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The map label for this gene is fimD [H]

Identifier: 238896107

GI number: 238896107

Start: 4077015

End: 4079552

Strand: Direct

Name: fimD [H]

Synonym: KP1_4246

Alternate gene names: 238896107

Gene position: 4077015-4079552 (Clockwise)

Preceding gene: 238896106

Following gene: 238896108

Centisome position: 77.68

GC content: 55.52

Gene sequence:

>2538_bases
ATGGACGATAGTAAATTACGCTATTTTGCCAGCGCATGGTTAATCTCCATCACGTTACCGGCAGACAGCGCGGAACGCTA
TAATGCCCAGTTTGTGAACGGCATCGACCCGCTGGCTTTTAATCAGTTTGTCGCCAGCGATGGCGACGTCATGCCGGGCA
CCTATGACGTTAATATTTACATTAACGATCTGCTGGTGGATAGCCGCCCCGTTCGCTTCTCAGAGGATAGCGCACATGGC
GGGTTGGCCCCCTGCCTGAGCGCGGCGGAATATATCCGCTATGGCGTCAAGATTGACGATGACCACCAGCCCTGTTTCGC
GCTGTCGCAGACGATCCGCCAGGCAGAGCAACAGCTGGATATCGCTAATCATCAGCTGATCATTCATATCCCTCAGCAAT
ATATCGAGCACTATCCCCGTGACTATGTTTCCCCCATGCGCTTTGATGAAGGTATTAACGCTGCTTTCGTCAACTACAGC
TATTCTACCGATGCCAATAATGGCGACGGGGGCAGCCACCAGTATCAATATCTTTCGCTAAACAGCGGGATCAATATTGC
ATCGTGGCGATTGCGCAATAATGCCTACTGGAATAAGTTCAGCGGGCAGGCGGATAAGTGGCAAAGCATCGCCAGTTGGG
CGGAAACGAACATCATTCCCTGGCGCAGCCGGCTTGTCGTCGGCCAGACCAGTACCGACAACAGCGTCTTCGATAGCGTC
CAGTTTCGCGGCGTACAGCTTGGCACCGATGTCGAAATGCGCCCCAGCAGCCAGACCGGCTTCGCGCCGGTCATTCGCGG
TGTGGCCAACAGCAACGCCCGGGTGGAAGTTCGGCAGAACAACTATCTGATTTACAGCGAGAACGTCCCAGCCGGGCCCT
TTGAGCTAAATGATATCAGCGCCGTTAACCGCAGCGGTGATTTCTACGTGACCGTCATTGAAGCCGACGGTAGCCAGACG
ACCTTTACTGTCGCCTACACCACCCTGCCACAGCTGGTGCGGGCAGGCCAATGGAATTATCAGCTGTCGGCGGGTAAGTA
TCATGACGGCGCTGACGGCTATGCCCCCGCCCTGATGCAAAGCTCGCTCTCTTATGGCCTGAATAATACCTTCACACTGT
ACGGTGGCGCCCTTGCAGCGGAGAACTATCGCGCCGGCGCCTTTGGCGTCGGTAGCAATCTGGGGGAGATTGGCGCCCTC
TCAGCCGACTATACGCTGGCGGGAACGACGCTGGCGAATGGCCAGCGCAAGCAGGGAGGGAGCGTGCGTTTTCTGTATGC
TAAATCCTTTTTATCAAGCAAGACCGACTTTCAAATCGCGGGCTACCGTTACTCAACGGCAGGTTATTATAGCCTCAGCG
ATGCGGTTAACGAGCGTCGACGCTGGCACAATGGCCTGTACGAAAATGATTACTGGCCCTCTGACGAAGACGAAAGCTGG
CAGGCAAGCGCTCCCCAACACTATTACACGTCCTGGTTTTATAATAAAAAGCATCGCTTTGATATTTCTGCCCGGCAAAC
TCTCGGTAAGAACAGCGCTTTCTTCCTTAACTTCAGCCAGCAAAATTACTGGAATAGCTCAGGAAGCGATATCTCTCTGC
AGGCGGGCTTTAACAGCACTATCCATAACGTGAACTATGGTCTGTACTATCAGAATACGCGTAGCCACTTCACCCATGAC
GACAATAGCATCACACTGCGCGTTTCCATCCCTTTTACTCTGCAAGAAAACCGCCGGATCAATACCGCATTTACCCTCGC
CCACAGTAAATCGTCTGGCACGTCCGGGCAGGCTGGGGTAAACGGCACGCTGCTCGATGATGATCGCCTGAGCTGGGCCG
TCACCAGCGCCTATGATGACACCAGCCATAGCACCAACAGCGCCAGCCTGGGTTATCTCGGCCAGTACGGTAACCTGTAT
ACCGGCTACGCCTACAGCAAAAGCCATCGTCAGGCGAGTCTGAATCTGAGCGGCGGCGTGGTGGCACACCGCGGCGGCGT
TACCCTCTCGCAACCGCTGGGCTCAACCTTTGCGCTGGTGGAAGCCAAAGACGCTCAGGGGGTAGGGATAGAGAATCAGA
CCGGCGTGCGCATCGATCCCTTCGGCTACGCTGTCGTACCACAAAGCGTTCCCTATCGGGTCAATTCTGTCGCGCTCAAC
CCTCAGGACTTCGATGCCTTTCTTGATGTCCCTAACGCAGTGGCGGATACCGTGCCTACCCGCGGGGCAATTACCCGGGT
GCGCTTTGATACGTTCCGGGGATATAGCGTGCTGATCCATACCACCCTCGCCGACGGCAGCTATCCACCATTGGGCGCCG
AGCTCTATCGCGCCAGTGGGATCAGCAATGGTCTGGTCGGCCCGGGAGGAGATGTCTATGTCAGCGGAGTCGATTCAGGC
GAAAAACTGCAGATAAAATGGGGCGAAACGCACCAGCAAAGCTGCGAAATCACCCTGCCCGAACTGCGCCAGAAGCCTCA
GCAGGCGACGGCCTGGCGTGAATTATCCTTAATCTGCACAGTAACCCCCTCGAGGTAA

