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The map label for this gene is pocR [H]

Identifier: 238896305

GI number: 238896305

Start: 4285354

End: 4286265

Strand: Reverse

Name: pocR [H]

Synonym: KP1_4467

Alternate gene names: 238896305

Gene position: 4286265-4285354 (Counterclockwise)

Preceding gene: 238896306

Following gene: 238896304

Centisome position: 81.67

GC content: 53.62

Gene sequence:

>912_bases
ATGATTTCTGCGAGTACCCTAAACTCAGAACTCATCAATAAAATCGCACAGGATTTTGCGCAAGCCACCAGTCTGGCGGT
TGTGGTCGTCAATATTCACGGTGATGAGATTTCTGAATTGTTTAATTTCACGCCGTTTTGCCAGCTGATGCGTCAGCACC
CGGAGCACAGCGGACGCTGTCGCATGAGCGACCGCTGCGGCGGGCTGGAAGCCTCGAAAAAAGACCAGCTGTGTATCTAC
CGCTGTCATGCGGGGTTAACCGATTTTTCCATCCCGCTGGTGATCGCCGGCCACCTGGTCGGCTTCGTGCTGTGCGGGCA
GGTGCGTCTGAGCAATGATGTTGAACTGGTTGATATCTTGAACGTCGATGACCGCTGGCAGGACGATCCGGCGCTGGTCC
AGGCGTTTCGCGATGTGCCGGAGATGGACTATTCGCGGGTTATCGCTTCGGCGGATCTGCTGAAGCTGATCGTCGAGAAT
TGCCTGAAAAAACAGCTCAACTTTGTGGTTATCAAAGATAACCCGTCGCAGAACGATCCGGCGCAGGCCAGCCGGGCGCC
CTCGCCGCACGATGGCAAAATGAAGAAGGCGCTGCGCTATATCGACGCGCATCTCTCCGATGAGCTGCGTCTGGAGGATG
TGGCGGCGCATGTCTATCTCAGCCCGTACTACTTCAGCAAACTGTTTAAAAAGTATCAGGGGATCGGTTTTAACGCCTGG
GTCAATCAGCAGCGGATGGCGAGCGCAAAAGAGCTGCTATGCCACAGCGACTGGAGCATCGCCAGCATCGCGCGGAATTT
AGGTTTTTCGCAAACCAGCTATTTTTGCAAAGTGTTTCGCCAGACCTATCAGGTAACGCCACAGGCATTTCGTCAGCAAA
TTAATGCCGGATCACAAACTGAGTCTTTTTAA

Upstream 100 bases:

>100_bases
TCAATGCACTTTTTTATCGTCGATGGGATCTGATGCTAAAAAAGGTAAATATGAAAAATATGTTTTATTTATAACAAAAA
ATTAACTGAGGGGTTTTATC

Downstream 100 bases:

>100_bases
ATGACAATATTTTGCTATTGCCGATTTTTGATATCCCCGAGTATCCTCATCAATATAAAATGAAAAAAACGACAGTAGAG
CAATAAATTGTCATAGCGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MISASTLNSELINKIAQDFAQATSLAVVVVNIHGDEISELFNFTPFCQLMRQHPEHSGRCRMSDRCGGLEASKKDQLCIY
RCHAGLTDFSIPLVIAGHLVGFVLCGQVRLSNDVELVDILNVDDRWQDDPALVQAFRDVPEMDYSRVIASADLLKLIVEN
CLKKQLNFVVIKDNPSQNDPAQASRAPSPHDGKMKKALRYIDAHLSDELRLEDVAAHVYLSPYYFSKLFKKYQGIGFNAW
VNQQRMASAKELLCHSDWSIASIARNLGFSQTSYFCKVFRQTYQVTPQAFRQQINAGSQTESF

Sequences:

