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The map label for this gene is mrkD [H]

Identifier: 238896387

GI number: 238896387

Start: 4368887

End: 4369882

Strand: Reverse

Name: mrkD [H]

Synonym: KP1_4557

Alternate gene names: 238896387

Gene position: 4369882-4368887 (Counterclockwise)

Preceding gene: 238896388

Following gene: 238896386

Centisome position: 83.26

GC content: 58.33

Gene sequence:

>996_bases
ATGTCGCTGAGGAAATTACTAACGCTTTTTATCGTCTTAATGGCGCTGGGAACCACCTCGTCCTGGGCCTCCTGTACGCG
TCTCTCATCGCCAACGGTGATGCTGGACATGGTGGTGGGCAGGGTGGTGGTGCCCCCGGATCTGCCGGTGGGCTCGGTGA
TCCTTACCCGCGACTGGACGATGAGCGCTCCCGGCGGGGCAAGCTATCGCTGTACTTCCGGCACCAACCGCTTTGCGGCG
AAGATCGTGTCGCCAGGGGCCACGGACCTTGGAAATAAAATCTACTCCACCAACGTGCCGGGAATCGGCATGCGTTTCAG
CCGCGGCGGCGCAACGGTAAATATCGTCTATCCCGACGTCTTTTCGTCCCGGGTATATAACACCACCAACTATTCCCTCG
AAGGGTCGCGCTTTACGCTGGAGATTATCAAAACCGCGGCAACCACCGGCAGCGGCACCCTGGCGGCGGGTAAGTACACC
TCCTACGACTGGGAGAGCGGCGGTAACCCGATCCTCGAAACCTATCTGAGCGCCAACGCCATCACCGTGGTCTCGCCCTC
CTGTTCGGTGCTGAGCGGGAAAAATATGAATGTCGATGTGGGTTCCATCCGGCGCACCGACCTGAAAGGGGTCGGCACCA
CCGCCGGCGGGAAGGATTTTAATATCGACCTGCAGTGCAGCGGCGGCCTGAGTGAAACGGGATATGCCAACATTAGCACC
TCGTTCTCCGGTACCCTGGCCACCAGCACTACCGCTACCATGGGCGCCTTGCTGAATGAAAAAGCCGGCAGCGGGATGGC
GAAAGGCATTGGCATCCAGGTGCTGAAGGATGGCTCCCCGCTGCAGTTTAATAAGAAATACACCGTCGGCCGCTTGAATA
ATCAGGAGACCCGCTACATCACCATACCGCTGCACGCGCGTTTTTATCAGTATGGCCCGACGACCAGCACCGGCGAGGTG
GAGTCGCATATGATCTTTAACCTGACGTACGATTAA

Upstream 100 bases:

>100_bases
TGATGTTTATCAGCGATGCGAACGCCAAACGCGCGATTGTGAAGTGGAGCGGCGGGCAGTGTTCGGTGGATCTGGGACAG
CAAACAACAAAGGATAGCGT

Downstream 100 bases:

>100_bases
TACGGGAGGGGGAATGAAGGGATTGCCGAAAAACACTATCGCGTGGCTGCTATTTTGCGGCAGCCTCGCCGCCCCCTCGG
CGTGGGGTTTTGAGACCAAT

Product: fimbrial adhesin protein precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 330

Protein sequence:

>331_residues
MSLRKLLTLFIVLMALGTTSSWASCTRLSSPTVMLDMVVGRVVVPPDLPVGSVILTRDWTMSAPGGASYRCTSGTNRFAA
KIVSPGATDLGNKIYSTNVPGIGMRFSRGGATVNIVYPDVFSSRVYNTTNYSLEGSRFTLEIIKTAATTGSGTLAAGKYT
SYDWESGGNPILETYLSANAITVVSPSCSVLSGKNMNVDVGSIRRTDLKGVGTTAGGKDFNIDLQCSGGLSETGYANIST
SFSGTLATSTTATMGALLNEKAGSGMAKGIGIQVLKDGSPLQFNKKYTVGRLNNQETRYITIPLHARFYQYGPTTSTGEV
ESHMIFNLTYD

Sequences:

>Translated_331_residues
MSLRKLLTLFIVLMALGTTSSWASCTRLSSPTVMLDMVVGRVVVPPDLPVGSVILTRDWTMSAPGGASYRCTSGTNRFAA
KIVSPGATDLGNKIYSTNVPGIGMRFSRGGATVNIVYPDVFSSRVYNTTNYSLEGSRFTLEIIKTAATTGSGTLAAGKYT
SYDWESGGNPILETYLSANAITVVSPSCSVLSGKNMNVDVGSIRRTDLKGVGTTAGGKDFNIDLQCSGGLSETGYANIST
SFSGTLATSTTATMGALLNEKAGSGMAKGIGIQVLKDGSPLQFNKKYTVGRLNNQETRYITIPLHARFYQYGPTTSTGEV
ESHMIFNLTYD
>Mature_330_residues
SLRKLLTLFIVLMALGTTSSWASCTRLSSPTVMLDMVVGRVVVPPDLPVGSVILTRDWTMSAPGGASYRCTSGTNRFAAK
IVSPGATDLGNKIYSTNVPGIGMRFSRGGATVNIVYPDVFSSRVYNTTNYSLEGSRFTLEIIKTAATTGSGTLAAGKYTS
YDWESGGNPILETYLSANAITVVSPSCSVLSGKNMNVDVGSIRRTDLKGVGTTAGGKDFNIDLQCSGGLSETGYANISTS
FSGTLATSTTATMGALLNEKAGSGMAKGIGIQVLKDGSPLQFNKKYTVGRLNNQETRYITIPLHARFYQYGPTTSTGEVE
SHMIFNLTYD

Specific function: Unknown

COG id: COG3539

COG function: function code NU; P pilus assembly protein, pilin FimA

Gene ontology:

Cell location: Fimbrium [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 35064; Mature: 34933

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLRKLLTLFIVLMALGTTSSWASCTRLSSPTVMLDMVVGRVVVPPDLPVGSVILTRDWT
CCHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCEEEEEHHCCEEECCCCCCCCEEEEECEE
MSAPGGASYRCTSGTNRFAAKIVSPGATDLGNKIYSTNVPGIGMRFSRGGATVNIVYPDV
ECCCCCCCEEECCCCCCEEEEEECCCCHHHCCEEEECCCCCCCEEEECCCCEEEEEECCC
FSSRVYNTTNYSLEGSRFTLEIIKTAATTGSGTLAAGKYTSYDWESGGNPILETYLSANA
CCCCEECCCCEEECCCEEEEEEEEECCCCCCCEEEECCCCCCCCCCCCCHHHHHHHCCCE
ITVVSPSCSVLSGKNMNVDVGSIRRTDLKGVGTTAGGKDFNIDLQCSGGLSETGYANIST
EEEECCCCCEECCCCCEEECCCCEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEC
SFSGTLATSTTATMGALLNEKAGSGMAKGIGIQVLKDGSPLQFNKKYTVGRLNNQETRYI
CCCCEEECCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEECCCEEEEECCCCCEEEE
TIPLHARFYQYGPTTSTGEVESHMIFNLTYD
EEEEEEEEEEECCCCCCCCCCEEEEEEEECC
>Mature Secondary Structure 
SLRKLLTLFIVLMALGTTSSWASCTRLSSPTVMLDMVVGRVVVPPDLPVGSVILTRDWT
CHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCEEEEEHHCCEEECCCCCCCCEEEEECEE
MSAPGGASYRCTSGTNRFAAKIVSPGATDLGNKIYSTNVPGIGMRFSRGGATVNIVYPDV
ECCCCCCCEEECCCCCCEEEEEECCCCHHHCCEEEECCCCCCCEEEECCCCEEEEEECCC
FSSRVYNTTNYSLEGSRFTLEIIKTAATTGSGTLAAGKYTSYDWESGGNPILETYLSANA
CCCCEECCCCEEECCCEEEEEEEEECCCCCCCEEEECCCCCCCCCCCCCHHHHHHHCCCE
ITVVSPSCSVLSGKNMNVDVGSIRRTDLKGVGTTAGGKDFNIDLQCSGGLSETGYANIST
EEEECCCCCEECCCCCEEECCCCEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEC
SFSGTLATSTTATMGALLNEKAGSGMAKGIGIQVLKDGSPLQFNKKYTVGRLNNQETRYI
CCCCEEECCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEECCCEEEEECCCCCEEEE
TIPLHARFYQYGPTTSTGEVESHMIFNLTYD
EEEEEEEEEEECCCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1670938; 2563996 [H]