Upstream 100 bases:

>100_bases
TGCAGCGCTTGCATAAAATGAAATATATTAATGATTACGGCGCCGTTGTTGATATTCCAATAAAAAAATAAACGTCGCAC
CTCTTTAGGGAGATAGAGTG

Downstream 100 bases:

>100_bases
TTATGCGCCGACTTAGCGATACGTTATTTCTGACATGGCTTTCCGTTCTGTTCATGCTGAGCGCCTTCCCGGCGCAGGCG
CTGACCTGCAAGACCACCTC

Product: outer membrane protein for export and assembly of type 1 fimbriae

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 845; Mature: 845

Protein sequence:

>845_residues
MDDSKLRYFASAWLISITLPADSAERYNAQFVNGIDPLAFNQFVASDGDVMPGTYDVNIYINDLLVDSRPVRFSEDSAHG
GLAPCLSAAEYIRYGVKIDDDHQPCFALSQTIRQAEQQLDIANHQLIIHIPQQYIEHYPRDYVSPMRFDEGINAAFVNYS
YSTDANNGDGGSHQYQYLSLNSGINIASWRLRNNAYWNKFSGQADKWQSIASWAETNIIPWRSRLVVGQTSTDNSVFDSV
QFRGVQLGTDVEMRPSSQTGFAPVIRGVANSNARVEVRQNNYLIYSENVPAGPFELNDISAVNRSGDFYVTVIEADGSQT
TFTVAYTTLPQLVRAGQWNYQLSAGKYHDGADGYAPALMQSSLSYGLNNTFTLYGGALAAENYRAGAFGVGSNLGEIGAL
SADYTLAGTTLANGQRKQGGSVRFLYAKSFLSSKTDFQIAGYRYSTAGYYSLSDAVNERRRWHNGLYENDYWPSDEDESW
QASAPQHYYTSWFYNKKHRFDISARQTLGKNSAFFLNFSQQNYWNSSGSDISLQAGFNSTIHNVNYGLYYQNTRSHFTHD
DNSITLRVSIPFTLQENRRINTAFTLAHSKSSGTSGQAGVNGTLLDDDRLSWAVTSAYDDTSHSTNSASLGYLGQYGNLY
TGYAYSKSHRQASLNLSGGVVAHRGGVTLSQPLGSTFALVEAKDAQGVGIENQTGVRIDPFGYAVVPQSVPYRVNSVALN
PQDFDAFLDVPNAVADTVPTRGAITRVRFDTFRGYSVLIHTTLADGSYPPLGAELYRASGISNGLVGPGGDVYVSGVDSG
EKLQIKWGETHQQSCEITLPELRQKPQQATAWRELSLICTVTPSR

