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The map label for this gene is ypdA [H]

Identifier: 238895867

GI number: 238895867

Start: 3811020

End: 3812699

Strand: Direct

Name: ypdA [H]

Synonym: KP1_3987

Alternate gene names: 238895867

Gene position: 3811020-3812699 (Clockwise)

Preceding gene: 238895866

Following gene: 238895868

Centisome position: 72.61

GC content: 55.6

Gene sequence:

>1680_bases
ATGATGCTGGCGGTCTATGATCGTGCGGCCCTGATGCTTATTTGCCTCTTTTTCCTTATTCGCCTGCGCCTGTTCCGCGA
ACTGTTGCATAAGTCGGCCCATACTCCGAAAGAGCTGCTGGCGGTGACAGCCATTTTCTCGCTGTTCGCGCTATTTAGTA
CCTGGTCCGGCGTCCCGGTTGAGGGGTCCCTGGTGAACGTCCGCATTATCGCCGTGATGTCCGGTGGGATCCTGTTTGGT
CCCTGGGTGGGCGCGATTGTCGGGGCGATTGCCGGCGTGCACCGCTATTTGATTGATATCGACGGCGTGACCGCGGTGCC
CTGCTTTATCACCAGCATTGTCGCCGGCCTGCTGTCGGGGTTGATTAATCGTAAAGTGGCCCGCGAACAACGGTGGAAAA
TCGGCATTCTGGCGGGGATGATGTGTGAAACTCTGACCATGATCCTGGTGGTGGTCTGGGCGCCTTCCCTGAGTCTCGGC
GTAGATATTGTTTCGAAAATTGGTATCCCGATGATCCTCGGCAGCGTCTGCATCGGCTTTATCGTGCTGCTGGTGCAGAG
CGTTGAAGGGGAAAAGGAGGCCAGCGCGGCGCGGCAGGCGAAACTGGCGCTCGATATCGCCAACAAAACCCTGCCGCTGT
TTCGACACGTTAACAGCGATTCTCTGCGCCAGGTTTGCGAGATTATCCGCCGCGACATTACCGCCGACGCGGTGGCGATC
ACCAATACCGAGCACGTGCTGGCCTACGTGGGCGTCGGTGAAGCCAACTATCAACGCCACGACGATATGATTAGCCCCAC
CACCCGGCAGGCGATTCGTTATGGGAAAATCATCATAAAAAACAATGACGAAGCCCACCGTACCCCGGAGATCCACTCCT
TGATGGTGATCCCGCTGTGGGAAAAAGGGGTGGTGACCGGCACGCTAAAAATCTATTACTGCCACGCCCATCGCATCACT
TCGACGCTGCAGGAGATGGCGATTGGCCTGTCGCAAATAATCTCCACCCAGCTGGAAGTCTCCCGCGCCGAACAGCTGCG
GGAGATGGCCAACAAAGCGGAGCTGCGCGCCCTGCAAAGCAAAATTAACCCGCATTTTTTATTTAATGCGCTGAACGCGA
TCTCCTCCTCGATTCGCCTTAATCCGGACACCGCGCGCCAGCTCATTTTTAATCTGTCGCGCTACCTGCGCTATAACATC
GAATTAAAAGACGATGAGCAGATTGATATCAAACGAGAGCTGTATCAGATCAAAGATTATATCGCTATTGAACAGGCGCG
ATTCGGCGACAAGCTGACGGTCATCTACGATATTGACGACGACGTCAGCTGCGTGATCCCGAGCCTGCTTATCCAGCCGC
TGGTGGAAAATGCCATCGTTCACGGTATTCAACCCTGTAAAGGCAAAGGCGTGGTGACGATCGGCATTAACGAGTGCGGA
AATCGGGTACGCATCAGCGTTCGCGATACGGGCAACGGTATCGATCCCGCCGTGGTCGCCCGCGTGGAAGCCGATGAGAT
GCCGGGTAACAAAATCGGCCTGCTCAATGTGCATCATCGGGTGAAACTTCTCTACGGCGAGGGTTTGCATATCCGCAATC
TGACGCCGGGAACCGAAATCGCCTTTTATGTCCCCAATAACTCTACGCCGCAGGCGCTGACGGAGTCGCTGTTGTCATGA

Upstream 100 bases:

>100_bases
TTCCGCTTTATGGTTCCACGGCTGGTCTTCTGCCGTCAGGTTTTTTATCATGTCCCTTTCTGGCCACTGACGCGGCGCAC
CCATGCACGAAATCTTTACT

Downstream 100 bases:

>100_bases
GCGGAGAAAAGATGAAAGTTATCATTGTGGAGGATGAGTTTCTGGCCCAGCAGGAGCTCTCCTGGCTTATTAACACCCAT
AGCCAGATGGAGATCGTCGG

Product: putative sensor protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 559; Mature: 559

Protein sequence:

>559_residues
MMLAVYDRAALMLICLFFLIRLRLFRELLHKSAHTPKELLAVTAIFSLFALFSTWSGVPVEGSLVNVRIIAVMSGGILFG
PWVGAIVGAIAGVHRYLIDIDGVTAVPCFITSIVAGLLSGLINRKVAREQRWKIGILAGMMCETLTMILVVVWAPSLSLG
VDIVSKIGIPMILGSVCIGFIVLLVQSVEGEKEASAARQAKLALDIANKTLPLFRHVNSDSLRQVCEIIRRDITADAVAI
TNTEHVLAYVGVGEANYQRHDDMISPTTRQAIRYGKIIIKNNDEAHRTPEIHSLMVIPLWEKGVVTGTLKIYYCHAHRIT
STLQEMAIGLSQIISTQLEVSRAEQLREMANKAELRALQSKINPHFLFNALNAISSSIRLNPDTARQLIFNLSRYLRYNI
ELKDDEQIDIKRELYQIKDYIAIEQARFGDKLTVIYDIDDDVSCVIPSLLIQPLVENAIVHGIQPCKGKGVVTIGINECG
NRVRISVRDTGNGIDPAVVARVEADEMPGNKIGLLNVHHRVKLLYGEGLHIRNLTPGTEIAFYVPNNSTPQALTESLLS

Sequences:

>Translated_559_residues
MMLAVYDRAALMLICLFFLIRLRLFRELLHKSAHTPKELLAVTAIFSLFALFSTWSGVPVEGSLVNVRIIAVMSGGILFG
PWVGAIVGAIAGVHRYLIDIDGVTAVPCFITSIVAGLLSGLINRKVAREQRWKIGILAGMMCETLTMILVVVWAPSLSLG
VDIVSKIGIPMILGSVCIGFIVLLVQSVEGEKEASAARQAKLALDIANKTLPLFRHVNSDSLRQVCEIIRRDITADAVAI
TNTEHVLAYVGVGEANYQRHDDMISPTTRQAIRYGKIIIKNNDEAHRTPEIHSLMVIPLWEKGVVTGTLKIYYCHAHRIT
STLQEMAIGLSQIISTQLEVSRAEQLREMANKAELRALQSKINPHFLFNALNAISSSIRLNPDTARQLIFNLSRYLRYNI
ELKDDEQIDIKRELYQIKDYIAIEQARFGDKLTVIYDIDDDVSCVIPSLLIQPLVENAIVHGIQPCKGKGVVTIGINECG
NRVRISVRDTGNGIDPAVVARVEADEMPGNKIGLLNVHHRVKLLYGEGLHIRNLTPGTEIAFYVPNNSTPQALTESLLS
>Mature_559_residues
MMLAVYDRAALMLICLFFLIRLRLFRELLHKSAHTPKELLAVTAIFSLFALFSTWSGVPVEGSLVNVRIIAVMSGGILFG
PWVGAIVGAIAGVHRYLIDIDGVTAVPCFITSIVAGLLSGLINRKVAREQRWKIGILAGMMCETLTMILVVVWAPSLSLG
VDIVSKIGIPMILGSVCIGFIVLLVQSVEGEKEASAARQAKLALDIANKTLPLFRHVNSDSLRQVCEIIRRDITADAVAI
TNTEHVLAYVGVGEANYQRHDDMISPTTRQAIRYGKIIIKNNDEAHRTPEIHSLMVIPLWEKGVVTGTLKIYYCHAHRIT
STLQEMAIGLSQIISTQLEVSRAEQLREMANKAELRALQSKINPHFLFNALNAISSSIRLNPDTARQLIFNLSRYLRYNI
ELKDDEQIDIKRELYQIKDYIAIEQARFGDKLTVIYDIDDDVSCVIPSLLIQPLVENAIVHGIQPCKGKGVVTIGINECG
NRVRISVRDTGNGIDPAVVARVEADEMPGNKIGLLNVHHRVKLLYGEGLHIRNLTPGTEIAFYVPNNSTPQALTESLLS

