Click here to switch to the map view.

The map label for this gene is ybhD [H]

Identifier: 238895334

GI number: 238895334

Start: 3217932

End: 3218831

Strand: Direct

Name: ybhD [H]

Synonym: KP1_3394

Alternate gene names: 238895334

Gene position: 3217932-3218831 (Clockwise)

Preceding gene: 238895333

Following gene: 238895338

Centisome position: 61.31

GC content: 61.33

Gene sequence:

>900_bases
ATGCCCGTAAATTTTGACTTCAACGATCTCTACGCCTTTCGCGCCCTGATGGAATATGGCAGTTTTCGGCTGGCGGCCGA
ATCCATCTGCCTGTCGCAGTCGGCCCTTAGCCGACGCATCGAAAAGCTGGAGACGGCGCTGGGCAACCGGCTGTTCGATC
GCACCACCCGGCGGGTGACCCTCACGCTGTATGGACAAAATTTTGCCGAACGTTCGGAGCAGCTGCTGGCCCATGTCGAG
ACGGTGCTGGCGGATATCAGCCAGGTCAGCAAGGCGCGCACCGGGCTGGTGACGGTGGCGACAGTGCCTTCCGCCGCCTA
CTACTTTATGCCGGAAATAATCCGCAGCTTTCAGGCGCGTTATCCCCAGGTGCGCATCCGGTTGATTGACAGCAGCGTCG
GGAATGTGATCGAGGCGGTCAGCAGCGGACAGGCTGACTTTGGCCTCTGCTTTGCCAAAAACCTGCCAGCCAGTATCGAA
TTCACCCCTCTTGCCGACGACCGCTATGTGGCCGCCTGTCGGCACGATCATCCGCTGGCGCGCAAGACGCACCTAAGCTG
GCAGGCGTATTTTGAACAGGATTATATTGGCCTGGATCGGGTCTCCGGCAACCGGACGCTGCTTGACCGGGAGCTGGCGC
ATCTGACGCCGGCGCGGCCAAGTATCTGCGAAACCCGCCACGTCACCACGATGCTGGGGATGGTGGAAGCGGGCATCGGC
ATTGCCGCCGTGCCCGCGATGTCGATGCCCGCCGGGGAGCATTCCGTTCTCCGCGCTGTGCCGCTCACCGACCCGGTGGT
CACGCGTACGGTAGGCCTGATCCGCCTCAGCGGCCGTATTCAGTCCTACGTGGCGGCAGAGCTGGAGAAGCTGATTATTG
AACAGTATCCTTCTGGCTGA

Upstream 100 bases:

>100_bases
CGCGGTTTCCCGCGCGCCCGAAGTCCTGCCCGATATGCTACCCGCCATCGCCCCTCGCCGGACGGGGCGATGGCGCCAGA
GAGCCGATAAGGATGCCGCC

Downstream 100 bases:

>100_bases
CCGGCGCGGCGGCGGCTACGCTTCGCATACCGGTGGCGTGGATGGTCTCCTGCGCCGCCGGTGACGCCAGATACGTCAGC
AGCGCCTTGCCTTCCTGCGG

Product: putative LysR-family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MPVNFDFNDLYAFRALMEYGSFRLAAESICLSQSALSRRIEKLETALGNRLFDRTTRRVTLTLYGQNFAERSEQLLAHVE
TVLADISQVSKARTGLVTVATVPSAAYYFMPEIIRSFQARYPQVRIRLIDSSVGNVIEAVSSGQADFGLCFAKNLPASIE
FTPLADDRYVAACRHDHPLARKTHLSWQAYFEQDYIGLDRVSGNRTLLDRELAHLTPARPSICETRHVTTMLGMVEAGIG
IAAVPAMSMPAGEHSVLRAVPLTDPVVTRTVGLIRLSGRIQSYVAAELEKLIIEQYPSG

Sequences:

>Translated_299_residues
MPVNFDFNDLYAFRALMEYGSFRLAAESICLSQSALSRRIEKLETALGNRLFDRTTRRVTLTLYGQNFAERSEQLLAHVE
TVLADISQVSKARTGLVTVATVPSAAYYFMPEIIRSFQARYPQVRIRLIDSSVGNVIEAVSSGQADFGLCFAKNLPASIE
FTPLADDRYVAACRHDHPLARKTHLSWQAYFEQDYIGLDRVSGNRTLLDRELAHLTPARPSICETRHVTTMLGMVEAGIG
IAAVPAMSMPAGEHSVLRAVPLTDPVVTRTVGLIRLSGRIQSYVAAELEKLIIEQYPSG
>Mature_298_residues
PVNFDFNDLYAFRALMEYGSFRLAAESICLSQSALSRRIEKLETALGNRLFDRTTRRVTLTLYGQNFAERSEQLLAHVET
VLADISQVSKARTGLVTVATVPSAAYYFMPEIIRSFQARYPQVRIRLIDSSVGNVIEAVSSGQADFGLCFAKNLPASIEF
TPLADDRYVAACRHDHPLARKTHLSWQAYFEQDYIGLDRVSGNRTLLDRELAHLTPARPSICETRHVTTMLGMVEAGIGI
AAVPAMSMPAGEHSVLRAVPLTDPVVTRTVGLIRLSGRIQSYVAAELEKLIIEQYPSG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=291, Percent_Identity=37.1134020618557, Blast_Score=220, Evalue=1e-58,
Organism=Escherichia coli, GI1788748, Length=293, Percent_Identity=32.7645051194539, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1789204, Length=239, Percent_Identity=28.4518828451883, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI157672245, Length=278, Percent_Identity=27.6978417266187, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787879, Length=268, Percent_Identity=28.3582089552239, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI1790399, Length=287, Percent_Identity=27.1777003484321, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787601, Length=180, Percent_Identity=28.8888888888889, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI2367136, Length=240, Percent_Identity=26.6666666666667, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788887, Length=244, Percent_Identity=25, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1786401, Length=133, Percent_Identity=34.5864661654135, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1790208, Length=163, Percent_Identity=31.9018404907975, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1787530, Length=256, Percent_Identity=24.609375, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788296, Length=166, Percent_Identity=30.7228915662651, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788481, Length=245, Percent_Identity=26.530612244898, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787806, Length=279, Percent_Identity=27.5985663082437, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790262, Length=271, Percent_Identity=25.4612546125461, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI87081904, Length=176, Percent_Identity=25.5681818181818, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1787128, Length=137, Percent_Identity=30.6569343065693, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1786713, Length=270, Percent_Identity=25.9259259259259, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1786508, Length=182, Percent_Identity=26.9230769230769, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1787589, Length=133, Percent_Identity=31.5789473684211, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786448, Length=173, Percent_Identity=32.3699421965318, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI87081766, Length=180, Percent_Identity=28.8888888888889, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1788706, Length=169, Percent_Identity=27.2189349112426, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI87082024, Length=173, Percent_Identity=26.0115606936416, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788297, Length=246, Percent_Identity=23.1707317073171, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI87082132, Length=151, Percent_Identity=25.8278145695364, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33153; Mature: 33022

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVNFDFNDLYAFRALMEYGSFRLAAESICLSQSALSRRIEKLETALGNRLFDRTTRRVT
CCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
LTLYGQNFAERSEQLLAHVETVLADISQVSKARTGLVTVATVPSAAYYFMPEIIRSFQAR
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHC
YPQVRIRLIDSSVGNVIEAVSSGQADFGLCFAKNLPASIEFTPLADDRYVAACRHDHPLA
CCEEEEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEECCCCCEEEEECCCCCCC
RKTHLSWQAYFEQDYIGLDRVSGNRTLLDRELAHLTPARPSICETRHVTTMLGMVEAGIG
HHHCCHHHHHHHHCCCCCEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCC
IAAVPAMSMPAGEHSVLRAVPLTDPVVTRTVGLIRLSGRIQSYVAAELEKLIIEQYPSG
EEECCCCCCCCCCCHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PVNFDFNDLYAFRALMEYGSFRLAAESICLSQSALSRRIEKLETALGNRLFDRTTRRVT
CCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
LTLYGQNFAERSEQLLAHVETVLADISQVSKARTGLVTVATVPSAAYYFMPEIIRSFQAR
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHC
YPQVRIRLIDSSVGNVIEAVSSGQADFGLCFAKNLPASIEFTPLADDRYVAACRHDHPLA
CCEEEEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEECCCCCEEEEECCCCCCC
RKTHLSWQAYFEQDYIGLDRVSGNRTLLDRELAHLTPARPSICETRHVTTMLGMVEAGIG
HHHCCHHHHHHHHCCCCCEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCC
IAAVPAMSMPAGEHSVLRAVPLTDPVVTRTVGLIRLSGRIQSYVAAELEKLIIEQYPSG
EEECCCCCCCCCCCHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]