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The map label for this gene is ypdB [H]

Identifier: 238895868

GI number: 238895868

Start: 3812711

End: 3813448

Strand: Direct

Name: ypdB [H]

Synonym: KP1_3988

Alternate gene names: 238895868

Gene position: 3812711-3813448 (Clockwise)

Preceding gene: 238895867

Following gene: 238895870

Centisome position: 72.64

GC content: 50.27

Gene sequence:

>738_bases
ATGAAAGTTATCATTGTGGAGGATGAGTTTCTGGCCCAGCAGGAGCTCTCCTGGCTTATTAACACCCATAGCCAGATGGA
GATCGTCGGCAGCTTTGACGACGGCCTGGACGTGCTGAAATTTCTCCAGCACAACAAGGTCGACGCCATCTTTCTCGATA
TCAATATTCCGTCGCTCGACGGGGTTCTGCTGGCGCAAAACATCAGCCAGTTTGCCCATAAACCTTTTATCGTCTTTATC
ACCGCGTGGAAAGAACATGCGGTGGAAGCCTTTGAGCTGGAAGCCTTTGACTACATCCTGAAACCCTACCAGGAGTCGCG
CATCATCAATATGCTGCAAAAGCTGACCACCGCCTGGCAGCAGCAAAATAACGCTGCTTCAGGATTAGCCAGCGCAGCGC
CACGGGAAAACGACACCATCAATCTGATCAAAGATGAGCGGATCATCGTCACCAGTATTCATGATATTTATTATGCCGAG
GCGCATGAAAAGATGACATTCGTCTATACCCGCCGGGAGTCATTCGTCATGCCGATGAACATTACTGAATTCTGCAGCAA
ACTGCCCACCGCGCATTTCTTCCGCTGCCACCGCTCGTATTGCGTAAATCTCAGCAAAATTCGGGAAATTGAGCCGTGGT
TCAACAACACCTATGTGCTGCGCCTGCGTGACCTGGAGTTTCAGGTTCCGGTCAGTCGCAGTAAAGTGAAAGAGTTTCGC
CAGCTGATGAATCTGTAG

Upstream 100 bases:

>100_bases
TCCGCAATCTGACGCCGGGAACCGAAATCGCCTTTTATGTCCCCAATAACTCTACGCCGCAGGCGCTGACGGAGTCGCTG
TTGTCATGAGCGGAGAAAAG

Downstream 100 bases:

>100_bases
AGAGCGGAAAGCACCGCCATCCGGGCTACGACGGTAGCCCGGGAGAAGAATGCTTAAAGCACCTGGCCCAGCGTCTGACG
CAGATGCGCGCCGGAGCCCA

Product: putative 2-component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFI
TAWKEHAVEAFELEAFDYILKPYQESRIINMLQKLTTAWQQQNNAASGLASAAPRENDTINLIKDERIIVTSIHDIYYAE
AHEKMTFVYTRRESFVMPMNITEFCSKLPTAHFFRCHRSYCVNLSKIREIEPWFNNTYVLRLRDLEFQVPVSRSKVKEFR
QLMNL

Sequences:

>Translated_245_residues
MKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFI
TAWKEHAVEAFELEAFDYILKPYQESRIINMLQKLTTAWQQQNNAASGLASAAPRENDTINLIKDERIIVTSIHDIYYAE
AHEKMTFVYTRRESFVMPMNITEFCSKLPTAHFFRCHRSYCVNLSKIREIEPWFNNTYVLRLRDLEFQVPVSRSKVKEFR
QLMNL
>Mature_245_residues
MKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFI
TAWKEHAVEAFELEAFDYILKPYQESRIINMLQKLTTAWQQQNNAASGLASAAPRENDTINLIKDERIIVTSIHDIYYAE
AHEKMTFVYTRRESFVMPMNITEFCSKLPTAHFFRCHRSYCVNLSKIREIEPWFNNTYVLRLRDLEFQVPVSRSKVKEFR
QLMNL

Specific function: Unknown

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=245, Percent_Identity=86.9387755102041, Blast_Score=449, Evalue=1e-128,
Organism=Escherichia coli, GI87082052, Length=252, Percent_Identity=31.3492063492063, Blast_Score=120, Evalue=6e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 28680; Mature: 28680

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLDINIPSLD
CEEEEECHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEEEECCCCC
GVLLAQNISQFAHKPFIVFITAWKEHAVEAFELEAFDYILKPYQESRIINMLQKLTTAWQ
CHHHHHHHHHHHCCCEEEEEEECHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
QQNNAASGLASAAPRENDTINLIKDERIIVTSIHDIYYAEAHEKMTFVYTRRESFVMPMN
HCCCHHHHHHHCCCCCCCEEEEEECCEEEEEEHHHHHHHHHCCCEEEEEEECCCEEECCC
ITEFCSKLPTAHFFRCHRSYCVNLSKIREIEPWFNNTYVLRLRDLEFQVPVSRSKVKEFR
HHHHHHHCCHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEEEECCEEECCCCHHHHHHHH
QLMNL
HHHCC
>Mature Secondary Structure
MKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLDINIPSLD
CEEEEECHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEEEECCCCC
GVLLAQNISQFAHKPFIVFITAWKEHAVEAFELEAFDYILKPYQESRIINMLQKLTTAWQ
CHHHHHHHHHHHCCCEEEEEEECHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
QQNNAASGLASAAPRENDTINLIKDERIIVTSIHDIYYAEAHEKMTFVYTRRESFVMPMN
HCCCHHHHHHHCCCCCCCEEEEEECCEEEEEEHHHHHHHHHCCCEEEEEEECCCEEECCC
ITEFCSKLPTAHFFRCHRSYCVNLSKIREIEPWFNNTYVLRLRDLEFQVPVSRSKVKEFR
HHHHHHHCCHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEEEECCEEECCCCHHHHHHHH
QLMNL
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]