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The map label for this gene is ybhD [H]

Identifier: 238895092

GI number: 238895092

Start: 2970175

End: 2971059

Strand: Reverse

Name: ybhD [H]

Synonym: KP1_3128

Alternate gene names: 238895092

Gene position: 2971059-2970175 (Counterclockwise)

Preceding gene: 238895099

Following gene: 238895089

Centisome position: 56.61

GC content: 62.71

Gene sequence:

>885_bases
ATGAGTGTCAAACAGTTACGCGCGTTTTTAGCGGTAGCTCACACTCTGAATTTCGCCCACGCCAGCGAAAGGCTGAATCT
GTCGCAGCCAGCTCTCAGCCTGACCATCAAAGGGTTGGAGGAGGCGCTGGGCGGCGCGCTGCTGCAGCGCAGCACCCGCA
AAGTGACCCTCACCCAGGAGGGGGAACTCTTTCTGCCGATGGCCCGTCAGCTGCTGGCCGACTGGGATAACGTCGAGGAG
GCCATGCGTCAGAGCTTTACCCTGCAGCGGGGTAAAATTTCGGTCGCCGCGATGCCGTCGTTTGCCGCCAACGTTCTGCC
GGAGGCGCTGAAAGCCTTCCGCGACCGCTATGCCGGGGTGAACGTTACGGTGCATGACGTGATTAATGAGCAGGTGATCG
AGATGGTGCGCGAGGGGCGGGTGGAGATGGGCATCGCTTTCGAGCCATCGCCCAACCACAACCTGCTGTTTACCCCGCTG
GCGGTGGACCGCTTCGTGGCGATCGTTCCCCAACAATCCCCACTGGCGAAGAAAAAGCAGCTCACCTGGCAGGAGCTGTT
GACCCTCGACTTTATTACCCTGCAGCGCCCCTCGGCGGTACGCCTGATGCTGGAGGAGGCGCTGGCGCGCAGCGGACGTC
AGCTGGACGTGGCGCTGGAGAGTCATCAGCTGGTAACGGTGGGGAGAATGGTGGCCAGCGGCCTGGGGGGCAGCGCGGTG
CCGGCGCTGTGTAAAACGCAGATGGCATCGTTGGGCGCCGTCTGCATCCCGCTCAGCGATCCGCCGATTGAGAAGTGCGT
CGGCGCGATCCATGCCGGACATCTGCCGCTGTCGAAGGCGGCGCAGGCGCTGCTGGATACGCTGAAAGGGTTTTTACCCA
CCTGA

Upstream 100 bases:

>100_bases
TGATTTGATAATTTTGAATTTGTGACCCACTCATTTGGAATTTTAATTAATTTCCTGTTAACTAATTTTTTTCAATTAGT
TAACAGGAAGAAAAATGAGA

Downstream 100 bases:

>100_bases
AGGTGTGGGCGTCAAAAAAAAACCGGCCTGCTGGCCGGTTTGACAATCAGATTTTGCAGGCGTCGCCGCAGTCGTCGTCG
GCAACGATCGCCTGGGCTTT

Product: putative LysR-family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 293

Protein sequence:

>294_residues
MSVKQLRAFLAVAHTLNFAHASERLNLSQPALSLTIKGLEEALGGALLQRSTRKVTLTQEGELFLPMARQLLADWDNVEE
AMRQSFTLQRGKISVAAMPSFAANVLPEALKAFRDRYAGVNVTVHDVINEQVIEMVREGRVEMGIAFEPSPNHNLLFTPL
AVDRFVAIVPQQSPLAKKKQLTWQELLTLDFITLQRPSAVRLMLEEALARSGRQLDVALESHQLVTVGRMVASGLGGSAV
PALCKTQMASLGAVCIPLSDPPIEKCVGAIHAGHLPLSKAAQALLDTLKGFLPT

Sequences:

