Click here to switch to the map view.

The map label for this gene is cbiD [H]

Identifier: 238896301

GI number: 238896301

Start: 4280687

End: 4281826

Strand: Reverse

Name: cbiD [H]

Synonym: KP1_4463

Alternate gene names: 238896301

Gene position: 4281826-4280687 (Counterclockwise)

Preceding gene: 238896302

Following gene: 238896300

Centisome position: 81.58

GC content: 62.37

Gene sequence:

>1140_bases
ATGAGCGATCAGACCTTTGACGCCCCGGTGTGGCATCACGGCAAAGCGCTGCGCAAGGGCTACACCACCGGCTCCTGCGC
CACAGCGGCGGCAAAAGTGGCGGCGCTGATGGTGATGCGCCAGCATCTGATTCATCAGGTCTCGATCGTCACCCCCTCCG
GCGTCACCCTGTGCCTGAACGTTGAGTCCCCGCACGTCGAAGGGCAGCAGGCGGTCGCCGCGATCCGTAAAGACGGCGGC
GATGATGTCGACGCCACCCACGGCATGCTGATTTTTGCCCGGGTCACCCTCAATGACAGCGGAGAGATTAGCCTGCAGGG
CGGGGAGGGTATCGGCACGGTGACCCGCAAAGGGATCGGCCTGCCGACAGGCAGCCCGGCGATAAACCGCACTCCGCGAC
ACACCATCGAGACCGCCGTGCGCGAAGCGATAGGTCCTACCCGCGGCGCGCAGGTGGAGATTTTTGCTCCGGAAGGCGTA
CTTCGCGCGCAAAAAACCTATAACGCCCGGCTGGGGATCCTCGGCGGCATCTCGATTATCGGCACCACGGGGATCGTTAC
CCCGATGTCGGAAGAGAGCTGGAAGCGCTCGCTCTCCCTCGAGCTGGAGATAAAACGCGCCGCCGGGCTGGAGCGCGTGG
TGCTGGTGCCGGGCAACCACGGTGAGCGCTTTGTCCGCGAGCAGATGGGCATCGACCCGCAGATGGTGGTCACCATGAGC
AACTTCGTCGGCTACATGATTGAAGAGGCGGTTCGGCTCGGTTTCCGCCAGATTGTGCTCATTGGCCATCCCGGCAAACT
GATCAAAATCGCCGCCGGGATCTTTCATACCCATAGCCATATCGCCGATGCGCGGATGGAAACTCTCGTCGCTCATCTGG
CGCTGCTTGGCGCGCCGCTGCCGCTGCTGACGCTGGTCAGCGAGTGCGACACTACCGAAGCGGCAATGGAGCATATCGAC
GCCTGGGGATACCAGCGCCTCTATAACCATCTGGCTGAGCGAATCTGCCAGCGTGTTCTTGAGACGCTGCGCTTCACTCA
GCAACCGCCCACCTGCGACGCGGTTCTGTTTTCTTTTGATAACCAGGTATTGGGCAGCAGCCGTCCGCTGGAGGCGATTG
CCCGGGAGCTGACATGTTGA

Upstream 100 bases:

>100_bases
AGAGCGGCCTGCCGGCCATCGCCGCGCTCGGCCGCAAAGGGGGAAGCAACGTGGCGGCAGCGATTGTGAACGCTCTGCTT
TACCACCTGCGGGAGGCGCA

Downstream 100 bases:

>100_bases
CGGTCGTGGGAATGGGCCCGGCGGGGCTGCAGTGGCTGATCCCGGCCGCGCGCGAGGCAATCGCCGCCGCTGAGGCGTTG
GTGGGCGGCAGCCGCCATCT

Product: cobalt-precorrin-6A synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 378

Protein sequence:

>379_residues
MSDQTFDAPVWHHGKALRKGYTTGSCATAAAKVAALMVMRQHLIHQVSIVTPSGVTLCLNVESPHVEGQQAVAAIRKDGG
DDVDATHGMLIFARVTLNDSGEISLQGGEGIGTVTRKGIGLPTGSPAINRTPRHTIETAVREAIGPTRGAQVEIFAPEGV
LRAQKTYNARLGILGGISIIGTTGIVTPMSEESWKRSLSLELEIKRAAGLERVVLVPGNHGERFVREQMGIDPQMVVTMS
NFVGYMIEEAVRLGFRQIVLIGHPGKLIKIAAGIFHTHSHIADARMETLVAHLALLGAPLPLLTLVSECDTTEAAMEHID
AWGYQRLYNHLAERICQRVLETLRFTQQPPTCDAVLFSFDNQVLGSSRPLEAIARELTC

