Click here to switch to the map view.

The map label for this gene is ydcU [H]

Identifier: 238894965

GI number: 238894965

Start: 2852753

End: 2853682

Strand: Reverse

Name: ydcU [H]

Synonym: KP1_2991

Alternate gene names: 238894965

Gene position: 2853682-2852753 (Counterclockwise)

Preceding gene: 238894966

Following gene: 238894964

Centisome position: 54.37

GC content: 60.65

Gene sequence:

>930_bases
ATGACCATGGCAATAACTCCTGCGCAGACCGGGCGCATATCGGGGATCTTCTGGCGCCGACCGGCGCTGGGCCTGTTTTT
ACTGCTGCTCGGGCCGCTGATGTGGTTTGGCATCGTCTATCTGGGATCGCTGCTGACCCTGCTGTGGCAGAGCATTTATA
CCTTTGACGACTTCACCATGTCGGTGACCAGCGACTTCACGCTGGCTAACCTGCGGGCGCTGTTCAACCCTGCCAACTAC
GACATTATTGTGCGGACCCTGGTGATGGCGCTGTGCGTCACGCTGGCCAGCGCGCTGCTGGCACTGCCGATGGCCTGGTA
TATGGCGCGCTACACCAGCGGCAAAATGAAGGCCTTCTTTTATATCGCGGTCATGCTACCAATGTGGGCCAGCTATATCG
TCAAAGCCTATGCGTGGGTGCTGCTGCTGGCGAAAGATGGCGTGGCGCAGTGGTTCCTCGGTCATCTTGGACTGGAGGGG
GCGCTGAACGCGCTGTTGAGCGTCCCGGCGGTCGGCGGCAATACCTTGTCCACCTCCGGCCTTGGACGCTTTCTGGTGTT
CGTCTACATCTGGCTGCCGTTTATGATCCTGCCGGTGCAGGCGGCGCTGGAGCGTATTCCGGGATCGTTGCTACAGGCCT
CGGCCGATCTCGGCGCGGCCCCGCGGCAGACCTTTCGCTACGTGGTGCTGCCGCTGGCCATTCCCGGCATCGCCGCTGGG
TCGATCTTCACCTTTTCGCTGACGCTAGGCGACTTTATCGTGCCGCAGCTGGTGGGCCCGCCGGGATACTTTATCGGCAA
TATGGTTTACTCGCAGCAGGGGGCGATCGGCAATATGCCGATGGCGGCGGCGTTTACCCTGGTGCCTATCGTCTTGATTG
CCCTCTATCTGGCGTTCGTGAAACGTCTGGGAGCCTTCGATGCACTCTGA

Upstream 100 bases:

>100_bases
ATCGATGGCGCGGCGGCGGCCAGCGTTCCGCGAACCGGGGAAATAGTACAGGCGTCATGGTCGCGCTCGGCGATGACCCC
GCTGGAAAGCGGAGGCTGAG

Downstream 100 bases:

>100_bases
ACGCGCGCCCTGGTATCTGCGACTGGCGACCTGGGGCGGGGTGATATTCCTCCACTTTCCGCTGCTGATTATCGCCATCT
ATGCTTTTAATACGGAAGAT

Product: putative transport system permease component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 308

Protein sequence:

>309_residues
MTMAITPAQTGRISGIFWRRPALGLFLLLLGPLMWFGIVYLGSLLTLLWQSIYTFDDFTMSVTSDFTLANLRALFNPANY
DIIVRTLVMALCVTLASALLALPMAWYMARYTSGKMKAFFYIAVMLPMWASYIVKAYAWVLLLAKDGVAQWFLGHLGLEG
ALNALLSVPAVGGNTLSTSGLGRFLVFVYIWLPFMILPVQAALERIPGSLLQASADLGAAPRQTFRYVVLPLAIPGIAAG
SIFTFSLTLGDFIVPQLVGPPGYFIGNMVYSQQGAIGNMPMAAAFTLVPIVLIALYLAFVKRLGAFDAL

Sequences:

>Translated_309_residues
MTMAITPAQTGRISGIFWRRPALGLFLLLLGPLMWFGIVYLGSLLTLLWQSIYTFDDFTMSVTSDFTLANLRALFNPANY
DIIVRTLVMALCVTLASALLALPMAWYMARYTSGKMKAFFYIAVMLPMWASYIVKAYAWVLLLAKDGVAQWFLGHLGLEG
ALNALLSVPAVGGNTLSTSGLGRFLVFVYIWLPFMILPVQAALERIPGSLLQASADLGAAPRQTFRYVVLPLAIPGIAAG
SIFTFSLTLGDFIVPQLVGPPGYFIGNMVYSQQGAIGNMPMAAAFTLVPIVLIALYLAFVKRLGAFDAL
>Mature_308_residues
TMAITPAQTGRISGIFWRRPALGLFLLLLGPLMWFGIVYLGSLLTLLWQSIYTFDDFTMSVTSDFTLANLRALFNPANYD
IIVRTLVMALCVTLASALLALPMAWYMARYTSGKMKAFFYIAVMLPMWASYIVKAYAWVLLLAKDGVAQWFLGHLGLEGA
LNALLSVPAVGGNTLSTSGLGRFLVFVYIWLPFMILPVQAALERIPGSLLQASADLGAAPRQTFRYVVLPLAIPGIAAGS
IFTFSLTLGDFIVPQLVGPPGYFIGNMVYSQQGAIGNMPMAAAFTLVPIVLIALYLAFVKRLGAFDAL

Specific function: Probably part of the binding-protein-dependent transport system ydcSTUV; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1176

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component I

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787713, Length=299, Percent_Identity=88.9632107023411, Blast_Score=503, Evalue=1e-144,
Organism=Escherichia coli, GI1787080, Length=239, Percent_Identity=31.7991631799163, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1787369, Length=254, Percent_Identity=31.1023622047244, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1787368, Length=125, Percent_Identity=32, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33618; Mature: 33487

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMAITPAQTGRISGIFWRRPALGLFLLLLGPLMWFGIVYLGSLLTLLWQSIYTFDDFTM
CCEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
SVTSDFTLANLRALFNPANYDIIVRTLVMALCVTLASALLALPMAWYMARYTSGKMKAFF
HHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
YIAVMLPMWASYIVKAYAWVLLLAKDGVAQWFLGHLGLEGALNALLSVPAVGGNTLSTSG
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCHHH
LGRFLVFVYIWLPFMILPVQAALERIPGSLLQASADLGAAPRQTFRYVVLPLAIPGIAAG
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCC
SIFTFSLTLGDFIVPQLVGPPGYFIGNMVYSQQGAIGNMPMAAAFTLVPIVLIALYLAFV
CCEEEEEHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
KRLGAFDAL
HHHCCCCCC
>Mature Secondary Structure 
TMAITPAQTGRISGIFWRRPALGLFLLLLGPLMWFGIVYLGSLLTLLWQSIYTFDDFTM
CEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE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HHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]