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The map label for this gene is virB10 [H]

Identifier: 238895552

GI number: 238895552

Start: 3456877

End: 3458127

Strand: Direct

Name: virB10 [H]

Synonym: KP1_3635

Alternate gene names: 238895552

Gene position: 3456877-3458127 (Clockwise)

Preceding gene: 238895551

Following gene: 238895553

Centisome position: 65.86

GC content: 55.8

Gene sequence:

>1251_bases
ATGAACGACGAAAACAAAGTGCCTGTGCCGGATGAAGCGCAGGCATCCCTGGCACACTCTGAGGATGATATTGCTACGCT
TGAGCGGGAAGCTCGCGCTAAAAGGGAGGCCGAGCTTCTCAATGCGCAGGACGACGAAGAGAAAGACCCGGTACAACCCG
CCGTTAACAAGCTGAAAAAGCGCAAACGGGGCAAAGCAACCGCCTTTCTTGCCATTGTCGCGGTCACGCTTATCTTCCTG
GCATGGGGTGGTAACTGGGTTTATCGCAATATCCTGTGGCAGCCTACGGAAGAAAAGAAACCGGACACAGCCCCGCAGAC
GAACAAAACCGATTACCGGCAGCGTAACGATCTAGGTATGTCCACCGATACAGCCGAAGAAGAGGCAGAGCAACAGGATA
ACGGCCAGAGCAGCACGGGGGGAACAGGGCAGGCGGCTCCGGCCGCCCCGCCAGAACTCAACAAAGCCAGCTTCCTTATT
CGCCGTGATGGTTCAGCCACCACACAGAACCCGGTAAAAACCCGGCAGCAGGAAATGACGCTGACATCGGCAACGACCAC
CGAACAACAGGACAGCAGCGCGGCCACAAATACCGCCGCACAGTCGCCGGGACAAAGCCCCGCACCAGTGCGCCGCATAC
CCTATAACCCTGACCTGTACATCCCGGAAAATACCTCGATCCCCTGCTCACTGGATCGCCACTTTGTATCTGACCGGGCA
GGGAAACTTCGCTGCACGGTCACTACTGACATCTGGAGCGCCAGCGGCAACACGAAGCTGATAGAGAAAGGCACCACGGC
ATCATTACTTTACCGCGCCATAGCGGAAGAAGGTATGAAGCACGGGCAAGGGCGGGCATTCATCATTGCGACGAATCTAC
GCACCCGCCAGCCGCCTTATCTCGATATCCCGTTGGTTGATACCAGCGCGGCTGGCGAGCTGGGCGAGGCTGGCGTTGAT
GGCTGGATAGATTCGCACTTCTGGGAACGGTTCGGCGGCGCGTTAATGGTCGGCATGATCCCCGATATTGGCGCATGGGC
ATCCAACAGTGCGGGTAAAAAAGACCGCAATACGGACTATACGGAAAACAGCCGCCAGGCTATGGCAGATATGGCGCGTA
CTACGCTGGAGAACAGCATCAATATTCCCCCAACGCTCTATAAGAATCAGGGCGAGATCATCAACCTGATCACAGGCGAG
GATATTGATTTTTCCAACATCTATACACTGAGGTTGAAAAATGACCGCTAA

Upstream 100 bases:

>100_bases
GATGGTTCCACCGTATCCCGGCAGGTGGAAAGAGTGGAAAAACCAGAATCCAGGTAACCTATAAAAATAGTTTTATATTT
TTATAAAAGGGAACGTGCAT

Downstream 100 bases:

>100_bases
GAATATTTCCCTCGACCGCTATAAACAGCGTTTCTTTGGCGACTTTCTGGAGCTTCCTGGCCTGACGGAGATCGCCGTCA
ACCGTCCAGGTGAGCTGTAT

Product: type IV secretory pathway VirB10 component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 416; Mature: 416

Protein sequence:

>416_residues
MNDENKVPVPDEAQASLAHSEDDIATLEREARAKREAELLNAQDDEEKDPVQPAVNKLKKRKRGKATAFLAIVAVTLIFL
AWGGNWVYRNILWQPTEEKKPDTAPQTNKTDYRQRNDLGMSTDTAEEEAEQQDNGQSSTGGTGQAAPAAPPELNKASFLI
RRDGSATTQNPVKTRQQEMTLTSATTTEQQDSSAATNTAAQSPGQSPAPVRRIPYNPDLYIPENTSIPCSLDRHFVSDRA
GKLRCTVTTDIWSASGNTKLIEKGTTASLLYRAIAEEGMKHGQGRAFIIATNLRTRQPPYLDIPLVDTSAAGELGEAGVD
GWIDSHFWERFGGALMVGMIPDIGAWASNSAGKKDRNTDYTENSRQAMADMARTTLENSINIPPTLYKNQGEIINLITGE
DIDFSNIYTLRLKNDR

Sequences:

>Translated_416_residues
MNDENKVPVPDEAQASLAHSEDDIATLEREARAKREAELLNAQDDEEKDPVQPAVNKLKKRKRGKATAFLAIVAVTLIFL
AWGGNWVYRNILWQPTEEKKPDTAPQTNKTDYRQRNDLGMSTDTAEEEAEQQDNGQSSTGGTGQAAPAAPPELNKASFLI
RRDGSATTQNPVKTRQQEMTLTSATTTEQQDSSAATNTAAQSPGQSPAPVRRIPYNPDLYIPENTSIPCSLDRHFVSDRA
GKLRCTVTTDIWSASGNTKLIEKGTTASLLYRAIAEEGMKHGQGRAFIIATNLRTRQPPYLDIPLVDTSAAGELGEAGVD
GWIDSHFWERFGGALMVGMIPDIGAWASNSAGKKDRNTDYTENSRQAMADMARTTLENSINIPPTLYKNQGEIINLITGE
DIDFSNIYTLRLKNDR
>Mature_416_residues
MNDENKVPVPDEAQASLAHSEDDIATLEREARAKREAELLNAQDDEEKDPVQPAVNKLKKRKRGKATAFLAIVAVTLIFL
AWGGNWVYRNILWQPTEEKKPDTAPQTNKTDYRQRNDLGMSTDTAEEEAEQQDNGQSSTGGTGQAAPAAPPELNKASFLI
RRDGSATTQNPVKTRQQEMTLTSATTTEQQDSSAATNTAAQSPGQSPAPVRRIPYNPDLYIPENTSIPCSLDRHFVSDRA
GKLRCTVTTDIWSASGNTKLIEKGTTASLLYRAIAEEGMKHGQGRAFIIATNLRTRQPPYLDIPLVDTSAAGELGEAGVD
GWIDSHFWERFGGALMVGMIPDIGAWASNSAGKKDRNTDYTENSRQAMADMARTTLENSINIPPTLYKNQGEIINLITGE
DIDFSNIYTLRLKNDR

Specific function: The virB system could be required for the establishment of the replication niche in the host [H]

COG id: COG2948

COG function: function code U; Type IV secretory pathway, VirB10 components

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbI/virB10 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005498 [H]

Pfam domain/function: PF03743 TrbI [H]

EC number: NA

Molecular weight: Translated: 45695; Mature: 45695

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDENKVPVPDEAQASLAHSEDDIATLEREARAKREAELLNAQDDEEKDPVQPAVNKLKK
CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
RKRGKATAFLAIVAVTLIFLAWGGNWVYRNILWQPTEEKKPDTAPQTNKTDYRQRNDLGM
HHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCC
STDTAEEEAEQQDNGQSSTGGTGQAAPAAPPELNKASFLIRRDGSATTQNPVKTRQQEMT
CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHE
LTSATTTEQQDSSAATNTAAQSPGQSPAPVRRIPYNPDLYIPENTSIPCSLDRHFVSDRA
EEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHCCC
GKLRCTVTTDIWSASGNTKLIEKGTTASLLYRAIAEEGMKHGQGRAFIIATNLRTRQPPY
CEEEEEEEEEEECCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCE
LDIPLVDTSAAGELGEAGVDGWIDSHFWERFGGALMVGMIPDIGAWASNSAGKKDRNTDY
EEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCC
TENSRQAMADMARTTLENSINIPPTLYKNQGEIINLITGEDIDFSNIYTLRLKNDR
CCHHHHHHHHHHHHHHHCCCCCCCCEECCCCCEEEEEECCCCCCCCEEEEEECCCC
>Mature Secondary Structure
MNDENKVPVPDEAQASLAHSEDDIATLEREARAKREAELLNAQDDEEKDPVQPAVNKLKK
CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
RKRGKATAFLAIVAVTLIFLAWGGNWVYRNILWQPTEEKKPDTAPQTNKTDYRQRNDLGM
HHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCC
STDTAEEEAEQQDNGQSSTGGTGQAAPAAPPELNKASFLIRRDGSATTQNPVKTRQQEMT
CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHE
LTSATTTEQQDSSAATNTAAQSPGQSPAPVRRIPYNPDLYIPENTSIPCSLDRHFVSDRA
EEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHCCC
GKLRCTVTTDIWSASGNTKLIEKGTTASLLYRAIAEEGMKHGQGRAFIIATNLRTRQPPY
CEEEEEEEEEEECCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCE
LDIPLVDTSAAGELGEAGVDGWIDSHFWERFGGALMVGMIPDIGAWASNSAGKKDRNTDY
EEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCC
TENSRQAMADMARTTLENSINIPPTLYKNQGEIINLITGEDIDFSNIYTLRLKNDR
CCHHHHHHHHHHHHHHHCCCCCCCCEECCCCCEEEEEECCCCCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11830669; 12271122 [H]