| Definition | Klebsiella pneumoniae NTUH-K2044 chromosome, complete genome. |
|---|---|
| Accession | NC_012731 |
| Length | 5,248,520 |
Click here to switch to the map view.
The map label for this gene is cas3 [H]
Identifier: 238895131
GI number: 238895131
Start: 3008329
End: 3010944
Strand: Reverse
Name: cas3 [H]
Synonym: KP1_3171
Alternate gene names: 238895131
Gene position: 3010944-3008329 (Counterclockwise)
Preceding gene: 238895132
Following gene: 238895130
Centisome position: 57.37
GC content: 54.63
Gene sequence:
>2616_bases ATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAAC CCGGATGTTGAGTGATGGTCGCGTGGTGCAGGGACGCTCGGTATTGAGCCATTGTCAGATTGTCGGGGAGATTGCTCGGG CGCTTATAGCGTTGTATCCCGAACCGATGCGAAGTCGACTCTTTCCAGCGGGAAGTGAAATGGCAGCGGCTGGCCACGAT ATCGGAAAGGTCAGTCCGACTTTTGCCGCCAAAATTTTTGCGGCATGTGACGTTAATGATCACCGTCTTGCTGGGTTATC GGCGGTGAACCCCGGACTCGAAACACTCTGGGGAGGACATGCAGGCGTCAGTCAGGCGACAGCGGAAAGTTTACATGCTC CGCGCTATGTTCCTGAGATCCTCGGTCAGCATCATGGTTTTAATCCAGGGCTCAACGGCAGGCGTGGCGACGCTGAAGTA TTCGGCGGGCCGCTCTGGTTTGATGAGCGTAAAAAACTCGTGGATAAGCTGAAAGCGGAATTCTCCGCAGATTGGCCGAC ATTTGATTCAGCCGCTCAGGCTCGCGTGGTCGCCGGGTTGACCTCGGTAGCTGACTGGATTGGATCCGGTGAGTTTTTTG AAAATCCTGAGCAAGCGTGGCAGCCTGTCATAACCGCAGCCCTTAATAACGCCGGCTTTATTAAACCCGTTATCCGTCAG GGACTATCCTTTGCGGACGTCTTTTTTCCTGACGATCCACCGAAGAAACCACGCGAAGCGCAATCGCGCTTTATTGACCA GGTTGTGGGGCCTGGTCTCTATATTCTCGAAGCGCAAATGGGAATGGGGAAAACCGAAGCCGCGTTATACGCGGCTTATC AAATGTTGGTCCAGGAAAAAGCAACCGGCATTTATTTTGCGCTACCCACCCAGCTAACCTCGAACAAAATATACGATCGC TTTAATGCGTTTTTGCATCAGATTGTCAGTACTGAAACCCCGCAACATGCCTTACTTTTGCATTCCGGCGCCTGGTTGAT GGATACCGAGATGGGGGAGGAAGGAAGCCCTGGTGGTGCGTGGTTTAACCACCGTAAACGCGGCTTATTAGCGCCGTTTG CCGTCGGTACCATCGATCAGGCGTTGATGGCGGTGATGAATGTTAAGCATGGTTTTGTCAGAGCGTATGGGCTCGCAGGC AAGGTTGTGATCCTTGATGAAGTTCATACTTACGATTTATACACTGGCACGATTCTTAATGCGTTAGTCGAATTCCTCCG TCAAATCGACTGTACAGTGATTATTCTTAGCGCCACGCTGAGTCAGACGCGTCGCGACGCATTACTGCAGCAAAGCACAA CCAGTGAGGCATACCCGCTGATTACCGCGGCGCCATCAGCGGAACGGGAGCGCGGTCTGGTCGAGATTGGCGTTCCCGTC ACCGAGAATACCACCGTCATCCTCCATTCTTGTCGTAAAGATGAGTCCGCGCGGGAAGAGGCGCTGCGGCGCGCAGAGCT CGGGCAGCAGGTTTTATGGATTGAGAACACCATTGCCGAAGCGCAACAAACATATCTGGACTTGGCCAGCCGGGCGGTCG