Specific function: Unknown

COG id: COG3275

COG function: function code T; Putative regulator of cell autolysis

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788723, Length=558, Percent_Identity=87.8136200716846, Blast_Score=1021, Evalue=0.0,
Organism=Escherichia coli, GI1788446, Length=513, Percent_Identity=30.6042884990253, Blast_Score=199, Evalue=3e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR010559
- InterPro:   IPR011620 [H]

Pfam domain/function: PF07694 5TM-5TMR_LYT; PF02518 HATPase_c; PF06580 His_kinase [H]

EC number: 2.7.3.-

Molecular weight: Translated: 61773; Mature: 61773

Theoretical pI: Translated: 7.99; Mature: 7.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMLAVYDRAALMLICLFFLIRLRLFRELLHKSAHTPKELLAVTAIFSLFALFSTWSGVPV
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
EGSLVNVRIIAVMSGGILFGPWVGAIVGAIAGVHRYLIDIDGVTAVPCFITSIVAGLLSG
CCCEEEEEEEEEEECCEEEHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHH
LINRKVAREQRWKIGILAGMMCETLTMILVVVWAPSLSLGVDIVSKIGIPMILGSVCIGF
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHH
IVLLVQSVEGEKEASAARQAKLALDIANKTLPLFRHVNSDSLRQVCEIIRRDITADAVAI
HHHHHHHCCCCHHHHHHHHHHHHEEHHCCCHHHHHCCCHHHHHHHHHHHHHCCCCCEEEE
TNTEHVLAYVGVGEANYQRHDDMISPTTRQAIRYGKIIIKNNDEAHRTPEIHSLMVIPLW
ECCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHCEEEEECCCCCCCCCCCCEEEEEEEE
EKGVVTGTLKIYYCHAHRITSTLQEMAIGLSQIISTQLEVSRAEQLREMANKAELRALQS
CCCEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KINPHFLFNALNAISSSIRLNPDTARQLIFNLSRYLRYNIELKDDEQIDIKRELYQIKDY
HCCHHHHHHHHHHHHHCCEECHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHH
IAIEQARFGDKLTVIYDIDDDVSCVIPSLLIQPLVENAIVHGIQPCKGKGVVTIGINECG
HHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCC
NRVRISVRDTGNGIDPAVVARVEADEMPGNKIGLLNVHHRVKLLYGEGLHIRNLTPGTEI
CEEEEEEECCCCCCCHHHEEEEECCCCCCCEEEEEEECEEEEEEECCCEEEECCCCCCEE
AFYVPNNSTPQALTESLLS
EEEECCCCCHHHHHHHHCC
>Mature Secondary Structure
MMLAVYDRAALMLICLFFLIRLRLFRELLHKSAHTPKELLAVTAIFSLFALFSTWSGVPV
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
EGSLVNVRIIAVMSGGILFGPWVGAIVGAIAGVHRYLIDIDGVTAVPCFITSIVAGLLSG
CCCEEEEEEEEEEECCEEEHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHH
LINRKVAREQRWKIGILAGMMCETLTMILVVVWAPSLSLGVDIVSKIGIPMILGSVCIGF
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHH
IVLLVQSVEGEKEASAARQAKLALDIANKTLPLFRHVNSDSLRQVCEIIRRDITADAVAI
HHHHHHHCCCCHHHHHHHHHHHHEEHHCCCHHHHHCCCHHHHHHHHHHHHHCCCCCEEEE
TNTEHVLAYVGVGEANYQRHDDMISPTTRQAIRYGKIIIKNNDEAHRTPEIHSLMVIPLW
ECCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHCEEEEECCCCCCCCCCCCEEEEEEEE
EKGVVTGTLKIYYCHAHRITSTLQEMAIGLSQIISTQLEVSRAEQLREMANKAELRALQS
CCCEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KINPHFLFNALNAISSSIRLNPDTARQLIFNLSRYLRYNIELKDDEQIDIKRELYQIKDY
HCCHHHHHHHHHHHHHCCEECHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHH
IAIEQARFGDKLTVIYDIDDDVSCVIPSLLIQPLVENAIVHGIQPCKGKGVVTIGINECG
HHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCC
NRVRISVRDTGNGIDPAVVARVEADEMPGNKIGLLNVHHRVKLLYGEGLHIRNLTPGTEI
CEEEEEEECCCCCCCHHHEEEEECCCCCCCEEEEEEECEEEEEEECCCEEEECCCCCCEE
AFYVPNNSTPQALTESLLS
EEEECCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]