Click here to switch to the map view.

The map label for this gene is ycgB [H]

Identifier: 238895369

GI number: 238895369

Start: 3256726

End: 3258258

Strand: Direct

Name: ycgB [H]

Synonym: KP1_3433

Alternate gene names: 238895369

Gene position: 3256726-3258258 (Clockwise)

Preceding gene: 238895365

Following gene: 238895371

Centisome position: 62.05

GC content: 55.38

Gene sequence:

>1533_bases
ATGGCTACGATTGACTCCATGAACAGGGACACCACCCGTTTAAGCGATGGACCCGACTGGACGTTCGAGTTACTGGAAAC
CTACCTGGCCGAAGTGGACCGGGTCGCCAAGCTCTATCGTCTTGACACCTACCCGCACCAGATCGAAGTCATTACTTCCG
AGCAGATGATGGACGCCTACTCCAGCGTCGGCATGCCCATCAACTATCCGCACTGGTCGTTTGGCAAAAAATTTATTGAG
ACCGAGCAGGCCTATAAGCACGGTCAGCAGGGTCTGGCGTATGAGATAGTCATCAACTCCAACCCCTGTATCGCCTACCT
GATGGAGGAAAACACCATCACCATGCAGGCGCTGGTGATGGCCCATGCCTGCTACGGGCATAACTCGTTTTTTAAAAATA
ACTATCTGTTTCGCAGCTGGACCGACGCCAGCTCGATCATCGACTATCTGATCTTTGCCCGTAAGTACATCACCGAGTGC
GAAGAGCGCTATGGCGTCGACGAAGTAGAGAAACTGCTCGACTCCTGCCACGCGCTGATGAACTACGGCGTCGACCGCTA
TAAACGTCCGCAAAAAATCTCTCTGCAGGAGGAGAAAGCGCGGCAGAAAAGCCGGGAAGAGTATCTGCAAAGCCAGGTGA
ATATGCTGTGGCGCACCCTACCGAAGCGCGAAGAGGAAAAAGCGATTGAATCCGCTCGTCGCTACCCTTCCGAACCGCAG
GAGAACCTGCTGTACTTTATGGAGAAGAACGCCCCGCTGCTCGAACCGTGGCAGCGCGAGATCCTGCGCATCGTGCGTAA
AGTCAGCCAGTATTTCTACCCGCAGAAACAGACCCAGGTGATGAACGAGGGGTGGGCCACCTTCTGGCACTACACCATCC
TCAACCATCTCTACGATGAAGGGAAAGTGACTGAGCGCTTTATGCTGGAGTTTCTCCACAGCCATACCAACGTGGTGTTC
CAGCCGCCGTACAACAGTCCGTGGTACAGCGGGATTAACCCCTACGCGCTGGGCTTCGCCATGTTCCAGGACATCAAGCG
CATCTGTCAGTCGCCCACGGAAGAGGATAAGTACTGGTTCCCCGATATCGCCGGTTCTGACTGGCTGGAAACGCTGCATT
TCGCCATGCGCGACTTTAAGGATGAAAGCTTTATCAGTCAGTTCCTGTCGCCGAAGATCATGCGCGATTTCCGCTTCTTT
ACCGTGCTCGACGACGATCACAACAATTATCTGGAGATCTCGGCGATTCACAACGAAGAGGGTTATCGCGAGATCCGCAA
TAAGCTCTCCGCGCAGTATAACCTCAGCAATCTTGAGCCGAACATCCAGGTGTGGAACGTTGACCTGCGCGGCGACCGAT
CGCTGACCTTGCGCTATGTGCCGCACAACCGCGTCCCGCTGGACAAAGGCCGGCGCGAAGTGCTGAAGCATGTGCATCGT
CTGTGGGGGTTCGATGTGCTGCTGGAGCAGCAGAACGCCGACGGCAGCATTGAGCTGTTGGACCGCTGCCCGGCGCGGCC
GAACGCGCTATAG

Upstream 100 bases:

>100_bases
AGAAAAGCGATTGGCGTACAGCACAGTTTGCTGCACCGTGTTCTATGCTTGTTTAGAGGTTTTCCGTTCAGAGAAAACCA
ACAACAACGAGGGCGCGCTA

Downstream 100 bases:

>100_bases
CATTGCGGGGCGAGTAAAATAACAAAGGGGGCCATTGGCCCCCTTGTTCTGTATATCGATCGCGAAAAGCCCGCTTAACG
CATATTCATGGCTAAATCAC

Product: SpoVR family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 510; Mature: 509

Protein sequence:

>510_residues
MATIDSMNRDTTRLSDGPDWTFELLETYLAEVDRVAKLYRLDTYPHQIEVITSEQMMDAYSSVGMPINYPHWSFGKKFIE
TEQAYKHGQQGLAYEIVINSNPCIAYLMEENTITMQALVMAHACYGHNSFFKNNYLFRSWTDASSIIDYLIFARKYITEC
EERYGVDEVEKLLDSCHALMNYGVDRYKRPQKISLQEEKARQKSREEYLQSQVNMLWRTLPKREEEKAIESARRYPSEPQ
ENLLYFMEKNAPLLEPWQREILRIVRKVSQYFYPQKQTQVMNEGWATFWHYTILNHLYDEGKVTERFMLEFLHSHTNVVF
QPPYNSPWYSGINPYALGFAMFQDIKRICQSPTEEDKYWFPDIAGSDWLETLHFAMRDFKDESFISQFLSPKIMRDFRFF
TVLDDDHNNYLEISAIHNEEGYREIRNKLSAQYNLSNLEPNIQVWNVDLRGDRSLTLRYVPHNRVPLDKGRREVLKHVHR
LWGFDVLLEQQNADGSIELLDRCPARPNAL

Sequences:

>Translated_510_residues
MATIDSMNRDTTRLSDGPDWTFELLETYLAEVDRVAKLYRLDTYPHQIEVITSEQMMDAYSSVGMPINYPHWSFGKKFIE
TEQAYKHGQQGLAYEIVINSNPCIAYLMEENTITMQALVMAHACYGHNSFFKNNYLFRSWTDASSIIDYLIFARKYITEC
EERYGVDEVEKLLDSCHALMNYGVDRYKRPQKISLQEEKARQKSREEYLQSQVNMLWRTLPKREEEKAIESARRYPSEPQ
ENLLYFMEKNAPLLEPWQREILRIVRKVSQYFYPQKQTQVMNEGWATFWHYTILNHLYDEGKVTERFMLEFLHSHTNVVF
QPPYNSPWYSGINPYALGFAMFQDIKRICQSPTEEDKYWFPDIAGSDWLETLHFAMRDFKDESFISQFLSPKIMRDFRFF
TVLDDDHNNYLEISAIHNEEGYREIRNKLSAQYNLSNLEPNIQVWNVDLRGDRSLTLRYVPHNRVPLDKGRREVLKHVHR
LWGFDVLLEQQNADGSIELLDRCPARPNAL
>Mature_509_residues
ATIDSMNRDTTRLSDGPDWTFELLETYLAEVDRVAKLYRLDTYPHQIEVITSEQMMDAYSSVGMPINYPHWSFGKKFIET
EQAYKHGQQGLAYEIVINSNPCIAYLMEENTITMQALVMAHACYGHNSFFKNNYLFRSWTDASSIIDYLIFARKYITECE
ERYGVDEVEKLLDSCHALMNYGVDRYKRPQKISLQEEKARQKSREEYLQSQVNMLWRTLPKREEEKAIESARRYPSEPQE
NLLYFMEKNAPLLEPWQREILRIVRKVSQYFYPQKQTQVMNEGWATFWHYTILNHLYDEGKVTERFMLEFLHSHTNVVFQ
PPYNSPWYSGINPYALGFAMFQDIKRICQSPTEEDKYWFPDIAGSDWLETLHFAMRDFKDESFISQFLSPKIMRDFRFFT
VLDDDHNNYLEISAIHNEEGYREIRNKLSAQYNLSNLEPNIQVWNVDLRGDRSLTLRYVPHNRVPLDKGRREVLKHVHRL
WGFDVLLEQQNADGSIELLDRCPARPNAL

