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The map label for this gene is ydcP [H]

Identifier: 238894975

GI number: 238894975

Start: 2861568

End: 2863529

Strand: Reverse

Name: ydcP [H]

Synonym: KP1_3001

Alternate gene names: 238894975

Gene position: 2863529-2861568 (Counterclockwise)

Preceding gene: 238894976

Following gene: 238894969

Centisome position: 54.56

GC content: 57.75

Gene sequence:

>1962_bases
ATGCGCCTGCACAATCATCGTCTTGAACTTCTTAGTCCTGCCCGCGACGCCGGTATCGCTCGCGAAGCGATCCTTCACGG
CGCCGATGCCGTTTACATCGGTGGACCTGGCTTTGGCGCTCGCCACAACGCCAGCAACAGTCTAAGCGATATCGCCGGGC
TGGTGCCTTTCGCTCATCGCTTTGGCGCAAAGGTATTTGTGACGCTGAACACCATTCTGCATGACGATGAACTGGAGCCG
GCGCAGCGGCTGATTACCGATCTCTACGACGCAGGCGTCGATGCGCTTATCGTCCAGGATATGGGGATCATGGAGCTGGA
TCTGCCGCCGATTGAGCTGCACGCCAGCACCCAGTGCGATATTCGCAGTGTGGAAAAAGCGAAGTTTCTCTCCGACGCCG
GCTTCAGTCAGATCGTGCTGGCGCGCGAACTGAACCTCAGTCAAATTAAAGCCATTTACGACCACACTGACGCCACTATC
GAATTCTTTATCCATGGCGCGCTGTGCGTGGCCTATTCCGGGCAGTGTTACATTTCGCACGCCCAGACCGGACGCAGCGC
CAACCGCGGCGACTGCTCGCAGGCTTGCCGCTTGCCGTATACCCTGAAGGACGATCAGGGGCGGGTGGTGGCCTATGAGA
AACATCTCCTGTCGATGAAGGATAACGATCAGACCGCCAACCTGGCGGCGCTGATCGACGCTGGCGTACGCTCCTTCAAA
ATTGAAGGCCGTTACAAAGACATGAGTTATGTGAAAAACATCACTGCGCACTACCGTCAAATGCTGGATGCCATTATCGA
AGATCGCGGCGACCTGGCGCGCGCCTCGGCTGGACGCACTGAGCATTTCTTTATCCCGTCCACGGATAAAACCTTCCACC
GGGGCAGCACTGACTACTTTGTTAATGCCCGCAAAGGCGATATCGGCGCCTTTGATTCGCCGAAATTTATCGGCCTGCCG
GTGGGTGAAGTTCTGAAGGTAGGCAAAGACCATCTCGACGTTGAAGTCAGTGAACCGTTAACCAACGGCGATGGTCTCAA
CGTGATGATTAAGCGCGAAGTGGTGGGCTTCCGTGCTAATACCGTGGAAAAAACCGGCGAAAACCGTTATCGGGTATGGC
CGAACGAGATGCCAGCGGATCTGCATAAAGTGCGCCCCCATCAGCCGCTCAACCGCAACCTCGATCATAACTGGCAACAG
GCGCTGCTAAAGACCTCCAGCGAACGCCGCATCGCGGTAGATGTGACGTTGAGCGGCTGGCAGGAGCAGCTGGTTCTCAC
CATGACCTGTGAAGATGGCGTCAGCGTGACCCACACCCTTGACGGGGAGTTCGCCGAAGCTAACCAGGCGGAGAAAGCGT
TGGCCAACCTGCGTGACGGTGTCACAAAACTGGGGCAAACCATCTACTATGCGCGCGAGGTGCAGGTTAATCTTCCGCCG
CTGTTTGTGCCCAACAGCCTGCTCAACCAGCTGCGTCGGGAAACTGCGGAGATGCTGGATGAAGCGCGCCTCAACGCCTG
GCAGCGCGGCACCCGCAAGCCGGTCTCCGTACCGCCGCCGGTCTACCCGGAGACCCATCTCTCCTTCCTCGCCAACGTCT
ATAACCACAAGGCGCGGGCGTTCTACCAGCGCTATGGCGTACAGCTGATCGACGCCGCCTATGAAGCGCACGAAGAGAAG
GGCGATGTGCCGGTGATGATCACTAAGCATTGTCTGCGGTTCGCCTTCAACCTCTGCCCGAAGCAGGCGAAAGGCTCCAT
TAAGAGCTGGAAAGCCACGCCGATGCAGCTGATCCATGGCGATGAGGTCCTGACCCTGAAGTTTGACTGCCGTCCGTGCG
AAATGCACGTGGTCGGCAAGATCAAAAACCATATCCTCAAAATGCCGCACCCGGGCAGCATTGTGGCCTCCGTCAGCCCG
GACGATCTGATGAAGACGCTGCCGAAGCGCAAAGGGGCCTGA

