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The map label for this gene is yqjA [H]

Identifier: 238896620

GI number: 238896620

Start: 4604385

End: 4605047

Strand: Direct

Name: yqjA [H]

Synonym: KP1_4821

Alternate gene names: 238896620

Gene position: 4604385-4605047 (Clockwise)

Preceding gene: 238896619

Following gene: 238896621

Centisome position: 87.73

GC content: 54.45

Gene sequence:

>663_bases
ATGGAACTATTTACCCAGTTATTGAATGCCTTGTGGGCTCAGGATTACGAAACGCTCGCGAATCCCTCCATGATAGGCAT
GCTGTATTTTGTCTTGTTTATGATTTTGTTCCTTGAGAACGGGTTATTGCCTGCCGCGTTTTTACCGGGGGATAGTCTGC
TCGTGCTCGTGGGCGTGCTGATCGCCAAAGGGGCGATGGGTTTTCCGGAAACTTTGCTGCTGCTCACCGCCGCCGCCAGC
CTCGGCTGCTGGCTAAGCTATATTCAGGGGCGTTGGCTGGGTAATACGCGGATCGTGCAAAACTGGCTGTCACACCTACC
TTCGCACTATCACCAGCGTGCGCATCACTTGTTTCATAAGCATGGGCTCTCCGCGCTGCTGATCGGCCGCTTTATCGCCT
TCGTACGCACGCTGCTGCCCACCATCGCCGGGCTTTCCGGCCTTAATAACGCCCGTTTTCAGTTTTTCAACTGGATGAGC
GGCCTGCTGTGGGTGCTCATCCTGACCTCGCTTGGCTATCTGCTGGGTAAAACCCCGGTATTCCTCAAGTATGAAGATCA
GCTGATGTCCTGCCTGATGCTCCTGCCGGTTGCCCTGTTGGTCTTCGGACTGATCGGCTCGCTGGTGGTACTGTGGAAGA
AAAAATACAGAAGCCGGGGCTAA

Upstream 100 bases:

>100_bases
TTCAGAGCGCCTAAGCAGCGACCATAATCTCATAAAAATCTTGTCGCCCTATATGCCGCGCGCTCAGACGTGCCGTTAAC
CGATGTACCAGGAATCGTGA

Downstream 100 bases:

>100_bases
TGATGGTCATGAAACGCCCTTCCCTGCGCCAGTTCAGCTGGCTGCTGGGTGGTTCTCTTCTGCTCGGCGCCCTGTTCTGG
CTTTGGCTGGCGGTGCAGCA

Product: putative integral membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MELFTQLLNALWAQDYETLANPSMIGMLYFVLFMILFLENGLLPAAFLPGDSLLVLVGVLIAKGAMGFPETLLLLTAAAS
LGCWLSYIQGRWLGNTRIVQNWLSHLPSHYHQRAHHLFHKHGLSALLIGRFIAFVRTLLPTIAGLSGLNNARFQFFNWMS
GLLWVLILTSLGYLLGKTPVFLKYEDQLMSCLMLLPVALLVFGLIGSLVVLWKKKYRSRG

Sequences:

>Translated_220_residues
MELFTQLLNALWAQDYETLANPSMIGMLYFVLFMILFLENGLLPAAFLPGDSLLVLVGVLIAKGAMGFPETLLLLTAAAS
LGCWLSYIQGRWLGNTRIVQNWLSHLPSHYHQRAHHLFHKHGLSALLIGRFIAFVRTLLPTIAGLSGLNNARFQFFNWMS
GLLWVLILTSLGYLLGKTPVFLKYEDQLMSCLMLLPVALLVFGLIGSLVVLWKKKYRSRG
>Mature_220_residues
MELFTQLLNALWAQDYETLANPSMIGMLYFVLFMILFLENGLLPAAFLPGDSLLVLVGVLIAKGAMGFPETLLLLTAAAS
LGCWLSYIQGRWLGNTRIVQNWLSHLPSHYHQRAHHLFHKHGLSALLIGRFIAFVRTLLPTIAGLSGLNNARFQFFNWMS
GLLWVLILTSLGYLLGKTPVFLKYEDQLMSCLMLLPVALLVFGLIGSLVVLWKKKYRSRG

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1789481, Length=220, Percent_Identity=92.2727272727273, Blast_Score=386, Evalue=1e-109,
Organism=Escherichia coli, GI1789384, Length=216, Percent_Identity=62.5, Blast_Score=268, Evalue=2e-73,
Organism=Escherichia coli, GI1788656, Length=154, Percent_Identity=33.7662337662338, Blast_Score=93, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 24707; Mature: 24707

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELFTQLLNALWAQDYETLANPSMIGMLYFVLFMILFLENGLLPAAFLPGDSLLVLVGVL
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHCCCCHHHHHHHHH
IAKGAMGFPETLLLLTAAASLGCWLSYIQGRWLGNTRIVQNWLSHLPSHYHQRAHHLFHK
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
HGLSALLIGRFIAFVRTLLPTIAGLSGLNNARFQFFNWMSGLLWVLILTSLGYLLGKTPV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
FLKYEDQLMSCLMLLPVALLVFGLIGSLVVLWKKKYRSRG
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MELFTQLLNALWAQDYETLANPSMIGMLYFVLFMILFLENGLLPAAFLPGDSLLVLVGVL
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHCCCCHHHHHHHHH
IAKGAMGFPETLLLLTAAASLGCWLSYIQGRWLGNTRIVQNWLSHLPSHYHQRAHHLFHK
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
HGLSALLIGRFIAFVRTLLPTIAGLSGLNNARFQFFNWMSGLLWVLILTSLGYLLGKTPV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
FLKYEDQLMSCLMLLPVALLVFGLIGSLVVLWKKKYRSRG
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]