVLSIHQVKQLARATPVPL
EVFAFGSLCIMAEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGLESRLNEVLIDRYQDGENAGYPTLCKGRYLVDG
ERYHALEEPTSLNTLELLPELMAANIASVKIEGRQRSPAYVTQVAKVWRQAIDRCKADPQNFVPQSAWMEILGAMSEGTQ
TTLGAYHRKWQ

Sequences:

>Translated_331_residues
MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTEKKLQEAVSFVHQHRRKLHIAINTFAHPDGYARWQRA
VDMAAQLGADALILADIAMLEYAAERYPHIERHVSVQASATNEEAIRFYHRNFDVARVVLPRVLSIHQVKQLARATPVPL
EVFAFGSLCIMAEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGLESRLNEVLIDRYQDGENAGYPTLCKGRYLVDG
ERYHALEEPTSLNTLELLPELMAANIASVKIEGRQRSPAYVTQVAKVWRQAIDRCKADPQNFVPQSAWMEILGAMSEGTQ
TTLGAYHRKWQ
>Mature_331_residues
MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTEKKLQEAVSFVHQHRRKLHIAINTFAHPDGYARWQRA
VDMAAQLGADALILADIAMLEYAAERYPHIERHVSVQASATNEEAIRFYHRNFDVARVVLPRVLSIHQVKQLARATPVPL
EVFAFGSLCIMAEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGLESRLNEVLIDRYQDGENAGYPTLCKGRYLVDG
ERYHALEEPTSLNTLELLPELMAANIASVKIEGRQRSPAYVTQVAKVWRQAIDRCKADPQNFVPQSAWMEILGAMSEGTQ
TTLGAYHRKWQ

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI1789548, Length=331, Percent_Identity=97.2809667673716, Blast_Score=678, Evalue=0.0,
Organism=Escherichia coli, GI1788397, Length=321, Percent_Identity=28.9719626168224, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI87081910, Length=293, Percent_Identity=33.1058020477816, Blast_Score=117, Evalue=8e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001539 [H]

Pfam domain/function: PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 37019; Mature: 37019

Theoretical pI: Translated: 7.32; Mature: 7.32

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTEKKLQEAVSFVHQHRRK
CCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHE
LHIAINTFAHPDGYARWQRAVDMAAQLGADALILADIAMLEYAAERYPHIERHVSVQASA
EEEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHEEEEECC
TNEEAIRFYHRNFDVARVVLPRVLSIHQVKQLARATPVPLEVFAFGSLCIMAEGRCYLSS
CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHCCEEEEECCCHHHHH
YLTGESPNTVGACSPARFVRWQQTPQGLESRLNEVLIDRYQDGENAGYPTLCKGRYLVDG
HHCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCEEECC
ERYHALEEPTSLNTLELLPELMAANIASVKIEGRQRSPAYVTQVAKVWRQAIDRCKADPQ
HHHHHCCCCCCCCHHHHHHHHHHCCHHEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCHH
NFVPQSAWMEILGAMSEGTQTTLGAYHRKWQ
HCCCHHHHHHHHHHHCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTEKKLQEAVSFVHQHRRK
CCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHE
LHIAINTFAHPDGYARWQRAVDMAAQLGADALILADIAMLEYAAERYPHIERHVSVQASA
EEEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHEEEEECC
TNEEAIRFYHRNFDVARVVLPRVLSIHQVKQLARATPVPLEVFAFGSLCIMAEGRCYLSS
CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHCCEEEEECCCHHHHH
YLTGESPNTVGACSPARFVRWQQTPQGLESRLNEVLIDRYQDGENAGYPTLCKGRYLVDG
HHCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCEEECC
ERYHALEEPTSLNTLELLPELMAANIASVKIEGRQRSPAYVTQVAKVWRQAIDRCKADPQ
HHHHHCCCCCCCCHHHHHHHHHHCCHHEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCHH
NFVPQSAWMEILGAMSEGTQTTLGAYHRKWQ
HCCCHHHHHHHHHHHCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]