AGGCGGGATGTGAAACAGGACTCTTACATTCCCGTTTTACGCCCCAGCACCGCAACCGGCATGAGCAACGCTGGGTCGCG CTTTACGGCCGGGCGGGTTGGCCCCAACGTAAACAGTGCGGACGCATTTTAGTCGGGACCCAGGTTCTGGAACAATCCCT CGATATAGATGCTGATTTCCTCGTCAGCCGTTTTGCGCCAACCGATATGTTGCTGCAACGTCTTGGTCGGCTGTGGCGAC ATACCGATACGCCCCGCCATGCCAGCGCGAAGGCGGAATGCTGGCTATTGTCCCCCTCGCTGGAGAGTGCTTTAGCCAAC CCGGGTTCTGCATTCGGCATGAGCGCGATGGTCTATTCGCCCTATGTGTTATGCCGCAGTCTGGAGGTCTGGCAAGCGAT CCCGTCCCTCTCATTGCCAGGGGATATTCGCCCCCTGATCGATCAAACCTATACCGAGCGCGCTGAAGAGGGGACATGGG CCACCCTATTGCATGAGCTGAAGAATGGCAGCCGCTTTCGTTCAGGAGAACAGGCGCTGCAGTCGCTGGCGAAGCTCACG TTATCTACCGGCGGGAAAACGCTGCCTGAGCATAAAGCGGAGACTCGCTATAGCGATCGTGACACCCATGACCTGTTGCT GCTGCGTGGTCTGCGTACGCAAGACGGCATCACGTATATGCGCCTGCTAGATGGTGCTGAATTAACCCTTCCGCATGGGC GCCATCGTTTAAGCCGGGCGCAGTGGCGACAGCTGGCGGTGGTGCTTAATCAGCAGCTGGTGCGAGTTAGCCCGGCTTTT TGTCCGCCCACAATAGCTAAAAGTGAGCTGGAAAAATTACACCTGCAGGAGGTGTTCTATCTTGGTCGCCCCGAAGATGA CGAGGCGTTACTGCGGGTTGCGATTGTCAGCCCGGCGGGTGAGTTGAAGACACTGGATGGCCGGCCCGCAGGCGATAAAT ACACTCTCGAATATAGTGAATATCTTGGCTTCCGGGCCATTTCCAAAAAGGAATAA
Upstream 100 bases:
>100_bases TCAGTGTGTTGTGGACATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACAT GTTTTTTAAGGAAAAATTCC
Downstream 100 bases:
>100_bases ACCATGGAGAACCGCTTCAATTTGATTGATGAACCCTGGATTGCGGTCGTGGATGTGGGGTTGGTCAGTTTAACCGATAT TTTCAGCCAGCCGGAATTAC
Product: CRISPR-associated Cas3 family helicase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 871; Mature: 871
Protein sequence:
>871_residues MRRLIRVSLQNQHAIAAISFENCPAKTRMLSDGRVVQGRSVLSHCQIVGEIARALIALYPEPMRSRLFPAGSEMAAAGHD IGKVSPTFAAKIFAACDVNDHRLAGLSAVNPGLETLWGGHAGVSQATAESLHAPRYVPEILGQHHGFNPGLNGRRGDAEV FGGPLWFDERKKLVDKLKAEFSADWPTFDSAAQARVVAGLTSVADWIGSGEFFENPEQAWQPVITAALNNAGFIKPVIRQ GLSFADVFFPDDPPKKPREAQSRFIDQVVGPGLYILEAQMGMGKTEAALYAAYQMLVQEKATGIYFALPTQLTSNKIYDR FNAFLHQIVSTETPQHALLLHSGAWLMDTEMGEEGSPGGAWFNHRKRGLLAPFAVGTIDQALMAVMNVKHGFVRAYGLAG KVVILDEVHTYDLYTGTILNALVEFLRQIDCTVIILSATLSQTRRDALLQQSTTSEAYPLITAAPSAERERGLVEIGVPV TENTTVILHSCRKDESAREEALRRAELGQQVLWIENTIAEAQQTYLDLASRAVEAGCETGLLHSRFTPQHRNRHEQRWVA LYGRAGWPQRKQCGRILVGTQVLEQSLDIDADFLVSRFAPTDMLLQRLGRLWRHTDTPRHASAKAECWLLSPSLESALAN PGSAFGMSAMVYSPYVLCRSLEVWQAIPSLSLPGDIRPLIDQTYTERAEEGTWATLLHELKNGSRFRSGEQALQSLAKLT LSTGGKTLPEHKAETRYSDRDTHDLLLLRGLRTQDGITYMRLLDGAELTLPHGRHRLSRAQWRQLAVVLNQQLVRVSPAF CPPTIAKSELEKLHLQEVFYLGRPEDDEALLRVAIVSPAGELKTLDGRPAGDKYTLEYSEYLGFRAISKKE