Upstream 100 bases:

>100_bases
ATTCGTCGTCGCGCGACGGCGGAAAAGGTTTTCGTCTGCGCCCGGTTCTGACTACAATAGCCGCCATTTCGACCCCCTTA
TACTGGATAACAACACGCGT

Downstream 100 bases:

>100_bases
TTCGAGTCGATGCTATTGGCAGGATGCCCGCGGTTTACGGTCGTCCTGCCAGCGGTGATGTTCGCGCAGGTCTGCGGCGG
CCTCCTCGTGCTGGCTGCGA

Product: putative protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 653; Mature: 653

Protein sequence:

>653_residues
MRLHNHRLELLSPARDAGIAREAILHGADAVYIGGPGFGARHNASNSLSDIAGLVPFAHRFGAKVFVTLNTILHDDELEP
AQRLITDLYDAGVDALIVQDMGIMELDLPPIELHASTQCDIRSVEKAKFLSDAGFSQIVLARELNLSQIKAIYDHTDATI
EFFIHGALCVAYSGQCYISHAQTGRSANRGDCSQACRLPYTLKDDQGRVVAYEKHLLSMKDNDQTANLAALIDAGVRSFK
IEGRYKDMSYVKNITAHYRQMLDAIIEDRGDLARASAGRTEHFFIPSTDKTFHRGSTDYFVNARKGDIGAFDSPKFIGLP
VGEVLKVGKDHLDVEVSEPLTNGDGLNVMIKREVVGFRANTVEKTGENRYRVWPNEMPADLHKVRPHQPLNRNLDHNWQQ
ALLKTSSERRIAVDVTLSGWQEQLVLTMTCEDGVSVTHTLDGEFAEANQAEKALANLRDGVTKLGQTIYYAREVQVNLPP
LFVPNSLLNQLRRETAEMLDEARLNAWQRGTRKPVSVPPPVYPETHLSFLANVYNHKARAFYQRYGVQLIDAAYEAHEEK
GDVPVMITKHCLRFAFNLCPKQAKGSIKSWKATPMQLIHGDEVLTLKFDCRPCEMHVVGKIKNHILKMPHPGSIVASVSP
DDLMKTLPKRKGA

Sequences:

>Translated_653_residues
MRLHNHRLELLSPARDAGIAREAILHGADAVYIGGPGFGARHNASNSLSDIAGLVPFAHRFGAKVFVTLNTILHDDELEP
AQRLITDLYDAGVDALIVQDMGIMELDLPPIELHASTQCDIRSVEKAKFLSDAGFSQIVLARELNLSQIKAIYDHTDATI
EFFIHGALCVAYSGQCYISHAQTGRSANRGDCSQACRLPYTLKDDQGRVVAYEKHLLSMKDNDQTANLAALIDAGVRSFK
IEGRYKDMSYVKNITAHYRQMLDAIIEDRGDLARASAGRTEHFFIPSTDKTFHRGSTDYFVNARKGDIGAFDSPKFIGLP
VGEVLKVGKDHLDVEVSEPLTNGDGLNVMIKREVVGFRANTVEKTGENRYRVWPNEMPADLHKVRPHQPLNRNLDHNWQQ
ALLKTSSERRIAVDVTLSGWQEQLVLTMTCEDGVSVTHTLDGEFAEANQAEKALANLRDGVTKLGQTIYYAREVQVNLPP
LFVPNSLLNQLRRETAEMLDEARLNAWQRGTRKPVSVPPPVYPETHLSFLANVYNHKARAFYQRYGVQLIDAAYEAHEEK
GDVPVMITKHCLRFAFNLCPKQAKGSIKSWKATPMQLIHGDEVLTLKFDCRPCEMHVVGKIKNHILKMPHPGSIVASVSP
DDLMKTLPKRKGA
>Mature_653_residues
MRLHNHRLELLSPARDAGIAREAILHGADAVYIGGPGFGARHNASNSLSDIAGLVPFAHRFGAKVFVTLNTILHDDELEP
AQRLITDLYDAGVDALIVQDMGIMELDLPPIELHASTQCDIRSVEKAKFLSDAGFSQIVLARELNLSQIKAIYDHTDATI
EFFIHGALCVAYSGQCYISHAQTGRSANRGDCSQACRLPYTLKDDQGRVVAYEKHLLSMKDNDQTANLAALIDAGVRSFK
IEGRYKDMSYVKNITAHYRQMLDAIIEDRGDLARASAGRTEHFFIPSTDKTFHRGSTDYFVNARKGDIGAFDSPKFIGLP
VGEVLKVGKDHLDVEVSEPLTNGDGLNVMIKREVVGFRANTVEKTGENRYRVWPNEMPADLHKVRPHQPLNRNLDHNWQQ
ALLKTSSERRIAVDVTLSGWQEQLVLTMTCEDGVSVTHTLDGEFAEANQAEKALANLRDGVTKLGQTIYYAREVQVNLPP
LFVPNSLLNQLRRETAEMLDEARLNAWQRGTRKPVSVPPPVYPETHLSFLANVYNHKARAFYQRYGVQLIDAAYEAHEEK
GDVPVMITKHCLRFAFNLCPKQAKGSIKSWKATPMQLIHGDEVLTLKFDCRPCEMHVVGKIKNHILKMPHPGSIVASVSP
DDLMKTLPKRKGA

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=653, Percent_Identity=87.2894333843798, Blast_Score=1219, Evalue=0.0,
Organism=Escherichia coli, GI1788397, Length=441, Percent_Identity=28.7981859410431, Blast_Score=132, Evalue=5e-32,
Organism=Escherichia coli, GI1789548, Length=307, Percent_Identity=30.9446254071661, Blast_Score=106, Evalue=5e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020988
- InterPro:   IPR001539 [H]

Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 72824; Mature: 72824

Theoretical pI: Translated: 7.31; Mature: 7.31

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLHNHRLELLSPARDAGIAREAILHGADAVYIGGPGFGARHNASNSLSDIAGLVPFAHR
CCCCCCHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
FGAKVFVTLNTILHDDELEPAQRLITDLYDAGVDALIVQDMGIMELDLPPIELHASTQCD
CCCEEEEEEEEHHCCCCCCHHHHHHHHHHHCCCCEEEECCCCEEEECCCCEEEECCCCCC
IRSVEKAKFLSDAGFSQIVLARELNLSQIKAIYDHTDATIEFFIHGALCVAYSGQCYISH
HHHHHHHHHHHCCCCHHEEHHHHCCHHHHHHHHCCCCCEEEEEEEEEEEEEECCCEEEEE
AQTGRSANRGDCSQACRLPYTLKDDQGRVVAYEKHLLSMKDNDQTANLAALIDAGVRSFK
CCCCCCCCCCCHHHHHCCCCEEECCCCCEEEEEHHHHCCCCCCCHHHHHHHHHHCCCEEE
IEGRYKDMSYVKNITAHYRQMLDAIIEDRGDLARASAGRTEHFFIPSTDKTFHRGSTDYF
ECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCEEEEECCCCCCCCCCCCCEE
VNARKGDIGAFDSPKFIGLPVGEVLKVGKDHLDVEVSEPLTNGDGLNVMIKREVVGFRAN
EECCCCCCCCCCCCCEECCCHHHHHHCCCCCCCEEECCCCCCCCCCEEEEEEEECCCCCC
TVEKTGENRYRVWPNEMPADLHKVRPHQPLNRNLDHNWQQALLKTSSERRIAVDVTLSGW
CHHHCCCCCEEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEECCC
QEQLVLTMTCEDGVSVTHTLDGEFAEANQAEKALANLRDGVTKLGQTIYYAREVQVNLPP
CCEEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCC
LFVPNSLLNQLRRETAEMLDEARLNAWQRGTRKPVSVPPPVYPETHLSFLANVYNHKARA
EECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
FYQRYGVQLIDAAYEAHEEKGDVPVMITKHCLRFAFNLCPKQAKGSIKSWKATPMQLIHG
HHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHCCCCCCCCCCCEEEEEC
DEVLTLKFDCRPCEMHVVGKIKNHILKMPHPGSIVASVSPDDLMKTLPKRKGA
CEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHCCCC
>Mature Secondary Structure
MRLHNHRLELLSPARDAGIAREAILHGADAVYIGGPGFGARHNASNSLSDIAGLVPFAHR
CCCCCCHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
FGAKVFVTLNTILHDDELEPAQRLITDLYDAGVDALIVQDMGIMELDLPPIELHASTQCD
CCCEEEEEEEEHHCCCCCCHHHHHHHHHHHCCCCEEEECCCCEEEECCCCEEEECCCCCC
IRSVEKAKFLSDAGFSQIVLARELNLSQIKAIYDHTDATIEFFIHGALCVAYSGQCYISH
HHHHHHHHHHHCCCCHHEEHHHHCCHHHHHHHHCCCCCEEEEEEEEEEEEEECCCEEEEE
AQTGRSANRGDCSQACRLPYTLKDDQGRVVAYEKHLLSMKDNDQTANLAALIDAGVRSFK
CCCCCCCCCCCHHHHHCCCCEEECCCCCEEEEEHHHHCCCCCCCHHHHHHHHHHCCCEEE
IEGRYKDMSYVKNITAHYRQMLDAIIEDRGDLARASAGRTEHFFIPSTDKTFHRGSTDYF
ECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCEEEEECCCCCCCCCCCCCEE
VNARKGDIGAFDSPKFIGLPVGEVLKVGKDHLDVEVSEPLTNGDGLNVMIKREVVGFRAN
EECCCCCCCCCCCCCEECCCHHHHHHCCCCCCCEEECCCCCCCCCCEEEEEEEECCCCCC
TVEKTGENRYRVWPNEMPADLHKVRPHQPLNRNLDHNWQQALLKTSSERRIAVDVTLSGW
CHHHCCCCCEEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEECCC
QEQLVLTMTCEDGVSVTHTLDGEFAEANQAEKALANLRDGVTKLGQTIYYAREVQVNLPP
CCEEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCC
LFVPNSLLNQLRRETAEMLDEARLNAWQRGTRKPVSVPPPVYPETHLSFLANVYNHKARA
EECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
FYQRYGVQLIDAAYEAHEEKGDVPVMITKHCLRFAFNLCPKQAKGSIKSWKATPMQLIHG
HHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHCCCCCCCCCCCEEEEEC
DEVLTLKFDCRPCEMHVVGKIKNHILKMPHPGSIVASVSPDDLMKTLPKRKGA
CEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]