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The map label for this gene is yhjC [H]

Identifier: 238895073

GI number: 238895073

Start: 2954426

End: 2955343

Strand: Direct

Name: yhjC [H]

Synonym: KP1_3105

Alternate gene names: 238895073

Gene position: 2954426-2955343 (Clockwise)

Preceding gene: 238895070

Following gene: 238895078

Centisome position: 56.29

GC content: 59.59

Gene sequence:

>918_bases
ATGGACAGCCTCACCTCGTTGACGTCCTTTGTCCGCACCGCCGAAACGCTAAGCTTTGTTCAGGCCGCCAGGCTGCTGGG
CATATCTGCCTCGGCGGTGGGTAAGAATGTCGCCCGGCTTGAGCATAAACTGGGGGTCCGGCTGTTCAACCGCAGCACCA
GAAACGTCAGCCTGACGGCGGAGGGGGCCGCATTTCTGACCCGCTGTCAGAGTATCCTGGAGCAGATCCAGGAGGCCGAG
TCAGAGCTGACCAGCAGTCTCTCACAGCCCACCGGCAAACTGAGGATTTCACTGCCCGTCATTGGCTACCGCCTGTTGCT
CCCCGCCCTCACCGCCTTTAGCCGTCTTTATCCGCAGGTTGAACTGGATCTCGACTTTAGCGACCGGCTGGTCAATCTGA
TCGATGAGGGGGTTGATGTCGCTATCCGCAGCGGTGAATTAGCGGACTCCCGCTTGATCGCCAGAACGCTGGGGGGTTTT
CGTTTTGTGCTCTGCGCCAGCCCGGCCTATCTGGCGGAATACAGCGCCCCCGGCTCACCAGCGGAATTGGCGGCACACAA
GTGCATTTTTTTCCGCTTCCCCGCGACGGGGCTGATCCAGCCCTGGGAACTGCGCGGTATGCGACTGACGGGAGATTTCA
GGGCCGCTGCCGTGATGACGGTCAATAACATTGAGGCCGCCATTCGCTTAAGCGCGGCGGGGATGGGCATCGCTTATGTG
CCTGATTTTGTCCTGCGCGAGGCAATGGATGAGGGACAACTGCAGGAGGTGTTGCCCGGGTGTTGCGTCAAGGATGGGCA
TTTCTCGGTCCTGTGGCCCGCCAGCCGCTACCTGTCACCAAGAATACGCTGTTTTATCGATTTTATAGCTGCGGCAGAGA
TACCTTTGTCACCCGCATCGGCAAGCCCTACCACCTGA

Upstream 100 bases:

>100_bases
AGTCGGCAAGAAAGAATAAACTGTCGCCATCCTATTGCGGATGTTATTGCCGATAAATAGACTGAAAATATCTTCTTAAG
AGACATAAGGTTTATAATCG

Downstream 100 bases:

>100_bases
AAAGCTCAGCGCCGGAGATCCTGCCGCCCGGCCAGCGAAAGCCGGCGGCAGGTATACCATTCAAGAGCGCATCTTACCCT
TTGGCAAAATTGGCCTGGAT

Product: putative LysR-family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MDSLTSLTSFVRTAETLSFVQAARLLGISASAVGKNVARLEHKLGVRLFNRSTRNVSLTAEGAAFLTRCQSILEQIQEAE
SELTSSLSQPTGKLRISLPVIGYRLLLPALTAFSRLYPQVELDLDFSDRLVNLIDEGVDVAIRSGELADSRLIARTLGGF
RFVLCASPAYLAEYSAPGSPAELAAHKCIFFRFPATGLIQPWELRGMRLTGDFRAAAVMTVNNIEAAIRLSAAGMGIAYV
PDFVLREAMDEGQLQEVLPGCCVKDGHFSVLWPASRYLSPRIRCFIDFIAAAEIPLSPASASPTT

Sequences:

>Translated_305_residues
MDSLTSLTSFVRTAETLSFVQAARLLGISASAVGKNVARLEHKLGVRLFNRSTRNVSLTAEGAAFLTRCQSILEQIQEAE
SELTSSLSQPTGKLRISLPVIGYRLLLPALTAFSRLYPQVELDLDFSDRLVNLIDEGVDVAIRSGELADSRLIARTLGGF
RFVLCASPAYLAEYSAPGSPAELAAHKCIFFRFPATGLIQPWELRGMRLTGDFRAAAVMTVNNIEAAIRLSAAGMGIAYV
PDFVLREAMDEGQLQEVLPGCCVKDGHFSVLWPASRYLSPRIRCFIDFIAAAEIPLSPASASPTT
>Mature_305_residues
MDSLTSLTSFVRTAETLSFVQAARLLGISASAVGKNVARLEHKLGVRLFNRSTRNVSLTAEGAAFLTRCQSILEQIQEAE
SELTSSLSQPTGKLRISLPVIGYRLLLPALTAFSRLYPQVELDLDFSDRLVNLIDEGVDVAIRSGELADSRLIARTLGGF
RFVLCASPAYLAEYSAPGSPAELAAHKCIFFRFPATGLIQPWELRGMRLTGDFRAAAVMTVNNIEAAIRLSAAGMGIAYV
PDFVLREAMDEGQLQEVLPGCCVKDGHFSVLWPASRYLSPRIRCFIDFIAAAEIPLSPASASPTT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=294, Percent_Identity=35.0340136054422, Blast_Score=184, Evalue=6e-48,
Organism=Escherichia coli, GI1786401, Length=288, Percent_Identity=37.8472222222222, Blast_Score=171, Evalue=5e-44,
Organism=Escherichia coli, GI1787128, Length=294, Percent_Identity=28.9115646258503, Blast_Score=155, Evalue=3e-39,
Organism=Escherichia coli, GI1789639, Length=263, Percent_Identity=33.8403041825095, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI87081978, Length=259, Percent_Identity=35.1351351351351, Blast_Score=128, Evalue=6e-31,
Organism=Escherichia coli, GI1787589, Length=289, Percent_Identity=29.4117647058824, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI1789440, Length=292, Percent_Identity=28.4246575342466, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1789173, Length=187, Percent_Identity=30.4812834224599, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790011, Length=257, Percent_Identity=24.5136186770428, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788706, Length=168, Percent_Identity=32.1428571428571, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787879, Length=293, Percent_Identity=27.6450511945392, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1786448, Length=144, Percent_Identity=34.0277777777778, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787601, Length=146, Percent_Identity=30.1369863013699, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788481, Length=314, Percent_Identity=25.796178343949, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI145693105, Length=258, Percent_Identity=23.2558139534884, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87082132, Length=288, Percent_Identity=28.125, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786713, Length=261, Percent_Identity=26.0536398467433, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33072; Mature: 33072

Theoretical pI: Translated: 6.76; Mature: 6.76

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSLTSLTSFVRTAETLSFVQAARLLGISASAVGKNVARLEHKLGVRLFNRSTRNVSLTA
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
EGAAFLTRCQSILEQIQEAESELTSSLSQPTGKLRISLPVIGYRLLLPALTAFSRLYPQV
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCE
ELDLDFSDRLVNLIDEGVDVAIRSGELADSRLIARTLGGFRFVLCASPAYLAEYSAPGSP
EEECCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCEEEEEECCCHHHHHCCCCCCH
AELAAHKCIFFRFPATGLIQPWELRGMRLTGDFRAAAVMTVNNIEAAIRLSAAGMGIAYV
HHHHHCEEEEEECCCCCCCCCHHCCCEEEECCCCEEEEEEEECHHEEEEEECCCCCHHHH
PDFVLREAMDEGQLQEVLPGCCVKDGHFSVLWPASRYLSPRIRCFIDFIAAAEIPLSPAS
HHHHHHHHHCCCCHHHHCCCCEECCCCEEEECCCHHHHCHHHHHHHHHHHHCCCCCCCCC
ASPTT
CCCCC
>Mature Secondary Structure
MDSLTSLTSFVRTAETLSFVQAARLLGISASAVGKNVARLEHKLGVRLFNRSTRNVSLTA
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
EGAAFLTRCQSILEQIQEAESELTSSLSQPTGKLRISLPVIGYRLLLPALTAFSRLYPQV
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCE
ELDLDFSDRLVNLIDEGVDVAIRSGELADSRLIARTLGGFRFVLCASPAYLAEYSAPGSP
EEECCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCEEEEEECCCHHHHHCCCCCCH
AELAAHKCIFFRFPATGLIQPWELRGMRLTGDFRAAAVMTVNNIEAAIRLSAAGMGIAYV
HHHHHCEEEEEECCCCCCCCCHHCCCEEEECCCCEEEEEEEECHHEEEEEECCCCCHHHH
PDFVLREAMDEGQLQEVLPGCCVKDGHFSVLWPASRYLSPRIRCFIDFIAAAEIPLSPAS
HHHHHHHHHCCCCHHHHCCCCEECCCCEEEECCCHHHHCHHHHHHHHHHHHCCCCCCCCC
ASPTT
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]