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The map label for this gene is ybhD [H]

Identifier: 238895679

GI number: 238895679

Start: 3603784

End: 3604737

Strand: Reverse

Name: ybhD [H]

Synonym: KP1_3776

Alternate gene names: 238895679

Gene position: 3604737-3603784 (Counterclockwise)

Preceding gene: 238895682

Following gene: 238895677

Centisome position: 68.68

GC content: 63.84

Gene sequence:

>954_bases
TTGTGCAGGACCACCGTAGCGAACCCGATGATGAACGAACCCTGGCAGCGGCTGCCCGCGCTCTCTCTTAAACAGCTTCA
GTATTTCGTCACCCTGGCCCAGCTGCGCCATTTTACCGATACCGCCAGTCGGCTGGCGATTAGCCAGCCGGCGCTGAGCA
GCGCCCTGCGGCAGATTGAAACGGTACTCGGCGGTAAGCTGGTCAACCGTACCGCTGCGACGGTCACTCTGACTGAACTG
GGGGCGGCGATGTTACCCCACGCCCAGCGGATCCTCAGCGTGGCGCAGGCGGCCTTTTCCGATATGCAGCAGATCGTCGA
GGCGGGCGGCGACGGGACGGTGCGCATCGGCCTGGTGCCGTCGGTCAGTTCGCTGCTGTTTCCTCTGCTGCCGCAGACCC
TGGCCCAGGCCTTTCCGCGCCTGCGCATTGAATTTCACGATCAGACCAACGATGCGCTTATCCAGGCGCTGCTGCGCGGC
GAGATTGATTTCGGTATCGGGGCGATCGACAGCTCAGTGCCTGCTGAACTGCTGGTCTATCCGCTGCGCGAAGATCCCTT
TGTGGCGGTGCTGCACCGCGACGATCCGCTGGCCGCGCAGGCGCACTTGCCGTGGAAGCAGCTGGTGGGGCGGGATATTG
CCGTCTTCTCGAAGGGCAATATTCAACGGCTGGTGGCGGCATTAGTGGAGAGCCATCGCCTGACGCTGACCACCCGCTAC
CAGGTGGACTATATCGAAACCCTGTATGGTCTGGTGCGCTCGCGCTTAGCGGTGGCCATTCTGCCGGCGCTGTACACCAC
CCATCTGCAGGACCCGGCGCTCCAGGTCGCCCAGTTGCAGCAGCCGGCGCTGACCCGTACGGTGGCCCTGATGCGCGGCC
CGCAGGCGCTGCCGCCGCTTATCGAAGCCTGTTTTTCCCTGCTGCAGGGAGAATTGCGTCGCGCTGATGCCTGA

Upstream 100 bases:

>100_bases
TGGACATAACCACTCCGGCACAAGGATAATGCGGATACTCTAGGGGCACAGCAAACGTTTGCCCAGATGAATAAATTTAT
CACCCGATAAGCTCGGGTTA

Downstream 100 bases:

>100_bases
TCCGCACATTGATTATCGTGGCGGGGGGATCAAAAAATCCCCCGCGGCCTGACCGGCGACGGGGGATGTCCGTGTTAAAC
GCTTATGGTGTGACGATATT

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MCRTTVANPMMNEPWQRLPALSLKQLQYFVTLAQLRHFTDTASRLAISQPALSSALRQIETVLGGKLVNRTAATVTLTEL
GAAMLPHAQRILSVAQAAFSDMQQIVEAGGDGTVRIGLVPSVSSLLFPLLPQTLAQAFPRLRIEFHDQTNDALIQALLRG
EIDFGIGAIDSSVPAELLVYPLREDPFVAVLHRDDPLAAQAHLPWKQLVGRDIAVFSKGNIQRLVAALVESHRLTLTTRY
QVDYIETLYGLVRSRLAVAILPALYTTHLQDPALQVAQLQQPALTRTVALMRGPQALPPLIEACFSLLQGELRRADA

Sequences:

