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The map label for this gene is xylF [H]

Identifier: 238896487

GI number: 238896487

Start: 4466933

End: 4467979

Strand: Direct

Name: xylF [H]

Synonym: KP1_4667

Alternate gene names: 238896487

Gene position: 4466933-4467979 (Clockwise)

Preceding gene: 238896486

Following gene: 238896488

Centisome position: 85.11

GC content: 58.45

Gene sequence:

>1047_bases
ATGAATTACCGTAATATTTTTATCACACTCGCCGCACTATCCGGCACCGTCACGGCTTCAGCCTGGTCTGCAGAGTCCGC
CACCGTGGCCTTTTTAATGCCCGATCAGGCCTCTACCCGCTATGAACAGCACGACTTCCCCGGTTTTAAGGCGGAAATGA
GCAAGCTTTGCGCGGATTGTAAGGTCATCTATCAGAATGCCAACGCCAACGCGTCGCTCCAGCAGCAGCAGTTCAACTCG
GTTATCGCCCAGGGGGCGAAAGTGATCGTCCTGGATCCGGTTGACTCTTCCGCCGCCGCCGCGCTGGTCGAAAACGCCCA
AGCGCAGGGGGTCAAGGTCATTGCCTATGATCGCCCGGTACCAGACAAACCGGCTGATTTCTACGTCTCATTTGATAACG
AGGGCATTGGCTACGCCATCGCAAAATCTCTTACCGACCATCTGAAAGCGAGCGGCGTGCCGCAGGATGCCGGCGTGCTG
CAAATTAACGGTTCGCCAACCGATGCCGCCGCAGGGCTGATCCGCGACGGTATCCATCGCGGATTGAAAGAGTCCGGTTA
CAAAACGTTGGCCGAATTCGACACCCCGGAGTGGGCGCCGCCGAAAGCCCAGGAGTGGACCGCCGGGCAGGTTACCCGCT
TTGGCGACAAAATTAAGGGCGTGGTCGCGGCAAACGACGGTACCGGCGGCGGCGCAATTGCCGCCTTTAAGGCTGCCGGC
GTCCAGCCGCTGCCGCCGGTCACCGGCAATGACGCCACTATCGCCGCGCTGCAGCTGATCATCGCTGGCGATCAGTACAA
CACCATCTCCAAGCCATCGGAGATCGTCGCCGCGGCGGCGGCCAAAGTGGCGGTTGATTTTATCCAGGGCAAAAAACCGC
AGGCCAGCACCACCCTGTACAACACCCCTTCCCAGCTATTTACCCCGGAAGTGGTGACGGCCAAAAACATCAAAGCGGAA
ATCTTCGATAAAAAAATCCAGACCTGGGATCAGGTGTGTAGCGGCGAGTACGCCGCCGCCTGCCAGAAGTTAGGCATCAG
CAAGTAA

Upstream 100 bases:

>100_bases
CGTATCCTACATGTGAATTATTGGTAACTCTGATTAAAAAAGTCTCTGTAACGTCGGCGCAACCCGGCGGGCTTAAGCCT
ATAAAAAAGATGGTAACACA

Downstream 100 bases:

>100_bases
CTTTTGCCCCTGCGCCCGCCGCGGCGGGCGCGATTTCGCCATTATTGAGGTCGTTTTGTATGCCGCAACAACAACACAAC
TCCGCCGCCGGGCGGCCAAT

Product: ABC-type xylose transport system periplasmic component

Products: ADP; phosphate; xylose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
MNYRNIFITLAALSGTVTASAWSAESATVAFLMPDQASTRYEQHDFPGFKAEMSKLCADCKVIYQNANANASLQQQQFNS
VIAQGAKVIVLDPVDSSAAAALVENAQAQGVKVIAYDRPVPDKPADFYVSFDNEGIGYAIAKSLTDHLKASGVPQDAGVL
QINGSPTDAAAGLIRDGIHRGLKESGYKTLAEFDTPEWAPPKAQEWTAGQVTRFGDKIKGVVAANDGTGGGAIAAFKAAG
VQPLPPVTGNDATIAALQLIIAGDQYNTISKPSEIVAAAAAKVAVDFIQGKKPQASTTLYNTPSQLFTPEVVTAKNIKAE
IFDKKIQTWDQVCSGEYAAACQKLGISK

Sequences:

>Translated_348_residues
MNYRNIFITLAALSGTVTASAWSAESATVAFLMPDQASTRYEQHDFPGFKAEMSKLCADCKVIYQNANANASLQQQQFNS
VIAQGAKVIVLDPVDSSAAAALVENAQAQGVKVIAYDRPVPDKPADFYVSFDNEGIGYAIAKSLTDHLKASGVPQDAGVL
QINGSPTDAAAGLIRDGIHRGLKESGYKTLAEFDTPEWAPPKAQEWTAGQVTRFGDKIKGVVAANDGTGGGAIAAFKAAG
VQPLPPVTGNDATIAALQLIIAGDQYNTISKPSEIVAAAAAKVAVDFIQGKKPQASTTLYNTPSQLFTPEVVTAKNIKAE
IFDKKIQTWDQVCSGEYAAACQKLGISK
>Mature_348_residues
MNYRNIFITLAALSGTVTASAWSAESATVAFLMPDQASTRYEQHDFPGFKAEMSKLCADCKVIYQNANANASLQQQQFNS
VIAQGAKVIVLDPVDSSAAAALVENAQAQGVKVIAYDRPVPDKPADFYVSFDNEGIGYAIAKSLTDHLKASGVPQDAGVL
QINGSPTDAAAGLIRDGIHRGLKESGYKTLAEFDTPEWAPPKAQEWTAGQVTRFGDKIKGVVAANDGTGGGAIAAFKAAG
VQPLPPVTGNDATIAALQLIIAGDQYNTISKPSEIVAAAAAKVAVDFIQGKKPQASTTLYNTPSQLFTPEVVTAKNIKAE
IFDKKIQTWDQVCSGEYAAACQKLGISK

Specific function: Involved in the high-affinity D-xylose membrane transport system. Binds with high affinity to xylose [H]

COG id: COG4213

COG function: function code G; ABC-type xylose transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1789990, Length=310, Percent_Identity=36.1290322580645, Blast_Score=162, Evalue=3e-41,
Organism=Escherichia coli, GI1788473, Length=287, Percent_Identity=26.1324041811847, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761
- InterPro:   IPR013456 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 36645; Mature: 36645

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYRNIFITLAALSGTVTASAWSAESATVAFLMPDQASTRYEQHDFPGFKAEMSKLCADC
CCCCEEEEEEEEECCEEEECCCCCCCCEEEEEECCCCCCCCHHCCCCCHHHHHHHHHHHH
KVIYQNANANASLQQQQFNSVIAQGAKVIVLDPVDSSAAAALVENAQAQGVKVIAYDRPV
EEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCEEEEEECCCC
PDKPADFYVSFDNEGIGYAIAKSLTDHLKASGVPQDAGVLQINGSPTDAAAGLIRDGIHR
CCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHH
GLKESGYKTLAEFDTPEWAPPKAQEWTAGQVTRFGDKIKGVVAANDGTGGGAIAAFKAAG
HHHHHCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHEEEEEECCCCCCCCEEEHHHCC
VQPLPPVTGNDATIAALQLIIAGDQYNTISKPSEIVAAAAAKVAVDFIQGKKPQASTTLY
CCCCCCCCCCCHHEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEE
NTPSQLFTPEVVTAKNIKAEIFDKKIQTWDQVCSGEYAAACQKLGISK
CCCHHHCCCCEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC
>Mature Secondary Structure
MNYRNIFITLAALSGTVTASAWSAESATVAFLMPDQASTRYEQHDFPGFKAEMSKLCADC
CCCCEEEEEEEEECCEEEECCCCCCCCEEEEEECCCCCCCCHHCCCCCHHHHHHHHHHHH
KVIYQNANANASLQQQQFNSVIAQGAKVIVLDPVDSSAAAALVENAQAQGVKVIAYDRPV
EEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCEEEEEECCCC
PDKPADFYVSFDNEGIGYAIAKSLTDHLKASGVPQDAGVLQINGSPTDAAAGLIRDGIHR
CCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHH
GLKESGYKTLAEFDTPEWAPPKAQEWTAGQVTRFGDKIKGVVAANDGTGGGAIAAFKAAG
HHHHHCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHEEEEEECCCCCCCCEEEHHHCC
VQPLPPVTGNDATIAALQLIIAGDQYNTISKPSEIVAAAAAKVAVDFIQGKKPQASTTLY
CCCCCCCCCCCHHEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEE
NTPSQLFTPEVVTAKNIKAEIFDKKIQTWDQVCSGEYAAACQKLGISK
CCCHHHCCCCEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; xylose [Periplasm]; H2O [C]

Specific reaction: ATP + xylose [Periplasm] + H2O = ADP + phosphate + xylose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 8581399; 9298646 [H]