>Translated_294_residues
MSVKQLRAFLAVAHTLNFAHASERLNLSQPALSLTIKGLEEALGGALLQRSTRKVTLTQEGELFLPMARQLLADWDNVEE
AMRQSFTLQRGKISVAAMPSFAANVLPEALKAFRDRYAGVNVTVHDVINEQVIEMVREGRVEMGIAFEPSPNHNLLFTPL
AVDRFVAIVPQQSPLAKKKQLTWQELLTLDFITLQRPSAVRLMLEEALARSGRQLDVALESHQLVTVGRMVASGLGGSAV
PALCKTQMASLGAVCIPLSDPPIEKCVGAIHAGHLPLSKAAQALLDTLKGFLPT
>Mature_293_residues
SVKQLRAFLAVAHTLNFAHASERLNLSQPALSLTIKGLEEALGGALLQRSTRKVTLTQEGELFLPMARQLLADWDNVEEA
MRQSFTLQRGKISVAAMPSFAANVLPEALKAFRDRYAGVNVTVHDVINEQVIEMVREGRVEMGIAFEPSPNHNLLFTPLA
VDRFVAIVPQQSPLAKKKQLTWQELLTLDFITLQRPSAVRLMLEEALARSGRQLDVALESHQLVTVGRMVASGLGGSAVP
ALCKTQMASLGAVCIPLSDPPIEKCVGAIHAGHLPLSKAAQALLDTLKGFLPT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=280, Percent_Identity=33.5714285714286, Blast_Score=154, Evalue=7e-39,
Organism=Escherichia coli, GI1788748, Length=291, Percent_Identity=30.5841924398625, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1788887, Length=244, Percent_Identity=29.9180327868852, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI157672245, Length=265, Percent_Identity=28.3018867924528, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1787879, Length=269, Percent_Identity=28.996282527881, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1790399, Length=291, Percent_Identity=22.680412371134, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787530, Length=264, Percent_Identity=26.1363636363636, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1789204, Length=300, Percent_Identity=24.6666666666667, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1788481, Length=289, Percent_Identity=25.2595155709343, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787601, Length=167, Percent_Identity=29.940119760479, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI2367136, Length=263, Percent_Identity=27.7566539923954, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87081904, Length=163, Percent_Identity=29.4478527607362, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788296, Length=239, Percent_Identity=25.9414225941423, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786401, Length=297, Percent_Identity=23.9057239057239, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788297, Length=246, Percent_Identity=24.390243902439, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789173, Length=130, Percent_Identity=33.8461538461538, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787589, Length=253, Percent_Identity=24.1106719367589, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31924; Mature: 31793

Theoretical pI: Translated: 8.52; Mature: 8.52

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVKQLRAFLAVAHTLNFAHASERLNLSQPALSLTIKGLEEALGGALLQRSTRKVTLTQE
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
GELFLPMARQLLADWDNVEEAMRQSFTLQRGKISVAAMPSFAANVLPEALKAFRDRYAGV
CCEEHHHHHHHHHCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHCCC
NVTVHDVINEQVIEMVREGRVEMGIAFEPSPNHNLLFTPLAVDRFVAIVPQQSPLAKKKQ
CEEHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEHHHHHHHHHCCCCCCCCHHHHH
LTWQELLTLDFITLQRPSAVRLMLEEALARSGRQLDVALESHQLVTVGRMVASGLGGSAV
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCCCHH
PALCKTQMASLGAVCIPLSDPPIEKCVGAIHAGHLPLSKAAQALLDTLKGFLPT
HHHHHHHHHHCCEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SVKQLRAFLAVAHTLNFAHASERLNLSQPALSLTIKGLEEALGGALLQRSTRKVTLTQE
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
GELFLPMARQLLADWDNVEEAMRQSFTLQRGKISVAAMPSFAANVLPEALKAFRDRYAGV
CCEEHHHHHHHHHCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHCCC
NVTVHDVINEQVIEMVREGRVEMGIAFEPSPNHNLLFTPLAVDRFVAIVPQQSPLAKKKQ
CEEHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEHHHHHHHHHCCCCCCCCHHHHH
LTWQELLTLDFITLQRPSAVRLMLEEALARSGRQLDVALESHQLVTVGRMVASGLGGSAV
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCCCHH
PALCKTQMASLGAVCIPLSDPPIEKCVGAIHAGHLPLSKAAQALLDTLKGFLPT
HHHHHHHHHHCCEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]