>Translated_317_residues
MCRTTVANPMMNEPWQRLPALSLKQLQYFVTLAQLRHFTDTASRLAISQPALSSALRQIETVLGGKLVNRTAATVTLTEL
GAAMLPHAQRILSVAQAAFSDMQQIVEAGGDGTVRIGLVPSVSSLLFPLLPQTLAQAFPRLRIEFHDQTNDALIQALLRG
EIDFGIGAIDSSVPAELLVYPLREDPFVAVLHRDDPLAAQAHLPWKQLVGRDIAVFSKGNIQRLVAALVESHRLTLTTRY
QVDYIETLYGLVRSRLAVAILPALYTTHLQDPALQVAQLQQPALTRTVALMRGPQALPPLIEACFSLLQGELRRADA
>Mature_317_residues
MCRTTVANPMMNEPWQRLPALSLKQLQYFVTLAQLRHFTDTASRLAISQPALSSALRQIETVLGGKLVNRTAATVTLTEL
GAAMLPHAQRILSVAQAAFSDMQQIVEAGGDGTVRIGLVPSVSSLLFPLLPQTLAQAFPRLRIEFHDQTNDALIQALLRG
EIDFGIGAIDSSVPAELLVYPLREDPFVAVLHRDDPLAAQAHLPWKQLVGRDIAVFSKGNIQRLVAALVESHRLTLTTRY
QVDYIETLYGLVRSRLAVAILPALYTTHLQDPALQVAQLQQPALTRTVALMRGPQALPPLIEACFSLLQGELRRADA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=289, Percent_Identity=28.3737024221453, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1788748, Length=247, Percent_Identity=27.9352226720648, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1790399, Length=248, Percent_Identity=28.2258064516129, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1787879, Length=251, Percent_Identity=27.4900398406374, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI157672245, Length=274, Percent_Identity=27.3722627737226, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1788887, Length=190, Percent_Identity=33.6842105263158, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI2367136, Length=194, Percent_Identity=26.8041237113402, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1788297, Length=256, Percent_Identity=27.734375, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787601, Length=147, Percent_Identity=29.9319727891156, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI87081904, Length=147, Percent_Identity=29.9319727891156, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34741; Mature: 34741

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCRTTVANPMMNEPWQRLPALSLKQLQYFVTLAQLRHFTDTASRLAISQPALSSALRQIE
CCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
TVLGGKLVNRTAATVTLTELGAAMLPHAQRILSVAQAAFSDMQQIVEAGGDGTVRIGLVP
HHHCCHHHCCHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC
SVSSLLFPLLPQTLAQAFPRLRIEFHDQTNDALIQALLRGEIDFGIGAIDSSVPAELLVY
CHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHEEE
PLREDPFVAVLHRDDPLAAQAHLPWKQLVGRDIAVFSKGNIQRLVAALVESHRLTLTTRY
ECCCCCEEEEEECCCCCCCCCCCCHHHHHCCCEEEECCCCHHHHHHHHHHCCCEEEEEEE
QVDYIETLYGLVRSRLAVAILPALYTTHLQDPALQVAQLQQPALTRTVALMRGPQALPPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHCCCCCCHHH
IEACFSLLQGELRRADA
HHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MCRTTVANPMMNEPWQRLPALSLKQLQYFVTLAQLRHFTDTASRLAISQPALSSALRQIE
CCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
TVLGGKLVNRTAATVTLTELGAAMLPHAQRILSVAQAAFSDMQQIVEAGGDGTVRIGLVP
HHHCCHHHCCHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC
SVSSLLFPLLPQTLAQAFPRLRIEFHDQTNDALIQALLRGEIDFGIGAIDSSVPAELLVY
CHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHEEE
PLREDPFVAVLHRDDPLAAQAHLPWKQLVGRDIAVFSKGNIQRLVAALVESHRLTLTTRY
ECCCCCEEEEEECCCCCCCCCCCCHHHHHCCCEEEECCCCHHHHHHHHHHCCCEEEEEEE
QVDYIETLYGLVRSRLAVAILPALYTTHLQDPALQVAQLQQPALTRTVALMRGPQALPPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHCCCCCCHHH
IEACFSLLQGELRRADA
HHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]