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The map label for this gene is ydcN [H]

Identifier: 238894976

GI number: 238894976

Start: 2863741

End: 2864310

Strand: Reverse

Name: ydcN [H]

Synonym: KP1_3002

Alternate gene names: 238894976

Gene position: 2864310-2863741 (Counterclockwise)

Preceding gene: 238894978

Following gene: 238894975

Centisome position: 54.57

GC content: 59.65

Gene sequence:

>570_bases
ATGAATATTGCGCAACATCTGGCGGCAACGCTTAAAACCCTGCGCCAGCAGCGAGGCTGGAGCCTGTCGCGACTGGCGGA
AGAGACCGGGGTGTCGAAAGCCATGCTCGGGCAGATTGAGCGGAATGAATCAAGTCCAACGGTGGCGACGCTGTGGAAGA
TTGCCACCGGGCTGAACGTACCGTTTTCGGCGTTCATCGTCCCGGACGCCAGCGCCGCGCCCTCCGCGTTTGATCCGCAG
CAGCAGGCGATGGTGGTGACGCCAGTATTCCCGTGGGATCCCGAGCTGCGCTTTGACCATTTTTCGATAACCCTTGCCCC
CGGCGCGCTGAGCGAATCAACGCCGCATGAGAAAGGGGTGATTGAGCATGTGGTAGTGATAAGTGGTACGCTGGATTTGT
GCTTACAAGGGGAGTGGCACTCGCTGCAGGCGGGTGAGGGTAGGCGTTTCGCCGGCGACGCGACGCATGCGTATCGTAAC
CGCGGCGCCCAGGCGGCCCATTTCCATTCTCTTATCCATTATCCAAAAGAAAAAACCGCGAGCGAACCCGCGGCCAGACA
AGATGACTGA

Upstream 100 bases:

>100_bases
GGGAGAAATACTCGCCGCCAGTGGCGTACGATGCCGTTAAACGTCCTGAAAAAATCAGACAAATGGCGGTATACTTTGCG
CAGTAAAAACAGGAGGAAGG

Downstream 100 bases:

>100_bases
TGATAACCACTCACAACGTGACGAGGAAAATCCGGAATACGTGATGACAGTACTCTTCGCCGCCATTTGAGGGAAATATC
TTTTCCGTCAATACTTTGTT

Product: putative regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MNIAQHLAATLKTLRQQRGWSLSRLAEETGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSAFIVPDASAAPSAFDPQ
QQAMVVTPVFPWDPELRFDHFSITLAPGALSESTPHEKGVIEHVVVISGTLDLCLQGEWHSLQAGEGRRFAGDATHAYRN
RGAQAAHFHSLIHYPKEKTASEPAARQDD

Sequences:

>Translated_189_residues
MNIAQHLAATLKTLRQQRGWSLSRLAEETGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSAFIVPDASAAPSAFDPQ
QQAMVVTPVFPWDPELRFDHFSITLAPGALSESTPHEKGVIEHVVVISGTLDLCLQGEWHSLQAGEGRRFAGDATHAYRN
RGAQAAHFHSLIHYPKEKTASEPAARQDD
>Mature_189_residues
MNIAQHLAATLKTLRQQRGWSLSRLAEETGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSAFIVPDASAAPSAFDPQ
QQAMVVTPVFPWDPELRFDHFSITLAPGALSESTPHEKGVIEHVVVISGTLDLCLQGEWHSLQAGEGRRFAGDATHAYRN
RGAQAAHFHSLIHYPKEKTASEPAARQDD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=175, Percent_Identity=76, Blast_Score=285, Evalue=9e-79,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 20617; Mature: 20617

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIAQHLAATLKTLRQQRGWSLSRLAEETGVSKAMLGQIERNESSPTVATLWKIATGLNV
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCC
PFSAFIVPDASAAPSAFDPQQQAMVVTPVFPWDPELRFDHFSITLAPGALSESTPHEKGV
CEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCCCCCH
IEHVVVISGTLDLCLQGEWHSLQAGEGRRFAGDATHAYRNRGAQAAHFHSLIHYPKEKTA
HHEEEEEECCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCHHCC
SEPAARQDD
CCCCCCCCC
>Mature Secondary Structure
MNIAQHLAATLKTLRQQRGWSLSRLAEETGVSKAMLGQIERNESSPTVATLWKIATGLNV
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCC
PFSAFIVPDASAAPSAFDPQQQAMVVTPVFPWDPELRFDHFSITLAPGALSESTPHEKGV
CEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCCCCCH
IEHVVVISGTLDLCLQGEWHSLQAGEGRRFAGDATHAYRNRGAQAAHFHSLIHYPKEKTA
HHEEEEEECCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCHHCC
SEPAARQDD
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]