Sequences:

>Translated_845_residues
MDDSKLRYFASAWLISITLPADSAERYNAQFVNGIDPLAFNQFVASDGDVMPGTYDVNIYINDLLVDSRPVRFSEDSAHG
GLAPCLSAAEYIRYGVKIDDDHQPCFALSQTIRQAEQQLDIANHQLIIHIPQQYIEHYPRDYVSPMRFDEGINAAFVNYS
YSTDANNGDGGSHQYQYLSLNSGINIASWRLRNNAYWNKFSGQADKWQSIASWAETNIIPWRSRLVVGQTSTDNSVFDSV
QFRGVQLGTDVEMRPSSQTGFAPVIRGVANSNARVEVRQNNYLIYSENVPAGPFELNDISAVNRSGDFYVTVIEADGSQT
TFTVAYTTLPQLVRAGQWNYQLSAGKYHDGADGYAPALMQSSLSYGLNNTFTLYGGALAAENYRAGAFGVGSNLGEIGAL
SADYTLAGTTLANGQRKQGGSVRFLYAKSFLSSKTDFQIAGYRYSTAGYYSLSDAVNERRRWHNGLYENDYWPSDEDESW
QASAPQHYYTSWFYNKKHRFDISARQTLGKNSAFFLNFSQQNYWNSSGSDISLQAGFNSTIHNVNYGLYYQNTRSHFTHD
DNSITLRVSIPFTLQENRRINTAFTLAHSKSSGTSGQAGVNGTLLDDDRLSWAVTSAYDDTSHSTNSASLGYLGQYGNLY
TGYAYSKSHRQASLNLSGGVVAHRGGVTLSQPLGSTFALVEAKDAQGVGIENQTGVRIDPFGYAVVPQSVPYRVNSVALN
PQDFDAFLDVPNAVADTVPTRGAITRVRFDTFRGYSVLIHTTLADGSYPPLGAELYRASGISNGLVGPGGDVYVSGVDSG
EKLQIKWGETHQQSCEITLPELRQKPQQATAWRELSLICTVTPSR
>Mature_845_residues
MDDSKLRYFASAWLISITLPADSAERYNAQFVNGIDPLAFNQFVASDGDVMPGTYDVNIYINDLLVDSRPVRFSEDSAHG
GLAPCLSAAEYIRYGVKIDDDHQPCFALSQTIRQAEQQLDIANHQLIIHIPQQYIEHYPRDYVSPMRFDEGINAAFVNYS
YSTDANNGDGGSHQYQYLSLNSGINIASWRLRNNAYWNKFSGQADKWQSIASWAETNIIPWRSRLVVGQTSTDNSVFDSV
QFRGVQLGTDVEMRPSSQTGFAPVIRGVANSNARVEVRQNNYLIYSENVPAGPFELNDISAVNRSGDFYVTVIEADGSQT
TFTVAYTTLPQLVRAGQWNYQLSAGKYHDGADGYAPALMQSSLSYGLNNTFTLYGGALAAENYRAGAFGVGSNLGEIGAL
SADYTLAGTTLANGQRKQGGSVRFLYAKSFLSSKTDFQIAGYRYSTAGYYSLSDAVNERRRWHNGLYENDYWPSDEDESW
QASAPQHYYTSWFYNKKHRFDISARQTLGKNSAFFLNFSQQNYWNSSGSDISLQAGFNSTIHNVNYGLYYQNTRSHFTHD
DNSITLRVSIPFTLQENRRINTAFTLAHSKSSGTSGQAGVNGTLLDDDRLSWAVTSAYDDTSHSTNSASLGYLGQYGNLY
TGYAYSKSHRQASLNLSGGVVAHRGGVTLSQPLGSTFALVEAKDAQGVGIENQTGVRIDPFGYAVVPQSVPYRVNSVALN
PQDFDAFLDVPNAVADTVPTRGAITRVRFDTFRGYSVLIHTTLADGSYPPLGAELYRASGISNGLVGPGGDVYVSGVDSG
EKLQIKWGETHQQSCEITLPELRQKPQQATAWRELSLICTVTPSR

Specific function: Involved in the export and assembly of fimA fimbrial subunits across the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1790772, Length=828, Percent_Identity=39.7342995169082, Blast_Score=556, Evalue=1e-159,
Organism=Escherichia coli, GI1787172, Length=854, Percent_Identity=35.0117096018735, Blast_Score=478, Evalue=1e-135,
Organism=Escherichia coli, GI1786744, Length=815, Percent_Identity=35.7055214723926, Blast_Score=461, Evalue=1e-131,
Organism=Escherichia coli, GI1789533, Length=790, Percent_Identity=34.1772151898734, Blast_Score=434, Evalue=1e-122,
Organism=Escherichia coli, GI1786332, Length=859, Percent_Identity=28.4051222351572, Blast_Score=326, Evalue=4e-90,
Organism=Escherichia coli, GI1788427, Length=828, Percent_Identity=28.0193236714976, Blast_Score=318, Evalue=1e-87,
Organism=Escherichia coli, GI87081778, Length=814, Percent_Identity=26.9041769041769, Blast_Score=220, Evalue=3e-58,
Organism=Escherichia coli, GI1789610, Length=816, Percent_Identity=26.8382352941176, Blast_Score=160, Evalue=3e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 93178; Mature: 93178

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDSKLRYFASAWLISITLPADSAERYNAQFVNGIDPLAFNQFVASDGDVMPGTYDVNIY
CCCCCEEEEEEEEEEEEECCCCCCHHCCCHHHCCCCCHHHHHHHCCCCCCCCCEEEEEEE
INDLLVDSRPVRFSEDSAHGGLAPCLSAAEYIRYGVKIDDDHQPCFALSQTIRQAEQQLD
EEEEEECCCCCEECCCCCCCCHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHC
IANHQLIIHIPQQYIEHYPRDYVSPMRFDEGINAAFVNYSYSTDANNGDGGSHQYQYLSL
CCCCEEEEECCHHHHHHCCHHHCCCHHHCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEE
NSGINIASWRLRNNAYWNKFSGQADKWQSIASWAETNIIPWRSRLVVGQTSTDNSVFDSV
CCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHCC
QFRGVQLGTDVEMRPSSQTGFAPVIRGVANSNARVEVRQNNYLIYSENVPAGPFELNDIS
EEEEEEECCCCEECCCCCCCHHHHHHHHCCCCCEEEEECCCEEEEECCCCCCCEECCCCC
AVNRSGDFYVTVIEADGSQTTFTVAYTTLPQLVRAGQWNYQLSAGKYHDGADGYAPALMQ
EECCCCCEEEEEEECCCCCEEEEEEEHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHH
SSLSYGLNNTFTLYGGALAAENYRAGAFGVGSNLGEIGALSADYTLAGTTLANGQRKQGG
HHHHCCCCCEEEEECCEEEECCCCCCEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCC
SVRFLYAKSFLSSKTDFQIAGYRYSTAGYYSLSDAVNERRRWHNGLYENDYWPSDEDESW
CEEEEEEEHHHCCCCCEEEEEEEECCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
QASAPQHYYTSWFYNKKHRFDISARQTLGKNSAFFLNFSQQNYWNSSGSDISLQAGFNST
CCCCCCCEEEEEEECCCEEEECHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCC
IHNVNYGLYYQNTRSHFTHDDNSITLRVSIPFTLQENRRINTAFTLAHSKSSGTSGQAGV
EEECEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCC
NGTLLDDDRLSWAVTSAYDDTSHSTNSASLGYLGQYGNLYTGYAYSKSHRQASLNLSGGV
CCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEECEEECCCCCEEEEECCCCE
VAHRGGVTLSQPLGSTFALVEAKDAQGVGIENQTGVRIDPFGYAVVPQSVPYRVNSVALN
EEECCCEEECCCCCCEEEEEEECCCCCCCCCCCCCCEECCCCEEECCCCCCEEEEEEEEC
PQDFDAFLDVPNAVADTVPTRGAITRVRFDTFRGYSVLIHTTLADGSYPPLGAELYRASG
CCCCHHHHCCCHHHHHCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCHHHHHHCC
ISNGLVGPGGDVYVSGVDSGEKLQIKWGETHQQSCEITLPELRQKPQQATAWRELSLICT
CCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCEEECHHHHCCCHHHHHHEEEEEEEE
VTPSR
ECCCC
>Mature Secondary Structure
MDDSKLRYFASAWLISITLPADSAERYNAQFVNGIDPLAFNQFVASDGDVMPGTYDVNIY
CCCCCEEEEEEEEEEEEECCCCCCHHCCCHHHCCCCCHHHHHHHCCCCCCCCCEEEEEEE
INDLLVDSRPVRFSEDSAHGGLAPCLSAAEYIRYGVKIDDDHQPCFALSQTIRQAEQQLD
EEEEEECCCCCEECCCCCCCCHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHC
IANHQLIIHIPQQYIEHYPRDYVSPMRFDEGINAAFVNYSYSTDANNGDGGSHQYQYLSL
CCCCEEEEECCHHHHHHCCHHHCCCHHHCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEE
NSGINIASWRLRNNAYWNKFSGQADKWQSIASWAETNIIPWRSRLVVGQTSTDNSVFDSV
CCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHCC
QFRGVQLGTDVEMRPSSQTGFAPVIRGVANSNARVEVRQNNYLIYSENVPAGPFELNDIS
EEEEEEECCCCEECCCCCCCHHHHHHHHCCCCCEEEEECCCEEEEECCCCCCCEECCCCC
AVNRSGDFYVTVIEADGSQTTFTVAYTTLPQLVRAGQWNYQLSAGKYHDGADGYAPALMQ
EECCCCCEEEEEEECCCCCEEEEEEEHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHH
SSLSYGLNNTFTLYGGALAAENYRAGAFGVGSNLGEIGALSADYTLAGTTLANGQRKQGG
HHHHCCCCCEEEEECCEEEECCCCCCEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCC
SVRFLYAKSFLSSKTDFQIAGYRYSTAGYYSLSDAVNERRRWHNGLYENDYWPSDEDESW
CEEEEEEEHHHCCCCCEEEEEEEECCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
QASAPQHYYTSWFYNKKHRFDISARQTLGKNSAFFLNFSQQNYWNSSGSDISLQAGFNST
CCCCCCCEEEEEEECCCEEEECHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCC
IHNVNYGLYYQNTRSHFTHDDNSITLRVSIPFTLQENRRINTAFTLAHSKSSGTSGQAGV
EEECEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCC
NGTLLDDDRLSWAVTSAYDDTSHSTNSASLGYLGQYGNLYTGYAYSKSHRQASLNLSGGV
CCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEECEEECCCCCEEEEECCCCE
VAHRGGVTLSQPLGSTFALVEAKDAQGVGIENQTGVRIDPFGYAVVPQSVPYRVNSVALN
EEECCCEEECCCCCCEEEEEEECCCCCCCCCCCCCCEECCCCEEECCCCCCEEEEEEEEC
PQDFDAFLDVPNAVADTVPTRGAITRVRFDTFRGYSVLIHTTLADGSYPPLGAELYRASG
CCCCHHHHCCCHHHHHCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCHHHHHHCC
ISNGLVGPGGDVYVSGVDSGEKLQIKWGETHQQSCEITLPELRQKPQQATAWRELSLICT
CCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCEEECHHHHCCCHHHHHHEEEEEEEE
VTPSR
ECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1970114; 7610040; 9278503 [H]