Sequences:
>Translated_871_residues MRRLIRVSLQNQHAIAAISFENCPAKTRMLSDGRVVQGRSVLSHCQIVGEIARALIALYPEPMRSRLFPAGSEMAAAGHD IGKVSPTFAAKIFAACDVNDHRLAGLSAVNPGLETLWGGHAGVSQATAESLHAPRYVPEILGQHHGFNPGLNGRRGDAEV FGGPLWFDERKKLVDKLKAEFSADWPTFDSAAQARVVAGLTSVADWIGSGEFFENPEQAWQPVITAALNNAGFIKPVIRQ GLSFADVFFPDDPPKKPREAQSRFIDQVVGPGLYILEAQMGMGKTEAALYAAYQMLVQEKATGIYFALPTQLTSNKIYDR FNAFLHQIVSTETPQHALLLHSGAWLMDTEMGEEGSPGGAWFNHRKRGLLAPFAVGTIDQALMAVMNVKHGFVRAYGLAG KVVILDEVHTYDLYTGTILNALVEFLRQIDCTVIILSATLSQTRRDALLQQSTTSEAYPLITAAPSAERERGLVEIGVPV TENTTVILHSCRKDESAREEALRRAELGQQVLWIENTIAEAQQTYLDLASRAVEAGCETGLLHSRFTPQHRNRHEQRWVA LYGRAGWPQRKQCGRILVGTQVLEQSLDIDADFLVSRFAPTDMLLQRLGRLWRHTDTPRHASAKAECWLLSPSLESALAN PGSAFGMSAMVYSPYVLCRSLEVWQAIPSLSLPGDIRPLIDQTYTERAEEGTWATLLHELKNGSRFRSGEQALQSLAKLT LSTGGKTLPEHKAETRYSDRDTHDLLLLRGLRTQDGITYMRLLDGAELTLPHGRHRLSRAQWRQLAVVLNQQLVRVSPAF CPPTIAKSELEKLHLQEVFYLGRPEDDEALLRVAIVSPAGELKTLDGRPAGDKYTLEYSEYLGFRAISKKE >Mature_871_residues MRRLIRVSLQNQHAIAAISFENCPAKTRMLSDGRVVQGRSVLSHCQIVGEIARALIALYPEPMRSRLFPAGSEMAAAGHD IGKVSPTFAAKIFAACDVNDHRLAGLSAVNPGLETLWGGHAGVSQATAESLHAPRYVPEILGQHHGFNPGLNGRRGDAEV FGGPLWFDERKKLVDKLKAEFSADWPTFDSAAQARVVAGLTSVADWIGSGEFFENPEQAWQPVITAALNNAGFIKPVIRQ GLSFADVFFPDDPPKKPREAQSRFIDQVVGPGLYILEAQMGMGKTEAALYAAYQMLVQEKATGIYFALPTQLTSNKIYDR FNAFLHQIVSTETPQHALLLHSGAWLMDTEMGEEGSPGGAWFNHRKRGLLAPFAVGTIDQALMAVMNVKHGFVRAYGLAG KVVILDEVHTYDLYTGTILNALVEFLRQIDCTVIILSATLSQTRRDALLQQSTTSEAYPLITAAPSAERERGLVEIGVPV TENTTVILHSCRKDESAREEALRRAELGQQVLWIENTIAEAQQTYLDLASRAVEAGCETGLLHSRFTPQHRNRHEQRWVA LYGRAGWPQRKQCGRILVGTQVLEQSLDIDADFLVSRFAPTDMLLQRLGRLWRHTDTPRHASAKAECWLLSPSLESALAN PGSAFGMSAMVYSPYVLCRSLEVWQAIPSLSLPGDIRPLIDQTYTERAEEGTWATLLHELKNGSRFRSGEQALQSLAKLT LSTGGKTLPEHKAETRYSDRDTHDLLLLRGLRTQDGITYMRLLDGAELTLPHGRHRLSRAQWRQLAVVLNQQLVRVSPAF CPPTIAKSELEKLHLQEVFYLGRPEDDEALLRVAIVSPAGELKTLDGRPAGDKYTLEYSEYLGFRAISKKE
Specific function: Unknown
COG id: COG1203
COG function: function code R; Predicted helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1789119, Length=561, Percent_Identity=30.1247771836007, Blast_Score=186, Evalue=6e-48,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006483 - InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR001650 - InterPro: IPR006474 - InterPro: IPR014021 [H]
Pfam domain/function: PF00270 DEAD [H]
EC number: NA
Molecular weight: Translated: 96385; Mature: 96385
Theoretical pI: Translated: 7.09; Mature: 7.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRLIRVSLQNQHAIAAISFENCPAKTRMLSDGRVVQGRSVLSHCQIVGEIARALIALYP CCCEEEEEECCCCEEEEEEECCCCCHHEECCCCCEECHHHHHHHHHHHHHHHHHHHHHCC EPMRSRLFPAGSEMAAAGHDIGKVSPTFAAKIFAACDVNDHRLAGLSAVNPGLETLWGGH CHHHHHCCCCCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHCCCCHHHHCCCC AGVSQATAESLHAPRYVPEILGQHHGFNPGLNGRRGDAEVFGGPLWFDERKKLVDKLKAE CCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHH FSADWPTFDSAAQARVVAGLTSVADWIGSGEFFENPEQAWQPVITAALNNAGFIKPVIRQ HCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHC GLSFADVFFPDDPPKKPREAQSRFIDQVVGPGLYILEAQMGMGKTEAALYAAYQMLVQEK CCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH ATGIYFALPTQLTSNKIYDRFNAFLHQIVSTETPQHALLLHSGAWLMDTEMGEEGSPGGA CCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCCCCCCCC WFNHRKRGLLAPFAVGTIDQALMAVMNVKHGFVRAYGLAGKVVILDEVHTYDLYTGTILN HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEHHHHHHHHH ALVEFLRQIDCTVIILSATLSQTRRDALLQQSTTSEAYPLITAAPSAERERGLVEIGVPV HHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHCCEEEECCCC TENTTVILHSCRKDESAREEALRRAELGQQVLWIENTIAEAQQTYLDLASRAVEAGCETG CCCCEEEEEECCCCHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCC LLHSRFTPQHRNRHEQRWVALYGRAGWPQRKQCGRILVGTQVLEQSLDIDADFLVSRFAP CHHCCCCCHHHCHHHHHEEEEECCCCCCCHHHHCCCHHHHHHHHHHCCCCHHHHHHHCCC TDMLLQRLGRLWRHTDTPRHASAKAECWLLSPSLESALANPGSAFGMSAMVYSPYVLCRS HHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHCCCCCHHCCHHHHHHHHHHHHH LEVWQAIPSLSLPGDIRPLIDQTYTERAEEGTWATLLHELKNGSRFRSGEQALQSLAKLT HHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHH LSTGGKTLPEHKAETRYSDRDTHDLLLLRGLRTQDGITYMRLLDGAELTLPHGRHRLSRA HHCCCCCCCCCHHHCCCCCCCHHHHHHHHCCCCCCCCEEEHHHCCCCEECCCCHHHHHHH QWRQLAVVLNQQLVRVSPAFCPPTIAKSELEKLHLQEVFYLGRPEDDEALLRVAIVSPAG HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEEEECCCC ELKTLDGRPAGDKYTLEYSEYLGFRAISKKE CCEECCCCCCCCCEEEEHHHHCCCCCCCCCC >Mature Secondary Structure MRRLIRVSLQNQHAIAAISFENCPAKTRMLSDGRVVQGRSVLSHCQIVGEIARALIALYP CCCEEEEEECCCCEEEEEEECCCCCHHEECCCCCEECHHHHHHHHHHHHHHHHHHHHHCC EPMRSRLFPAGSEMAAAGHDIGKVSPTFAAKIFAACDVNDHRLAGLSAVNPGLETLWGGH CHHHHHCCCCCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHCCCCHHHHCCCC AGVSQATAESLHAPRYVPEILGQHHGFNPGLNGRRGDAEVFGGPLWFDERKKLVDKLKAE CCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHH FSADWPTFDSAAQARVVAGLTSVADWIGSGEFFENPEQAWQPVITAALNNAGFIKPVIRQ HCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHC GLSFADVFFPDDPPKKPREAQSRFIDQVVGPGLYILEAQMGMGKTEAALYAAYQMLVQEK CCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH ATGIYFALPTQLTSNKIYDRFNAFLHQIVSTETPQHALLLHSGAWLMDTEMGEEGSPGGA CCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCCCCCCCC WFNHRKRGLLAPFAVGTIDQALMAVMNVKHGFVRAYGLAGKVVILDEVHTYDLYTGTILN HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEHHHHHHHHH ALVEFLRQIDCTVIILSATLSQTRRDALLQQSTTSEAYPLITAAPSAERERGLVEIGVPV HHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHCCEEEECCCC TENTTVILHSCRKDESAREEALRRAELGQQVLWIENTIAEAQQTYLDLASRAVEAGCETG CCCCEEEEEECCCCHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCC LLHSRFTPQHRNRHEQRWVALYGRAGWPQRKQCGRILVGTQVLEQSLDIDADFLVSRFAP CHHCCCCCHHHCHHHHHEEEEECCCCCCCHHHHCCCHHHHHHHHHHCCCCHHHHHHHCCC TDMLLQRLGRLWRHTDTPRHASAKAECWLLSPSLESALANPGSAFGMSAMVYSPYVLCRS HHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHCCCCCHHCCHHHHHHHHHHHHH LEVWQAIPSLSLPGDIRPLIDQTYTERAEEGTWATLLHELKNGSRFRSGEQALQSLAKLT HHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHH LSTGGKTLPEHKAETRYSDRDTHDLLLLRGLRTQDGITYMRLLDGAELTLPHGRHRLSRA HHCCCCCCCCCHHHCCCCCCCHHHHHHHHCCCCCCCCEEEHHHCCCCEECCCCHHHHHHH QWRQLAVVLNQQLVRVSPAFCPPTIAKSELEKLHLQEVFYLGRPEDDEALLRVAIVSPAG HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEEEECCCC ELKTLDGRPAGDKYTLEYSEYLGFRAISKKE CCEECCCCCCCCCEEEEHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503; 2005873; 7984428 [H]