Sequences:

>Translated_379_residues
MSDQTFDAPVWHHGKALRKGYTTGSCATAAAKVAALMVMRQHLIHQVSIVTPSGVTLCLNVESPHVEGQQAVAAIRKDGG
DDVDATHGMLIFARVTLNDSGEISLQGGEGIGTVTRKGIGLPTGSPAINRTPRHTIETAVREAIGPTRGAQVEIFAPEGV
LRAQKTYNARLGILGGISIIGTTGIVTPMSEESWKRSLSLELEIKRAAGLERVVLVPGNHGERFVREQMGIDPQMVVTMS
NFVGYMIEEAVRLGFRQIVLIGHPGKLIKIAAGIFHTHSHIADARMETLVAHLALLGAPLPLLTLVSECDTTEAAMEHID
AWGYQRLYNHLAERICQRVLETLRFTQQPPTCDAVLFSFDNQVLGSSRPLEAIARELTC
>Mature_378_residues
SDQTFDAPVWHHGKALRKGYTTGSCATAAAKVAALMVMRQHLIHQVSIVTPSGVTLCLNVESPHVEGQQAVAAIRKDGGD
DVDATHGMLIFARVTLNDSGEISLQGGEGIGTVTRKGIGLPTGSPAINRTPRHTIETAVREAIGPTRGAQVEIFAPEGVL
RAQKTYNARLGILGGISIIGTTGIVTPMSEESWKRSLSLELEIKRAAGLERVVLVPGNHGERFVREQMGIDPQMVVTMSN
FVGYMIEEAVRLGFRQIVLIGHPGKLIKIAAGIFHTHSHIADARMETLVAHLALLGAPLPLLTLVSECDTTEAAMEHIDA
WGYQRLYNHLAERICQRVLETLRFTQQPPTCDAVLFSFDNQVLGSSRPLEAIARELTC

Specific function: May catalyze the methylation of C-1 in cobalt-precorrin- 5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A [H]

COG id: COG1903

COG function: function code H; Cobalamin biosynthesis protein CbiD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002748 [H]

Pfam domain/function: PF01888 CbiD [H]

EC number: NA

Molecular weight: Translated: 40995; Mature: 40864

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDQTFDAPVWHHGKALRKGYTTGSCATAAAKVAALMVMRQHLIHQVSIVTPSGVTLCLN
CCCCCCCCCCHHCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEEE
VESPHVEGQQAVAAIRKDGGDDVDATHGMLIFARVTLNDSGEISLQGGEGIGTVTRKGIG
CCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHCCCC
LPTGSPAINRTPRHTIETAVREAIGPTRGAQVEIFAPEGVLRAQKTYNARLGILGGISII
CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHCCEEEEEECHHEE
GTTGIVTPMSEESWKRSLSLELEIKRAAGLERVVLVPGNHGERFVREQMGIDPQMVVTMS
ECCCCCCCCCHHHHHHCCEEEEEEHHHCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEHH
NFVGYMIEEAVRLGFRQIVLIGHPGKLIKIAAGIFHTHSHIADARMETLVAHLALLGAPL
HHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
PLLTLVSECDTTEAAMEHIDAWGYQRLYNHLAERICQRVLETLRFTQQPPTCDAVLFSFD
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEECC
NQVLGSSRPLEAIARELTC
CHHCCCCCCHHHHHHHHCC
>Mature Secondary Structure 
SDQTFDAPVWHHGKALRKGYTTGSCATAAAKVAALMVMRQHLIHQVSIVTPSGVTLCLN
CCCCCCCCCHHCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEEE
VESPHVEGQQAVAAIRKDGGDDVDATHGMLIFARVTLNDSGEISLQGGEGIGTVTRKGIG
CCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHCCCC
LPTGSPAINRTPRHTIETAVREAIGPTRGAQVEIFAPEGVLRAQKTYNARLGILGGISII
CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHCCEEEEEECHHEE
GTTGIVTPMSEESWKRSLSLELEIKRAAGLERVVLVPGNHGERFVREQMGIDPQMVVTMS
ECCCCCCCCCHHHHHHCCEEEEEEHHHCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEHH
NFVGYMIEEAVRLGFRQIVLIGHPGKLIKIAAGIFHTHSHIADARMETLVAHLALLGAPL
HHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
PLLTLVSECDTTEAAMEHIDAWGYQRLYNHLAERICQRVLETLRFTQQPPTCDAVLFSFD
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEECC
NQVLGSSRPLEAIARELTC
CHHCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA