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The map label for this gene is ygcF [H]

Identifier: 238896239

GI number: 238896239

Start: 4212168

End: 4212839

Strand: Reverse

Name: ygcF [H]

Synonym: KP1_4391

Alternate gene names: 238896239

Gene position: 4212839-4212168 (Counterclockwise)

Preceding gene: 238896242

Following gene: 238896237

Centisome position: 80.27

GC content: 58.04

Gene sequence:

>672_bases
ATGCAGTACCCGATTAACGAGATGTTCCAGACCCTGCAAGGCGAGGGTTACTTCACCGGCGTGCCTGCCATCTTTATTCG
TCTGCAGGGATGCCCGGTAGGATGCGCGTGGTGTGACACCAAGCATACCTGGGACAAGCTGGCCGATCGGGAAGTGTCGT
TGTTCAGCATCCTGGCGAAAACCAAAGAGAGCGACAAGTGGGGCCCGGCAAGCAGCGAGGATCTGCTGGCGATTATTGGG
CGGCAGGGGTGGACAGCCCGCCACGTGGTCATTACCGGCGGTGAGCCCTGCATTCATGATTTAACGCCGTTAACCTCGCT
TCTGGAACAAAACGGCTTTAGCTGTCAGATTGAAACCAGCGGCACCCATGAAGTACGCTGCAGCCCCAATACCTGGGTGA
CGGTTTCCCCGAAGGTCAACATGCGCGGTGGCTATGACGTGCTGTCTCAGGCCCTGCAGCGGGCGGATGAGATCAAGCAT
CCGGTAGGGCGCGTCCGCGACATAGAAGCGCTGGACGAACTGCTGGAAACGCTGAGCGATGACAAACCGCGGATCATCGC
CCTGCAGCCGATCAGTCAGAAAGAAGATGCGACGCGCCTGTGTATCGACACCTGCATCGCCCGCAACTGGCGCCTGTCTA
TGCAGACGCACAAGTATCTGAATATTGCCTGA

Upstream 100 bases:

>100_bases
GATATTGACGGAGGGGTAAAAAAGCGATCGCAGCGCAGGACAAGACCTGGGCAGCGAAATCTGCGATAATGAACGTTTAT
CACCCTAAACAGAGATGACT

Downstream 100 bases:

>100_bases
TAAAAAAGCCCGGCAGCGTACTGACCGGGCTTTTTTTCGCTTACTCGCCGCGATAGACGCAGCCGGCGGTGCAGGTCTCT
TTGACCATCACGGCGCTCAG

Product: putative coenzyme PQQ synthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLADREVSLFSILAKTKESDKWGPASSEDLLAIIG
RQGWTARHVVITGGEPCIHDLTPLTSLLEQNGFSCQIETSGTHEVRCSPNTWVTVSPKVNMRGGYDVLSQALQRADEIKH
PVGRVRDIEALDELLETLSDDKPRIIALQPISQKEDATRLCIDTCIARNWRLSMQTHKYLNIA

Sequences:

>Translated_223_residues
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLADREVSLFSILAKTKESDKWGPASSEDLLAIIG
RQGWTARHVVITGGEPCIHDLTPLTSLLEQNGFSCQIETSGTHEVRCSPNTWVTVSPKVNMRGGYDVLSQALQRADEIKH
PVGRVRDIEALDELLETLSDDKPRIIALQPISQKEDATRLCIDTCIARNWRLSMQTHKYLNIA
>Mature_223_residues
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLADREVSLFSILAKTKESDKWGPASSEDLLAIIG
RQGWTARHVVITGGEPCIHDLTPLTSLLEQNGFSCQIETSGTHEVRCSPNTWVTVSPKVNMRGGYDVLSQALQRADEIKH
PVGRVRDIEALDELLETLSDDKPRIIALQPISQKEDATRLCIDTCIARNWRLSMQTHKYLNIA

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=223, Percent_Identity=91.9282511210762, Blast_Score=438, Evalue=1e-124,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 24997; Mature: 24997

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLADREVSLFSILAK
CCCCHHHHHHHHCCCCEEECCCEEEEEECCCCCEEEECCCCHHHHHHHCCHHHHHHHHHH
TKESDKWGPASSEDLLAIIGRQGWTARHVVITGGEPCIHDLTPLTSLLEQNGFSCQIETS
HCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECC
GTHEVRCSPNTWVTVSPKVNMRGGYDVLSQALQRADEIKHPVGRVRDIEALDELLETLSD
CCEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCC
DKPRIIALQPISQKEDATRLCIDTCIARNWRLSMQTHKYLNIA
CCCEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCEEEECC
>Mature Secondary Structure
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLADREVSLFSILAK
CCCCHHHHHHHHCCCCEEECCCEEEEEECCCCCEEEECCCCHHHHHHHCCHHHHHHHHHH
TKESDKWGPASSEDLLAIIGRQGWTARHVVITGGEPCIHDLTPLTSLLEQNGFSCQIETS
HCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECC
GTHEVRCSPNTWVTVSPKVNMRGGYDVLSQALQRADEIKHPVGRVRDIEALDELLETLSD
CCEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCC
DKPRIIALQPISQKEDATRLCIDTCIARNWRLSMQTHKYLNIA
CCCEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]