Click here to switch to the map view.

The map label for this gene is rpiR [C]

Identifier: 238895148

GI number: 238895148

Start: 3028478

End: 3029380

Strand: Reverse

Name: rpiR [C]

Synonym: KP1_3190

Alternate gene names: 238895148

Gene position: 3029380-3028478 (Counterclockwise)

Preceding gene: 238895149

Following gene: 238895147

Centisome position: 57.72

GC content: 63.12

Gene sequence:

>903_bases
ATGAAAAGCGCGGTAAAAAAAGAGAAGGGCAAAGTCGATCTGTTCGGCGAACGCTATCGCGCCCGGGCGCACCAGCTCTC
CCCCCGGCTGCGGGCGGTGGTCAGCTATATCAACGACAACCGCGAGGTGGTGCTGGAGCATACGGCGATGGAGATCGCCA
CCGCGACCCAGACCTCCGACGCCACGGTGGTGCGTGCCATCCAGGCGCTGGGCTTCGCCGGGCTGCGCGAGCTTAAGCAG
ACCATGGAGCGCTGGTTCGGCACCTCGGTCACCTCGGCGGAAAAGATGCGCTCGACGGTTACCGCGCTCTCCAGCGACGT
CAACTCCAGTATTGATTTTGTGCTTGAAGGCCATCAGCGGGTGTGCGAGGTCCTGTCGCGGGCCGACAACCGCGCGGCGG
TGGCTCAGGCGGTGGCATTGCTCAGCGACGCGCGCCAGGTGGGGATCTTCGGTATCGGCGCCTCGGGGATCCTCGCCGAA
TACACCGCCCGGTTGTTCAGCCGTATTGGCCTGCCGGCGTACGTGATGAACCGCACGGGCTTTAGCCTTGCCGAACAGCT
TATCGGCCTGCAGCGCGGCGATGTGCTGATCATGATGGGGCAAAAATCCCCTCATCGCGAAGGGTTGACCACCCTGCGCG
AGGCGAAGCGGCTGGGTATTCCGACCATCCTGCTGACCCAGGCGGTGGACTCGCGCTTCAGCCAGGAGGCGCAGGTGGTG
ATCGACGTCCCGCGCGGCGGGGACAGTAGCCGGATGCCGCTGCACGGTACGGTGCTGGTCTGTCTCGAGATGATTGTCCT
GTCGGTGGCCTCTACCACACCACAAAAAACGGTGAAATCCCTGAAACGAATCAACGATCTGCATCGGGCTATCGGTAAAT
CCGGCGGTAAACGGGGCCATTGA

Upstream 100 bases:

>100_bases
CGCGGGAAGAGGTGATCTCCAACTCCTACGCCGCGCTGTCTCTGATGGTGGCCCAGGTGCAGTCGCATATTGCCGGCAGG
CCGATCCCGGCGGAGGCCAA

Downstream 100 bases:

>100_bases
GAAGATAATTCACCAGCGGGAAGGTTTCCGGTTGCATATAAAAGTGAGTGTGTGTATTTTTATGCAAAATAAATGCATAA
AAAGGAAATCTCATGGTCAA

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MKSAVKKEKGKVDLFGERYRARAHQLSPRLRAVVSYINDNREVVLEHTAMEIATATQTSDATVVRAIQALGFAGLRELKQ
TMERWFGTSVTSAEKMRSTVTALSSDVNSSIDFVLEGHQRVCEVLSRADNRAAVAQAVALLSDARQVGIFGIGASGILAE
YTARLFSRIGLPAYVMNRTGFSLAEQLIGLQRGDVLIMMGQKSPHREGLTTLREAKRLGIPTILLTQAVDSRFSQEAQVV
IDVPRGGDSSRMPLHGTVLVCLEMIVLSVASTTPQKTVKSLKRINDLHRAIGKSGGKRGH

Sequences:

>Translated_300_residues
MKSAVKKEKGKVDLFGERYRARAHQLSPRLRAVVSYINDNREVVLEHTAMEIATATQTSDATVVRAIQALGFAGLRELKQ
TMERWFGTSVTSAEKMRSTVTALSSDVNSSIDFVLEGHQRVCEVLSRADNRAAVAQAVALLSDARQVGIFGIGASGILAE
YTARLFSRIGLPAYVMNRTGFSLAEQLIGLQRGDVLIMMGQKSPHREGLTTLREAKRLGIPTILLTQAVDSRFSQEAQVV
IDVPRGGDSSRMPLHGTVLVCLEMIVLSVASTTPQKTVKSLKRINDLHRAIGKSGGKRGH
>Mature_300_residues
MKSAVKKEKGKVDLFGERYRARAHQLSPRLRAVVSYINDNREVVLEHTAMEIATATQTSDATVVRAIQALGFAGLRELKQ
TMERWFGTSVTSAEKMRSTVTALSSDVNSSIDFVLEGHQRVCEVLSRADNRAAVAQAVALLSDARQVGIFGIGASGILAE
YTARLFSRIGLPAYVMNRTGFSLAEQLIGLQRGDVLIMMGQKSPHREGLTTLREAKRLGIPTILLTQAVDSRFSQEAQVV
IDVPRGGDSSRMPLHGTVLVCLEMIVLSVASTTPQKTVKSLKRINDLHRAIGKSGGKRGH

Specific function: Regulatory Protein Involved In Rpib Gene Repression. Also Involved In Als Operon Repression. [C]

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 32680; Mature: 32680

Theoretical pI: Translated: 10.72; Mature: 10.72

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSAVKKEKGKVDLFGERYRARAHQLSPRLRAVVSYINDNREVVLEHTAMEIATATQTSD
CCCCHHHHCCCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCCCH
ATVVRAIQALGFAGLRELKQTMERWFGTSVTSAEKMRSTVTALSSDVNSSIDFVLEGHQR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
VCEVLSRADNRAAVAQAVALLSDARQVGIFGIGASGILAEYTARLFSRIGLPAYVMNRTG
HHHHHHCCCCHHHHHHHHHHHHHHHHHCEEEECHHHHHHHHHHHHHHHCCCCHHHHCCCC
FSLAEQLIGLQRGDVLIMMGQKSPHREGLTTLREAKRLGIPTILLTQAVDSRFSQEAQVV
HHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEE
IDVPRGGDSSRMPLHGTVLVCLEMIVLSVASTTPQKTVKSLKRINDLHRAIGKSGGKRGH
EECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKSAVKKEKGKVDLFGERYRARAHQLSPRLRAVVSYINDNREVVLEHTAMEIATATQTSD
CCCCHHHHCCCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCCCH
ATVVRAIQALGFAGLRELKQTMERWFGTSVTSAEKMRSTVTALSSDVNSSIDFVLEGHQR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
VCEVLSRADNRAAVAQAVALLSDARQVGIFGIGASGILAEYTARLFSRIGLPAYVMNRTG
HHHHHHCCCCHHHHHHHHHHHHHHHHHCEEEECHHHHHHHHHHHHHHHCCCCHHHHCCCC
FSLAEQLIGLQRGDVLIMMGQKSPHREGLTTLREAKRLGIPTILLTQAVDSRFSQEAQVV
HHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEE
IDVPRGGDSSRMPLHGTVLVCLEMIVLSVASTTPQKTVKSLKRINDLHRAIGKSGGKRGH
EECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]