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The map label for this gene is fim [H]

Identifier: 238896106

GI number: 238896106

Start: 4076317

End: 4076985

Strand: Direct

Name: fim [H]

Synonym: KP1_4245

Alternate gene names: 238896106

Gene position: 4076317-4076985 (Clockwise)

Preceding gene: 238896105

Following gene: 238896107

Centisome position: 77.67

GC content: 47.53

Gene sequence:

>669_bases
ATGAAAACGCTGCTGGCAGTGATCATAGGCGCTTTGGCTTTTCAGACCCAGGCGGCCATTACCATCGATGCCTCACGGGT
TATTTATTCGGGCAAAGATAAATCGGCCAGTCTGAAAATTAACAACCGAAGCAGCAAAAACTATATCGTCCAGACCTGGC
TTGATACGGGTCCGGAGACCCCCAGCAGCGGCTTACCCATTGTGGCAACGCCGCCCCTGGTCAAATTACGCCCCGAGCAA
TCGGCACAACTGCGCTTTATTTACTCAGGAACCGGTCTTCCTGCCGACAGGGAAAGTCTGTTTTGGGTGAATATTCAGGA
GGTCCCTCCTGCGCCTGAGGAAAATAATATCCTGCAGTTCGCGATTCGCACCCGATTAAAACTATTTTATCGCCCGCAAG
GGATTGCCACATCGCTGCCCAAAGCCGTTGAAAATCTGCAGTGGCAGCAAAGCGCTAACACGTTATCTTTTACTAACAAC
AGTCCACTGCATATTACGGTTATTAATGCCGAGGCGATCGACAACAAAGGCAAAATCTATCCTCTGAAAAACTTTATGTT
GCTGCCGTACAGTCATCACGCTGTCAATATCGCCAGCATGCAGCGCTTGCATAAAATGAAATATATTAATGATTACGGCG
CCGTTGTTGATATTCCAATAAAAAAATAA

Upstream 100 bases:

>100_bases
ACGAAGTCGACGCTGGCGCCGGCAATGCGACCGCCCGGTTTACCATTATGCAGGAATAACACCTGGCCAGGGACGGCACG
ACGCGGATAAGGGGTAAGAT

Downstream 100 bases:

>100_bases
ACGTCGCACCTCTTTAGGGAGATAGAGTGATGGACGATAGTAAATTACGCTATTTTGCCAGCGCATGGTTAATCTCCATC
ACGTTACCGGCAGACAGCGC

Product: putative pilin chaperone

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MKTLLAVIIGALAFQTQAAITIDASRVIYSGKDKSASLKINNRSSKNYIVQTWLDTGPETPSSGLPIVATPPLVKLRPEQ
SAQLRFIYSGTGLPADRESLFWVNIQEVPPAPEENNILQFAIRTRLKLFYRPQGIATSLPKAVENLQWQQSANTLSFTNN
SPLHITVINAEAIDNKGKIYPLKNFMLLPYSHHAVNIASMQRLHKMKYINDYGAVVDIPIKK

Sequences:

>Translated_222_residues
MKTLLAVIIGALAFQTQAAITIDASRVIYSGKDKSASLKINNRSSKNYIVQTWLDTGPETPSSGLPIVATPPLVKLRPEQ
SAQLRFIYSGTGLPADRESLFWVNIQEVPPAPEENNILQFAIRTRLKLFYRPQGIATSLPKAVENLQWQQSANTLSFTNN
SPLHITVINAEAIDNKGKIYPLKNFMLLPYSHHAVNIASMQRLHKMKYINDYGAVVDIPIKK
>Mature_222_residues
MKTLLAVIIGALAFQTQAAITIDASRVIYSGKDKSASLKINNRSSKNYIVQTWLDTGPETPSSGLPIVATPPLVKLRPEQ
SAQLRFIYSGTGLPADRESLFWVNIQEVPPAPEENNILQFAIRTRLKLFYRPQGIATSLPKAVENLQWQQSANTLSFTNN
SPLHITVINAEAIDNKGKIYPLKNFMLLPYSHHAVNIASMQRLHKMKYINDYGAVVDIPIKK

Specific function: Probably mediates assembly of a pilin [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1786333, Length=233, Percent_Identity=32.618025751073, Blast_Score=134, Evalue=5e-33,
Organism=Escherichia coli, GI1786936, Length=219, Percent_Identity=33.3333333333333, Blast_Score=121, Evalue=3e-29,
Organism=Escherichia coli, GI1786743, Length=227, Percent_Identity=32.15859030837, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1790771, Length=223, Percent_Identity=31.390134529148, Blast_Score=107, Evalue=7e-25,
Organism=Escherichia coli, GI1788428, Length=222, Percent_Identity=30.1801801801802, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI87082203, Length=218, Percent_Identity=29.8165137614679, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1787171, Length=203, Percent_Identity=33.0049261083744, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1788677, Length=204, Percent_Identity=28.921568627451, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1789532, Length=218, Percent_Identity=28.8990825688073, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI87081806, Length=223, Percent_Identity=27.3542600896861, Blast_Score=80, Evalue=8e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 24741; Mature: 24741

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTLLAVIIGALAFQTQAAITIDASRVIYSGKDKSASLKINNRSSKNYIVQTWLDTGPET
CHHHHHHHHHHHHHCCCEEEEEECCEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCCC
PSSGLPIVATPPLVKLRPEQSAQLRFIYSGTGLPADRESLFWVNIQEVPPAPEENNILQF
CCCCCCEEECCCEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCEEEE
AIRTRLKLFYRPQGIATSLPKAVENLQWQQSANTLSFTNNSPLHITVINAEAIDNKGKIY
EEHHHEEEEECCCCCHHHHHHHHHHCCHHHCCCEEEECCCCCEEEEEEEEEHCCCCCCEE
PLKNFMLLPYSHHAVNIASMQRLHKMKYINDYGAVVDIPIKK
EECCEEEEECCCCEEEHHHHHHHHHHHHCCCCCCEEEEEECC
>Mature Secondary Structure
MKTLLAVIIGALAFQTQAAITIDASRVIYSGKDKSASLKINNRSSKNYIVQTWLDTGPET
CHHHHHHHHHHHHHCCCEEEEEECCEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCCC
PSSGLPIVATPPLVKLRPEQSAQLRFIYSGTGLPADRESLFWVNIQEVPPAPEENNILQF
CCCCCCEEECCCEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCEEEE
AIRTRLKLFYRPQGIATSLPKAVENLQWQQSANTLSFTNNSPLHITVINAEAIDNKGKIY
EEHHHEEEEECCCCCHHHHHHHHHHCCHHHCCCEEEECCCCCEEEEEEEEEHCCCCCCEE
PLKNFMLLPYSHHAVNIASMQRLHKMKYINDYGAVVDIPIKK
EECCEEEEECCCCEEEHHHHHHHHHHHHCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8102362; 8202364; 9278503 [H]