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The map label for this gene is sufD [H]

Identifier: 238895188

GI number: 238895188

Start: 3068746

End: 3070020

Strand: Reverse

Name: sufD [H]

Synonym: KP1_3234

Alternate gene names: 238895188

Gene position: 3070020-3068746 (Counterclockwise)

Preceding gene: 238895189

Following gene: 238895187

Centisome position: 58.49

GC content: 62.27

Gene sequence:

>1275_bases
ATGGCTGGCTTACCGAACAGCAGTAACGCGCTGCAGCAGTGGCACCATCTGTTTGAAGCGCAGGGCGGCCCGCGTACCCC
GGAGGCCAGTCAGCATCTGCAGCAGCTGCTGCGCCTTGGGCTGCCGACGCGCAAGCACGAGGACTGGAAATACACTCCGC
TGGATGCCCTACTTAACGGTCGCTTTGTCGCCGATGAGGGGGCCTCTCTCAGTGCTGAACAGCGTGATGCGCTGGCGCTG
CCGCTGGACGCCTGGCGGCTGGTGTTTATCGATGGCTGCTATCATCCTCAGCTGAGCGACGATCTTGCCGCCAGCGGCGT
GGAGGTCAGTGTCGATAATCAGCGCCAGCATCTGCCGGATGCCCTGCAGCCGGAGGTGTTTCTCCATCTGACCGAAAGCC
TGGCCCAGACGGTGACCCGCATTCGCGTGCCGCGCAACCGCCGCCTGGATAAACCTCTGCTGCTGATGCATATCACCAGT
GGCCTGACCGGCGATGCGCTGAATACCGCCCACTATCGCCATCACCTGGCGCTGGAGAGCGGGGCGGAGGCGACGATTGT
CGAGCATTACCTGAGCCTCAATGAGCAGCCGCATTTCACCGGCGGGCGATTGACCATGACGGTGGCCGATAACGCGCACC
TCCAGCATATCAAGCTGGCATTTGAGAATGCCCGCAGCTATCACTTCGCCCATAATGACCTGCTGCTGGGCCGCGACGCC
TCGGCCTTCAGCAGCAGTTTCCTGCTTGGCGGCCAGGTGCTGCGTCACCAGACCAGCACCCGCCTGGGCGGCGAAAACAG
CAACCTGCGCCTCAATTCGCTGGCGATGCCGGTGAAAAATGAGGTCTGCGATAGCCGCACCTGGCTCGACCATCAGGTCG
GCTACTGCACCAGCCGCCAGCTGCACAAAACCATCGTCAGCGATAAGGGGCGGGCGGTGTTTAACGGGCTGATCAACGTC
GCGCCGCTCGCGCTGAAAACCGACGGTCAGATGACCAACAATAATCTGCTGCTCGGGCGGCTGGCGGAGGTCGACACCAA
ACCGCAGCTGGAAATTTACGCCGATGACGTGAAATGCAGCCACGGGGCGACGGTGGGGCGCATTGACGAAGAGCAGCTGT
TCTATCTGCGCTCGCGCGGTATCGAACAGCAGGCGGCGCAGCAGATGATCCTCTACGCCTTTGCCGCCGAGCTCACCGAG
GCTATCCGCAGCGACGCGCTCAAAGAGCAGGTGCTGGCGCGTATTGGACAGCGTTTGCCGGGAGGCACTGTATGA

Upstream 100 bases:

>100_bases
CTTGACTATATCAAGCCGGACTATGTCCATGTGCTGTATCAGGGACGGATTGTGAAGTCGGGCGATTTCTCTCTGGTCAA
ACAGCTGGAGGAGCAGGGCT

Downstream 100 bases:

>100_bases
CATTTTCAGTAGAACAGGTTCGCGCCGATTTTCCGGTACTGAACCGGGAGGTCAACGGTCAGCCGTTGGTCTATCTCGAC
AGCGCCGCCAGCGCCCAGAA

Product: cysteine desulfurase activator complex subunit SufD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 424; Mature: 423

Protein sequence:

>424_residues
MAGLPNSSNALQQWHHLFEAQGGPRTPEASQHLQQLLRLGLPTRKHEDWKYTPLDALLNGRFVADEGASLSAEQRDALAL
PLDAWRLVFIDGCYHPQLSDDLAASGVEVSVDNQRQHLPDALQPEVFLHLTESLAQTVTRIRVPRNRRLDKPLLLMHITS
GLTGDALNTAHYRHHLALESGAEATIVEHYLSLNEQPHFTGGRLTMTVADNAHLQHIKLAFENARSYHFAHNDLLLGRDA
SAFSSSFLLGGQVLRHQTSTRLGGENSNLRLNSLAMPVKNEVCDSRTWLDHQVGYCTSRQLHKTIVSDKGRAVFNGLINV
APLALKTDGQMTNNNLLLGRLAEVDTKPQLEIYADDVKCSHGATVGRIDEEQLFYLRSRGIEQQAAQQMILYAFAAELTE
AIRSDALKEQVLARIGQRLPGGTV

Sequences:

>Translated_424_residues
MAGLPNSSNALQQWHHLFEAQGGPRTPEASQHLQQLLRLGLPTRKHEDWKYTPLDALLNGRFVADEGASLSAEQRDALAL
PLDAWRLVFIDGCYHPQLSDDLAASGVEVSVDNQRQHLPDALQPEVFLHLTESLAQTVTRIRVPRNRRLDKPLLLMHITS
GLTGDALNTAHYRHHLALESGAEATIVEHYLSLNEQPHFTGGRLTMTVADNAHLQHIKLAFENARSYHFAHNDLLLGRDA
SAFSSSFLLGGQVLRHQTSTRLGGENSNLRLNSLAMPVKNEVCDSRTWLDHQVGYCTSRQLHKTIVSDKGRAVFNGLINV
APLALKTDGQMTNNNLLLGRLAEVDTKPQLEIYADDVKCSHGATVGRIDEEQLFYLRSRGIEQQAAQQMILYAFAAELTE
AIRSDALKEQVLARIGQRLPGGTV
>Mature_423_residues
AGLPNSSNALQQWHHLFEAQGGPRTPEASQHLQQLLRLGLPTRKHEDWKYTPLDALLNGRFVADEGASLSAEQRDALALP
LDAWRLVFIDGCYHPQLSDDLAASGVEVSVDNQRQHLPDALQPEVFLHLTESLAQTVTRIRVPRNRRLDKPLLLMHITSG
LTGDALNTAHYRHHLALESGAEATIVEHYLSLNEQPHFTGGRLTMTVADNAHLQHIKLAFENARSYHFAHNDLLLGRDAS
AFSSSFLLGGQVLRHQTSTRLGGENSNLRLNSLAMPVKNEVCDSRTWLDHQVGYCTSRQLHKTIVSDKGRAVFNGLINVA
PLALKTDGQMTNNNLLLGRLAEVDTKPQLEIYADDVKCSHGATVGRIDEEQLFYLRSRGIEQQAAQQMILYAFAAELTEA
IRSDALKEQVLARIGQRLPGGTV

Specific function: The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake fro

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI1787971, Length=422, Percent_Identity=75.5924170616114, Blast_Score=644, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 47042; Mature: 46911

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGLPNSSNALQQWHHLFEAQGGPRTPEASQHLQQLLRLGLPTRKHEDWKYTPLDALLNG
CCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCC
RFVADEGASLSAEQRDALALPLDAWRLVFIDGCYHPQLSDDLAASGVEVSVDNQRQHLPD
EEEECCCCCCCCCCCCCEECCCCCEEEEEEECCCCCCCCHHHHHCCCEEEECCCHHHCCC
ALQPEVFLHLTESLAQTVTRIRVPRNRRLDKPLLLMHITSGLTGDALNTAHYRHHLALES
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCC
GAEATIVEHYLSLNEQPHFTGGRLTMTVADNAHLQHIKLAFENARSYHFAHNDLLLGRDA
CCCHHHHHHHHHCCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECCCEEECCCC
SAFSSSFLLGGQVLRHQTSTRLGGENSNLRLNSLAMPVKNEVCDSRTWLDHQVGYCTSRQ
HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHCCCCHHHHHCCCHHHHH
LHKTIVSDKGRAVFNGLINVAPLALKTDGQMTNNNLLLGRLAEVDTKPQLEIYADDVKCS
HHHHHHCCCCHHHHHHHHHHCCEEEECCCCCCCCCEEEEEHHCCCCCCCEEEEECCEECC
HGATVGRIDEEQLFYLRSRGIEQQAAQQMILYAFAAELTEAIRSDALKEQVLARIGQRLP
CCCEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GGTV
CCCC
>Mature Secondary Structure 
AGLPNSSNALQQWHHLFEAQGGPRTPEASQHLQQLLRLGLPTRKHEDWKYTPLDALLNG
CCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCC
RFVADEGASLSAEQRDALALPLDAWRLVFIDGCYHPQLSDDLAASGVEVSVDNQRQHLPD
EEEECCCCCCCCCCCCCEECCCCCEEEEEEECCCCCCCCHHHHHCCCEEEECCCHHHCCC
ALQPEVFLHLTESLAQTVTRIRVPRNRRLDKPLLLMHITSGLTGDALNTAHYRHHLALES
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCC
GAEATIVEHYLSLNEQPHFTGGRLTMTVADNAHLQHIKLAFENARSYHFAHNDLLLGRDA
CCCHHHHHHHHHCCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECCCEEECCCC
SAFSSSFLLGGQVLRHQTSTRLGGENSNLRLNSLAMPVKNEVCDSRTWLDHQVGYCTSRQ
HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHCCCCHHHHHCCCHHHHH
LHKTIVSDKGRAVFNGLINVAPLALKTDGQMTNNNLLLGRLAEVDTKPQLEIYADDVKCS
HHHHHHCCCCHHHHHHHHHHCCEEEECCCCCCCCCEEEEEHHCCCCCCCEEEEECCEECC
HGATVGRIDEEQLFYLRSRGIEQQAAQQMILYAFAAELTEAIRSDALKEQVLARIGQRLP
CCCEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GGTV
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 10322040 [H]