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The map label for this gene is ccmF [H]

Identifier: 238895112

GI number: 238895112

Start: 2989591

End: 2991543

Strand: Reverse

Name: ccmF [H]

Synonym: KP1_3151

Alternate gene names: 238895112

Gene position: 2991543-2989591 (Counterclockwise)

Preceding gene: 238895113

Following gene: 238895111

Centisome position: 57.0

GC content: 64.87

Gene sequence:

>1953_bases
ATGATGCCGGAACTGGGCAACTTTTTATTGTGTCTGGCGGCGGGGCTGGCGCTGCTCCTGAGCGTCTATCCCCTGTGGGG
CGCGGCGCGGCAGGATCGGCGGCTGATGGCCCTGGCACGGCCGCTGGCCTGGGGGCTATTCGCCTGTATCGGCGGCGCCT
TCCTGCTGCTGGTGCACGCCTTTGTGGTCAATGACTTTACCGTCCGCTATGTGGCGGAAAACTCCAACAGCGCGCTGCCG
GTGTGGTATCGGGTAGCGGCGACCTGGGGGGCGCACGAGGGCTCGCTGCTGCTGTGGGTTCTGCTGCTCAGCGTCTGGAC
CTTCGCCGTCGCCATCTTCAGCCGCCGGATGCCGCTCGACGCCGTCGCCCGGGTGCTGGCGGTGATGGGGATGATCGCCT
TTGGTTTCCTGCTGTTTATCCTCTTCACCTCCAATCCGTTCAGCCGCGGCCTGCCGCAGTACCCCATTGATGGTCGCGAC
CTCAATCCGCTGCTGCAGGATATCGGCATGATTTTCCATCCGCCGATCCTCTATATGGGTTACGTCGGCTTCTCGGTGGC
TTTCGCCTTCGCCATCGCCTCGCTGCTGGCGGGCCGGCTGGATACTGCCTGGGCGCGCTGGTCGCGTCCCTGGACCCAGG
CGGCATGGATGTTCCTCACCCTCGGCATCGTGCTGGGCTCGGCGTGGGCATACTACGAACTGGGCTGGGGCGGCTGGTGG
TTCTGGGACCCGGTGGAAAACGCCTCGTTTATGCCGTGGCTGGTGGGAACCGCGCTGCTGCACTCCCTGGCGGTGACCGA
AAAGCGGGGCAGCTTCCGCGCCTGGACGGTGCTGCTGGCCATCGCCGCCTTCTCCCTGTGCCTGCTGGGCACCTTCCTGG
TGCGCTCCGGGGTGCTGGTTTCGGTGCATGCCTTCGCCTCGGATCCGTCGCGCGGGCTGTTTATTCTGGTACTGCTGATT
GTCGCCATCGGCGGATCGCTGCTGCTGTACGCCCTGAAGGGCGGCCGGGTGCGGGCGCGGGTGGAACATACGCTTTGGTC
GCGCGAGACGTTCCTGCTTGGCAACAATATCTTGCTGATGGCCGCGATGCTGGTGGTGCTCCTCGGGACGCTGCTGCCGC
TGGTGCATAAAGAGCTGGGCCTCGGCAGCATCTCCATCGGCGAGCCGTTCTTTAACACCATGTTCACCGCCCTGATGGCG
CCGTTTGCGCTGCTGCTGGGGCTGGGGCCGCTGATCCGCTGGCGGCGCGATGACGTCGCCAGGCAGATTAAGCGCCTGAT
TATCGCTCTGCTGGTGACGTTGTCACTTTCTCTGGCGCTGCCGTGGCTGCTGCAGGACCGTATCACCGCCATGGCGGTCA
TAGGCCTGATGATGGCCCTGTGGGTGCTGATCTTCGCCCTGATGGAGGTTCACGAACGGGCCACCCATCGCCACGGCTTC
TGGCGCGGCCTGCGCACGCTGACCCGCAGCCAGTGGGGGATGGTGCTCGGCCACGTTGGCGTGGCGGTGACCGTTATCGG
CATCACCTTCAGCCAGAACTACAGCGTGGAGCGCGATGTACGGATGCGCCCCGGCGACAGCATCGATATCCACCGCTATC
ACTTTGTGTTTAACGGCGTGCGCAATATCGTCGGCCCCAACTGGACCGGCGGCGAAGGCATTATCGCCGTGACCCGCAAC
GGCCGCCCGGAAGCGACGCTGTATGCCGAGAAACGCTTTTACACCGCCAGCCGGATGATGATGACCGAGGCGGCGATCAG
CGGCGGGCTGACCCGCGATCTGTACGCCGCGCTGGGGGAAGAGCTGAGCGACGGCAGCTGGGCGGTGCGTCTGTACTATA
AACCGTTCGTTCGCTGGATCTGGTACGGCGGGGTGCTGATGGCCCTCGGCGGTCTGTGCTGCATGCTCGATCCGCGCTAC
CGGATGCGTAAGAAGCTGCAGGAGGCCTCATGA

Upstream 100 bases:

>100_bases
GGCATATTACCGCCCAGCAGGTGCTGGCCAAACATGATGAAAATTACACGCCGCCGGAGGTGAAAAACGCCATGACGCCG
GAGAAAACGGGGGCGCAGCC

Downstream 100 bases:

>100_bases
ACCGGAAGCTACTGTTTATCCCGCTGGTGCTGTTTCTGGCGCTGGCCGCCGCGCTGTTCTGGCAACTGATGCGCAACGCC
GAGGGCGATGACCCGACGAC

Product: cytochrome c-type biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 650; Mature: 650

Protein sequence:

>650_residues
MMPELGNFLLCLAAGLALLLSVYPLWGAARQDRRLMALARPLAWGLFACIGGAFLLLVHAFVVNDFTVRYVAENSNSALP
VWYRVAATWGAHEGSLLLWVLLLSVWTFAVAIFSRRMPLDAVARVLAVMGMIAFGFLLFILFTSNPFSRGLPQYPIDGRD
LNPLLQDIGMIFHPPILYMGYVGFSVAFAFAIASLLAGRLDTAWARWSRPWTQAAWMFLTLGIVLGSAWAYYELGWGGWW
FWDPVENASFMPWLVGTALLHSLAVTEKRGSFRAWTVLLAIAAFSLCLLGTFLVRSGVLVSVHAFASDPSRGLFILVLLI
VAIGGSLLLYALKGGRVRARVEHTLWSRETFLLGNNILLMAAMLVVLLGTLLPLVHKELGLGSISIGEPFFNTMFTALMA
PFALLLGLGPLIRWRRDDVARQIKRLIIALLVTLSLSLALPWLLQDRITAMAVIGLMMALWVLIFALMEVHERATHRHGF
WRGLRTLTRSQWGMVLGHVGVAVTVIGITFSQNYSVERDVRMRPGDSIDIHRYHFVFNGVRNIVGPNWTGGEGIIAVTRN
GRPEATLYAEKRFYTASRMMMTEAAISGGLTRDLYAALGEELSDGSWAVRLYYKPFVRWIWYGGVLMALGGLCCMLDPRY
RMRKKLQEAS

Sequences:

>Translated_650_residues
MMPELGNFLLCLAAGLALLLSVYPLWGAARQDRRLMALARPLAWGLFACIGGAFLLLVHAFVVNDFTVRYVAENSNSALP
VWYRVAATWGAHEGSLLLWVLLLSVWTFAVAIFSRRMPLDAVARVLAVMGMIAFGFLLFILFTSNPFSRGLPQYPIDGRD
LNPLLQDIGMIFHPPILYMGYVGFSVAFAFAIASLLAGRLDTAWARWSRPWTQAAWMFLTLGIVLGSAWAYYELGWGGWW
FWDPVENASFMPWLVGTALLHSLAVTEKRGSFRAWTVLLAIAAFSLCLLGTFLVRSGVLVSVHAFASDPSRGLFILVLLI
VAIGGSLLLYALKGGRVRARVEHTLWSRETFLLGNNILLMAAMLVVLLGTLLPLVHKELGLGSISIGEPFFNTMFTALMA
PFALLLGLGPLIRWRRDDVARQIKRLIIALLVTLSLSLALPWLLQDRITAMAVIGLMMALWVLIFALMEVHERATHRHGF
WRGLRTLTRSQWGMVLGHVGVAVTVIGITFSQNYSVERDVRMRPGDSIDIHRYHFVFNGVRNIVGPNWTGGEGIIAVTRN
GRPEATLYAEKRFYTASRMMMTEAAISGGLTRDLYAALGEELSDGSWAVRLYYKPFVRWIWYGGVLMALGGLCCMLDPRY
RMRKKLQEAS
>Mature_650_residues
MMPELGNFLLCLAAGLALLLSVYPLWGAARQDRRLMALARPLAWGLFACIGGAFLLLVHAFVVNDFTVRYVAENSNSALP
VWYRVAATWGAHEGSLLLWVLLLSVWTFAVAIFSRRMPLDAVARVLAVMGMIAFGFLLFILFTSNPFSRGLPQYPIDGRD
LNPLLQDIGMIFHPPILYMGYVGFSVAFAFAIASLLAGRLDTAWARWSRPWTQAAWMFLTLGIVLGSAWAYYELGWGGWW
FWDPVENASFMPWLVGTALLHSLAVTEKRGSFRAWTVLLAIAAFSLCLLGTFLVRSGVLVSVHAFASDPSRGLFILVLLI
VAIGGSLLLYALKGGRVRARVEHTLWSRETFLLGNNILLMAAMLVVLLGTLLPLVHKELGLGSISIGEPFFNTMFTALMA
PFALLLGLGPLIRWRRDDVARQIKRLIIALLVTLSLSLALPWLLQDRITAMAVIGLMMALWVLIFALMEVHERATHRHGF
WRGLRTLTRSQWGMVLGHVGVAVTVIGITFSQNYSVERDVRMRPGDSIDIHRYHFVFNGVRNIVGPNWTGGEGIIAVTRN
GRPEATLYAEKRFYTASRMMMTEAAISGGLTRDLYAALGEELSDGSWAVRLYYKPFVRWIWYGGVLMALGGLCCMLDPRY
RMRKKLQEAS

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=650, Percent_Identity=72.6153846153846, Blast_Score=923, Evalue=0.0,
Organism=Escherichia coli, GI1790511, Length=351, Percent_Identity=49.002849002849, Blast_Score=268, Evalue=6e-73,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 72454; Mature: 72454

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMPELGNFLLCLAAGLALLLSVYPLWGAARQDRRLMALARPLAWGLFACIGGAFLLLVHA
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVVNDFTVRYVAENSNSALPVWYRVAATWGAHEGSLLLWVLLLSVWTFAVAIFSRRMPLD
HHHCCCEEEEEEECCCCCCHHHHEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHH
AVARVLAVMGMIAFGFLLFILFTSNPFSRGLPQYPIDGRDLNPLLQDIGMIFHPPILYMG
HHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHH
YVGFSVAFAFAIASLLAGRLDTAWARWSRPWTQAAWMFLTLGIVLGSAWAYYELGWGGWW
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHEEEECCCCEE
FWDPVENASFMPWLVGTALLHSLAVTEKRGSFRAWTVLLAIAAFSLCLLGTFLVRSGVLV
EECCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
SVHAFASDPSRGLFILVLLIVAIGGSLLLYALKGGRVRARVEHTLWSRETFLLGNNILLM
EEEECCCCCCCHHHHHHHHHHHHCCHHEEHHHCCCCEEEHHHHHHHCCCCEEECCCHHHH
AAMLVVLLGTLLPLVHKELGLGSISIGEPFFNTMFTALMAPFALLLGLGPLIRWRRDDVA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
RQIKRLIIALLVTLSLSLALPWLLQDRITAMAVIGLMMALWVLIFALMEVHERATHRHGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WRGLRTLTRSQWGMVLGHVGVAVTVIGITFSQNYSVERDVRMRPGDSIDIHRYHFVFNGV
HHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCEECCCCCCCHHHHHHHHHHH
RNIVGPNWTGGEGIIAVTRNGRPEATLYAEKRFYTASRMMMTEAAISGGLTRDLYAALGE
HHHCCCCCCCCCCEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC
ELSDGSWAVRLYYKPFVRWIWYGGVLMALGGLCCMLDPRYRMRKKLQEAS
CCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCHHEECCCHHHHHHHHHCCC
>Mature Secondary Structure
MMPELGNFLLCLAAGLALLLSVYPLWGAARQDRRLMALARPLAWGLFACIGGAFLLLVHA
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVVNDFTVRYVAENSNSALPVWYRVAATWGAHEGSLLLWVLLLSVWTFAVAIFSRRMPLD
HHHCCCEEEEEEECCCCCCHHHHEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHH
AVARVLAVMGMIAFGFLLFILFTSNPFSRGLPQYPIDGRDLNPLLQDIGMIFHPPILYMG
HHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHH
YVGFSVAFAFAIASLLAGRLDTAWARWSRPWTQAAWMFLTLGIVLGSAWAYYELGWGGWW
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHEEEECCCCEE
FWDPVENASFMPWLVGTALLHSLAVTEKRGSFRAWTVLLAIAAFSLCLLGTFLVRSGVLV
EECCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
SVHAFASDPSRGLFILVLLIVAIGGSLLLYALKGGRVRARVEHTLWSRETFLLGNNILLM
EEEECCCCCCCHHHHHHHHHHHHCCHHEEHHHCCCCEEEHHHHHHHCCCCEEECCCHHHH
AAMLVVLLGTLLPLVHKELGLGSISIGEPFFNTMFTALMAPFALLLGLGPLIRWRRDDVA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
RQIKRLIIALLVTLSLSLALPWLLQDRITAMAVIGLMMALWVLIFALMEVHERATHRHGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WRGLRTLTRSQWGMVLGHVGVAVTVIGITFSQNYSVERDVRMRPGDSIDIHRYHFVFNGV
HHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCEECCCCCCCHHHHHHHHHHH
RNIVGPNWTGGEGIIAVTRNGRPEATLYAEKRFYTASRMMMTEAAISGGLTRDLYAALGE
HHHCCCCCCCCCCEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC
ELSDGSWAVRLYYKPFVRWIWYGGVLMALGGLCCMLDPRYRMRKKLQEAS
CCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCHHEECCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503; 7635817 [H]