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The map label for this gene is ppdB [H]

Identifier: 238896340

GI number: 238896340

Start: 4321571

End: 4322134

Strand: Reverse

Name: ppdB [H]

Synonym: KP1_4503

Alternate gene names: 238896340

Gene position: 4322134-4321571 (Counterclockwise)

Preceding gene: 238896341

Following gene: 238896339

Centisome position: 82.35

GC content: 68.97

Gene sequence:

>564_bases
GTGTCAGTGAGCCGCCGCGGATTTTCCCTGGCGGAGGCGCTTATCGCCATGGCCATCGGCTCGCTGCTGCTGATGGGGGC
CTGCCGCTTTCTGCCTGCCCTGCAGCGTCATATTCTGCGCCAGGGCGAACAGCTGGCCCTGGAGAACGAGCTGTGGCAGC
GTGTGCATGCCGTGGGAAAACATCTGCAGCGCGCCGGGTACTGCCGGGGAGCGTGCGGCGGAGCCGGGCTGGAGCTAGCC
GCTGGCGGGGAGTGTCTGATTGTGCGCTGGGATGCGAACAGCAACGGGAGATGGGAAACCTCCCCCGCGGCAGCGGCGGA
GAGCACCGGCTTTCGCCTGCGCGACGGCGCGCTGGAGACCCTGCGCGGGGCCAGCGACTGCCGCGGCGGCGGATGGGAGA
AAATCACCAACCCGGCCGCCATCGTGGTGACGCGCTTCTCGGTACAACGTCAGGTCACCCCGGGCTTCGCGCCGGAGCTG
AGCGTGACGCTGGCGGCGCGCTCCGCGCAACAGACGGGCCTGACGAGCGAGGTTGAGCAGCGGGTGACGGGGTATAACCT
GTGA

Upstream 100 bases:

>100_bases
GGGCGGGGAATCTGCGGCTGCAGAGCGCGGCCGGCAGCTGGAGCATTGTGATCTCACACTGGGGGCGGATTCGTTTATGC
CGCAGCGACAGCGCAGGAGG

Downstream 100 bases:

>100_bases
TCCGCCAGCGTGGAATGTCGTCGCTGCTGATGGTGCTCCTGTTGCTGACCCTCGGCTGCCTGTTACTCGAGGGGCTTAAC
CTGCAGCAGCGGGCGCTGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MSVSRRGFSLAEALIAMAIGSLLLMGACRFLPALQRHILRQGEQLALENELWQRVHAVGKHLQRAGYCRGACGGAGLELA
AGGECLIVRWDANSNGRWETSPAAAAESTGFRLRDGALETLRGASDCRGGGWEKITNPAAIVVTRFSVQRQVTPGFAPEL
SVTLAARSAQQTGLTSEVEQRVTGYNL

Sequences:

>Translated_187_residues
MSVSRRGFSLAEALIAMAIGSLLLMGACRFLPALQRHILRQGEQLALENELWQRVHAVGKHLQRAGYCRGACGGAGLELA
AGGECLIVRWDANSNGRWETSPAAAAESTGFRLRDGALETLRGASDCRGGGWEKITNPAAIVVTRFSVQRQVTPGFAPEL
SVTLAARSAQQTGLTSEVEQRVTGYNL
>Mature_186_residues
SVSRRGFSLAEALIAMAIGSLLLMGACRFLPALQRHILRQGEQLALENELWQRVHAVGKHLQRAGYCRGACGGAGLELAA
GGECLIVRWDANSNGRWETSPAAAAESTGFRLRDGALETLRGASDCRGGGWEKITNPAAIVVTRFSVQRQVTPGFAPELS
VTLAARSAQQTGLTSEVEQRVTGYNL

Specific function: Not yet known [H]

COG id: COG4795

COG function: function code U; Type II secretory pathway, component PulJ

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789189, Length=187, Percent_Identity=54.0106951871658, Blast_Score=217, Evalue=3e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012902
- InterPro:   IPR016419
- InterPro:   IPR001120 [H]

Pfam domain/function: PF07963 N_methyl [H]

EC number: NA

Molecular weight: Translated: 19993; Mature: 19862

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVSRRGFSLAEALIAMAIGSLLLMGACRFLPALQRHILRQGEQLALENELWQRVHAVGK
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
HLQRAGYCRGACGGAGLELAAGGECLIVRWDANSNGRWETSPAAAAESTGFRLRDGALET
HHHHHCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCHHHCCCCEECCHHHHH
LRGASDCRGGGWEKITNPAAIVVTRFSVQRQVTPGFAPELSVTLAARSAQQTGLTSEVEQ
HCCCCCCCCCCCHHHCCCCEEEEEHHHHHHCCCCCCCCCCEEHHHHHHHHHCCCHHHHHH
RVTGYNL
HHHCCCC
>Mature Secondary Structure 
SVSRRGFSLAEALIAMAIGSLLLMGACRFLPALQRHILRQGEQLALENELWQRVHAVGK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
HLQRAGYCRGACGGAGLELAAGGECLIVRWDANSNGRWETSPAAAAESTGFRLRDGALET
HHHHHCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCHHHCCCCEECCHHHHH
LRGASDCRGGGWEKITNPAAIVVTRFSVQRQVTPGFAPELSVTLAARSAQQTGLTSEVEQ
HCCCCCCCCCCCHHHCCCCEEEEEHHHHHHCCCCCCCCCCEEHHHHHHHHHCCCHHHHHH
RVTGYNL
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3520484; 9278503; 7934814 [H]