>Translated_303_residues
MISASTLNSELINKIAQDFAQATSLAVVVVNIHGDEISELFNFTPFCQLMRQHPEHSGRCRMSDRCGGLEASKKDQLCIY
RCHAGLTDFSIPLVIAGHLVGFVLCGQVRLSNDVELVDILNVDDRWQDDPALVQAFRDVPEMDYSRVIASADLLKLIVEN
CLKKQLNFVVIKDNPSQNDPAQASRAPSPHDGKMKKALRYIDAHLSDELRLEDVAAHVYLSPYYFSKLFKKYQGIGFNAW
VNQQRMASAKELLCHSDWSIASIARNLGFSQTSYFCKVFRQTYQVTPQAFRQQINAGSQTESF
>Mature_303_residues
MISASTLNSELINKIAQDFAQATSLAVVVVNIHGDEISELFNFTPFCQLMRQHPEHSGRCRMSDRCGGLEASKKDQLCIY
RCHAGLTDFSIPLVIAGHLVGFVLCGQVRLSNDVELVDILNVDDRWQDDPALVQAFRDVPEMDYSRVIASADLLKLIVEN
CLKKQLNFVVIKDNPSQNDPAQASRAPSPHDGKMKKALRYIDAHLSDELRLEDVAAHVYLSPYYFSKLFKKYQGIGFNAW
VNQQRMASAKELLCHSDWSIASIARNLGFSQTSYFCKVFRQTYQVTPQAFRQQINAGSQTESF

Specific function: Positive regulatory protein of pdu and cob operons [H]

COG id: COG4936

COG function: function code TK; Predicted sensor domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790391, Length=102, Percent_Identity=38.2352941176471, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1786251, Length=104, Percent_Identity=38.4615384615385, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR018771 [H]

Pfam domain/function: PF10114 Hist_Kin_Sens; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34143; Mature: 34143

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISASTLNSELINKIAQDFAQATSLAVVVVNIHGDEISELFNFTPFCQLMRQHPEHSGRC
CCCHHHHHHHHHHHHHHHHHHHHCEEEEEEEECCHHHHHHHCCCHHHHHHHHCCCCCCCC
RMSDRCGGLEASKKDQLCIYRCHAGLTDFSIPLVIAGHLVGFVLCGQVRLSNDVELVDIL
CCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEECCCCEEEEEE
NVDDRWQDDPALVQAFRDVPEMDYSRVIASADLLKLIVENCLKKQLNFVVIKDNPSQNDP
CCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCC
AQASRAPSPHDGKMKKALRYIDAHLSDELRLEDVAAHVYLSPYYFSKLFKKYQGIGFNAW
CHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHEECHHHHHHHHHHHHCCCCHHH
VNQQRMASAKELLCHSDWSIASIARNLGFSQTSYFCKVFRQTYQVTPQAFRQQINAGSQT
HCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCC
ESF
CCC
>Mature Secondary Structure
MISASTLNSELINKIAQDFAQATSLAVVVVNIHGDEISELFNFTPFCQLMRQHPEHSGRC
CCCHHHHHHHHHHHHHHHHHHHHCEEEEEEEECCHHHHHHHCCCHHHHHHHHCCCCCCCC
RMSDRCGGLEASKKDQLCIYRCHAGLTDFSIPLVIAGHLVGFVLCGQVRLSNDVELVDIL
CCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEECCCCEEEEEE
NVDDRWQDDPALVQAFRDVPEMDYSRVIASADLLKLIVENCLKKQLNFVVIKDNPSQNDP
CCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCC
AQASRAPSPHDGKMKKALRYIDAHLSDELRLEDVAAHVYLSPYYFSKLFKKYQGIGFNAW
CHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHEECHHHHHHHHHHHHCCCCHHH
VNQQRMASAKELLCHSDWSIASIARNLGFSQTSYFCKVFRQTYQVTPQAFRQQINAGSQT
HCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCC
ESF
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8071226; 9352910; 11677609; 8501034 [H]