Specific function: Unknown

COG id: COG2719

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis spoVR [H]

Homologues:

Organism=Escherichia coli, GI1787437, Length=510, Percent_Identity=93.921568627451, Blast_Score=1022, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007390 [H]

Pfam domain/function: PF04293 SpoVR [H]

EC number: NA

Molecular weight: Translated: 60576; Mature: 60445

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATIDSMNRDTTRLSDGPDWTFELLETYLAEVDRVAKLYRLDTYPHQIEVITSEQMMDAY
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHH
SSVGMPINYPHWSFGKKFIETEQAYKHGQQGLAYEIVINSNPCIAYLMEENTITMQALVM
HHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEECCCHHHHHHHH
AHACYGHNSFFKNNYLFRSWTDASSIIDYLIFARKYITECEERYGVDEVEKLLDSCHALM
HHHHHCCCCHHCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
NYGVDRYKRPQKISLQEEKARQKSREEYLQSQVNMLWRTLPKREEEKAIESARRYPSEPQ
HCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCH
ENLLYFMEKNAPLLEPWQREILRIVRKVSQYFYPQKQTQVMNEGWATFWHYTILNHLYDE
HHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHCC
GKVTERFMLEFLHSHTNVVFQPPYNSPWYSGINPYALGFAMFQDIKRICQSPTEEDKYWF
CCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDIAGSDWLETLHFAMRDFKDESFISQFLSPKIMRDFRFFTVLDDDHNNYLEISAIHNEE
CCCCCHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHCEEEEEEECCCCCEEEEEEECCCH
GYREIRNKLSAQYNLSNLEPNIQVWNVDLRGDRSLTLRYVPHNRVPLDKGRREVLKHVHR
HHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHH
LWGFDVLLEQQNADGSIELLDRCPARPNAL
HHCHHHEEECCCCCCCHHHHHCCCCCCCCC
>Mature Secondary Structure 
ATIDSMNRDTTRLSDGPDWTFELLETYLAEVDRVAKLYRLDTYPHQIEVITSEQMMDAY
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHH
SSVGMPINYPHWSFGKKFIETEQAYKHGQQGLAYEIVINSNPCIAYLMEENTITMQALVM
HHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEECCCHHHHHHHH
AHACYGHNSFFKNNYLFRSWTDASSIIDYLIFARKYITECEERYGVDEVEKLLDSCHALM
HHHHHCCCCHHCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
NYGVDRYKRPQKISLQEEKARQKSREEYLQSQVNMLWRTLPKREEEKAIESARRYPSEPQ
HCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCH
ENLLYFMEKNAPLLEPWQREILRIVRKVSQYFYPQKQTQVMNEGWATFWHYTILNHLYDE
HHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHCC
GKVTERFMLEFLHSHTNVVFQPPYNSPWYSGINPYALGFAMFQDIKRICQSPTEEDKYWF
CCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDIAGSDWLETLHFAMRDFKDESFISQFLSPKIMRDFRFFTVLDDDHNNYLEISAIHNEE
CCCCCHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHCEEEEEEECCCCCEEEEEEECCCH
GYREIRNKLSAQYNLSNLEPNIQVWNVDLRGDRSLTLRYVPHNRVPLDKGRREVLKHVHR
HHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHH
LWGFDVLLEQQNADGSIELLDRCPARPNAL
HHCHHHEEECCCCCCCHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 7906689 [H]