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The map label for this gene is ycgR [H]

Identifier: 238896383

GI number: 238896383

Start: 4366043

End: 4366753

Strand: Direct

Name: ycgR [H]

Synonym: KP1_4551

Alternate gene names: 238896383

Gene position: 4366043-4366753 (Clockwise)

Preceding gene: 238896382

Following gene: 238896384

Centisome position: 83.19

GC content: 44.87

Gene sequence:

>711_bases
ATGCATATGACAGAGGGAACGATAAAGACCAGTAAGTATGAAATTATTGCTATTTTCAGAGAGGAGTTGCGCAAACGTAC
TGAAATTGAAATATTTTTTAACAACACCAGTATCATAACCCAACTGACGCGCGTGGACTTTGCCGAGTTTCATATTCAGA
CCCATCGCAAAATCCCGTCCGGGCATAAAATTCGCTTTCTCCTGCATAGCGATTCAGGGAAAATAGAGTTTAATGCGGCC
CTGACAAAACATGACAATAGCGGTGTCGATAAAGGTATCCGCTACGCTTTTTCATTGCCTGAATGCCTGCAGGTAGTGCA
GCGTCGCCGCGATCCCCGCTTTCGTTTACGCCATGAGCATGACTTTTATTGCCGCGGCCGCCATAAAAACGGCGAAAACT
ATCTTTTCGATATCAAAGACATTTCAGATGGCGGTTGCGCATTGATGACCAAAACGCCGAATCTTAAATTTCTCAGCCAC
AACGCCTTACTGAAAAACGCCGTACTTATGCTTGCAGAATATGGCGAGATCACCATCGACCTGGTGGTCAAAAATGTCAT
TGTTATCACCCTGGATAACGCTAATGAAGAGAGTGAGAGCTACTATCAGATATCCTGCCAGTTTAAGTTCCGCCATCTCG
ATGACCAGCGCAGAATAGAGAAGATACTGCTGGACCTGATCTTAGAAGCCAAGCGCAAAAAGAGAATCTGA

Upstream 100 bases:

>100_bases
AATAACATCAAACGCTCATAAAAACATCTGATTAACCCAATCAGAATGTTGCTATTGCTATAAGAAAAATCAAACGCCTC
ACGACAACTATTTACAAGGG

Downstream 100 bases:

>100_bases
CAACCTTGGACAGTATATTGCTGTACACCAATGACAATCTCATTGGTCACTCAATCTATCACTACCTTATTGATAGCCAT
GAAAATGCCACCCGTCTGAG

Product: hypothetical protein

Products: NA

Alternate protein names: Cyclic di-GMP binding protein YcgR [H]

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MHMTEGTIKTSKYEIIAIFREELRKRTEIEIFFNNTSIITQLTRVDFAEFHIQTHRKIPSGHKIRFLLHSDSGKIEFNAA
LTKHDNSGVDKGIRYAFSLPECLQVVQRRRDPRFRLRHEHDFYCRGRHKNGENYLFDIKDISDGGCALMTKTPNLKFLSH
NALLKNAVLMLAEYGEITIDLVVKNVIVITLDNANEESESYYQISCQFKFRHLDDQRRIEKILLDLILEAKRKKRI

Sequences:

>Translated_236_residues
MHMTEGTIKTSKYEIIAIFREELRKRTEIEIFFNNTSIITQLTRVDFAEFHIQTHRKIPSGHKIRFLLHSDSGKIEFNAA
LTKHDNSGVDKGIRYAFSLPECLQVVQRRRDPRFRLRHEHDFYCRGRHKNGENYLFDIKDISDGGCALMTKTPNLKFLSH
NALLKNAVLMLAEYGEITIDLVVKNVIVITLDNANEESESYYQISCQFKFRHLDDQRRIEKILLDLILEAKRKKRI
>Mature_236_residues
MHMTEGTIKTSKYEIIAIFREELRKRTEIEIFFNNTSIITQLTRVDFAEFHIQTHRKIPSGHKIRFLLHSDSGKIEFNAA
LTKHDNSGVDKGIRYAFSLPECLQVVQRRRDPRFRLRHEHDFYCRGRHKNGENYLFDIKDISDGGCALMTKTPNLKFLSH
NALLKNAVLMLAEYGEITIDLVVKNVIVITLDNANEESESYYQISCQFKFRHLDDQRRIEKILLDLILEAKRKKRI

Specific function: Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Increasing levels of c-di-GMP lead to decreased motility [H]

COG id: COG5581

COG function: function code M; Predicted glycosyltransferase

Gene ontology:

Cell location: Bacterial flagellum basal body [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PilZ domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009875
- InterPro:   IPR009926 [H]

Pfam domain/function: PF07238 PilZ; PF07317 YcgR [H]

EC number: NA

Molecular weight: Translated: 27738; Mature: 27738

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHMTEGTIKTSKYEIIAIFREELRKRTEIEIFFNNTSIITQLTRVDFAEFHIQTHRKIPS
CCCCCCCEECCCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCC
GHKIRFLLHSDSGKIEFNAALTKHDNSGVDKGIRYAFSLPECLQVVQRRRDPRFRLRHEH
CCEEEEEEECCCCCEEEEEEEEECCCCCCCHHHHEEECCHHHHHHHHHCCCCCEEECCCC
DFYCRGRHKNGENYLFDIKDISDGGCALMTKTPNLKFLSHNALLKNAVLMLAEYGEITID
CEEEECCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEECHHHHHHHHHHHHHCCCEEEE
LVVKNVIVITLDNANEESESYYQISCQFKFRHLDDQRRIEKILLDLILEAKRKKRI
EEEEEEEEEEECCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MHMTEGTIKTSKYEIIAIFREELRKRTEIEIFFNNTSIITQLTRVDFAEFHIQTHRKIPS
CCCCCCCEECCCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCC
GHKIRFLLHSDSGKIEFNAALTKHDNSGVDKGIRYAFSLPECLQVVQRRRDPRFRLRHEH
CCEEEEEEECCCCCEEEEEEEEECCCCCCCHHHHEEECCHHHHHHHHHCCCCCEEECCCC
DFYCRGRHKNGENYLFDIKDISDGGCALMTKTPNLKFLSHNALLKNAVLMLAEYGEITID
CEEEECCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEECHHHHHHHHHHHHHCCCEEEE
LVVKNVIVITLDNANEESESYYQISCQFKFRHLDDQRRIEKILLDLILEAKRKKRI
EEEEEEEEEEECCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA