Click here to switch to the map view.

The map label for this gene is yfcN [C]

Identifier: 238895852

GI number: 238895852

Start: 3795176

End: 3795727

Strand: Direct

Name: yfcN [C]

Synonym: KP1_3971

Alternate gene names: 238895852

Gene position: 3795176-3795727 (Clockwise)

Preceding gene: 238895845

Following gene: 238895857

Centisome position: 72.31

GC content: 55.98

Gene sequence:

>552_bases
ATGAAAAAGAAGACATCGCTTAGCGAGGAGGATCAGGCGCTGTTCCGTCAGCTGATGACCGGCACGCGGAAGATCAAACA
GGACACTATTGTTCACCGCCCGCAGCGCAAGAAAATTACCGAGGTTGCTCCTAAGCGTTTGCTGCAGGAACAGGTCGATA
ACAGCCACTATTTTTCCGATGAGTTTCAACCGCTACTGAATACCGAAGGCTCGACGAAATATGTCCGCCCCGACGTCAGC
CATTTCGAGCTGAAAAAGCTGCGCCGTGGAGATTATTCGCCGGAGCTGTTCCTCGATCTGCATGGGCTTACCCAGCAGCA
GGCCAAACAGGAGCTGGGCGCGCTAATTGCCGCCTGCCGCCGCGAGCATGTGTTTTGCGCCTGCGTGATGCACGGGCACG
GGAAACACATCCTCAAACAGCAAACCCCGCTGTGGCTGGCGCAACATCCGCATATTATGGCGTTTCACCAGGCACCAAAA
GAGTACGGCGGTGACGCCGCACTGCTGATATTGATTGAGGTCGAGGAGTGGCAACCGCCGGAGCTGCCGTAA

Upstream 100 bases:

>100_bases
AGCATTCTTGCGATAAGGGGCGGGGGAAAAAACAGGTTTTCCTTGCCCGAAGGGATATTGAGTCGGGTAAACTAGCGCAA
AGTATGAATGAGAGCGGACA

Downstream 100 bases:

>100_bases
CGGCGGGCTCCGGGGGGCCGTCAGATGGCGTTGGCCATCTTGAGGTTGCAGGGGCTTTTCTGCCAGAGGAACTCACCTTT
GCCGTCGGCATCCAGCGTCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MKKKTSLSEEDQALFRQLMTGTRKIKQDTIVHRPQRKKITEVAPKRLLQEQVDNSHYFSDEFQPLLNTEGSTKYVRPDVS
HFELKKLRRGDYSPELFLDLHGLTQQQAKQELGALIAACRREHVFCACVMHGHGKHILKQQTPLWLAQHPHIMAFHQAPK
EYGGDAALLILIEVEEWQPPELP

Sequences:

>Translated_183_residues
MKKKTSLSEEDQALFRQLMTGTRKIKQDTIVHRPQRKKITEVAPKRLLQEQVDNSHYFSDEFQPLLNTEGSTKYVRPDVS
HFELKKLRRGDYSPELFLDLHGLTQQQAKQELGALIAACRREHVFCACVMHGHGKHILKQQTPLWLAQHPHIMAFHQAPK
EYGGDAALLILIEVEEWQPPELP
>Mature_183_residues
MKKKTSLSEEDQALFRQLMTGTRKIKQDTIVHRPQRKKITEVAPKRLLQEQVDNSHYFSDEFQPLLNTEGSTKYVRPDVS
HFELKKLRRGDYSPELFLDLHGLTQQQAKQELGALIAACRREHVFCACVMHGHGKHILKQQTPLWLAQHPHIMAFHQAPK
EYGGDAALLILIEVEEWQPPELP

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Smr domain [H]

Homologues:

Organism=Escherichia coli, GI1788671, Length=183, Percent_Identity=91.8032786885246, Blast_Score=352, Evalue=1e-98,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002625
- InterPro:   IPR022990 [H]

Pfam domain/function: PF01713 Smr [H]

EC number: NA

Molecular weight: Translated: 21179; Mature: 21179

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKTSLSEEDQALFRQLMTGTRKIKQDTIVHRPQRKKITEVAPKRLLQEQVDNSHYFSD
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCH
EFQPLLNTEGSTKYVRPDVSHFELKKLRRGDYSPELFLDLHGLTQQQAKQELGALIAACR
HHHHHHCCCCCCEEECCCCHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH
REHVFCACVMHGHGKHILKQQTPLWLAQHPHIMAFHQAPKEYGGDAALLILIEVEEWQPP
HCCEEEEEEECCCCHHHHHHCCCEEECCCCCEEEEHHCHHHHCCCEEEEEEEEECCCCCC
ELP
CCC
>Mature Secondary Structure
MKKKTSLSEEDQALFRQLMTGTRKIKQDTIVHRPQRKKITEVAPKRLLQEQVDNSHYFSD
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCH
EFQPLLNTEGSTKYVRPDVSHFELKKLRRGDYSPELFLDLHGLTQQQAKQELGALIAACR
HHHHHHCCCCCCEEECCCCHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH
REHVFCACVMHGHGKHILKQQTPLWLAQHPHIMAFHQAPKEYGGDAALLILIEVEEWQPP
HCCEEEEEEECCCCHHHHHHCCCEEECCCCCEEEEHHCHHHHCCCEEEEEEEEECCCCCC
ELP
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA