Click here to switch to the map view.

The map label for this gene is ydcV [H]

Identifier: 238894964

GI number: 238894964

Start: 2851957

End: 2852763

Strand: Reverse

Name: ydcV [H]

Synonym: KP1_2990

Alternate gene names: 238894964

Gene position: 2852763-2851957 (Counterclockwise)

Preceding gene: 238894965

Following gene: 238894963

Centisome position: 54.35

GC content: 60.1

Gene sequence:

>807_bases
ATGCACTCTGAACGCGCGCCCTGGTATCTGCGACTGGCGACCTGGGGCGGGGTGATATTCCTCCACTTTCCGCTGCTGAT
TATCGCCATCTATGCTTTTAATACGGAAGATGCAGCTTTTAGCTTTCCGCCGCAGGGGCTGACGCTGCGCTGGTTCAGCG
AGGCGGCCGGGCGCAGCGACATTCTGCAGGCAGTGACGCTGTCACTTAAGATCGCCGCCCTGTCGACCGCCATTGCCTTA
GTGCTTGGCACGCTGGCTGCAGGAGCCCTGTGGCGCAGCGCCTTTTTTGGCAAAAATGCGGTGTCGCTACTGCTGCTGCT
GCCTATCGCCCTGCCGGGGATCATTACCGGCCTGGCACTCCTGACGGCGTTCAAAGCGGTCGGCCTTGAGCCTGGCCTGC
TGACGATCGTGGTGGGGCACGCGACCTTCTGCGTGGTGGTGGTGTTTAACAACGTCATCGCCCGTTTCCGCCGGACTTCG
TGGAGTATGGTGGAAGCCTCGATGGATTTAGGCGCTACCGGTTGGCAGACCTTTCGTTACGTAGTGCTGCCCAATCTGGG
GTCGGCGCTGCTGGCGGGGGGAATGCTGGCATTCGCTCTGTCGTTTGATGAAATTATCGTTACCACTTTTACCGCGGGGC
ATGAACGCACCTTGCCGCTGTGGTTGCTGAATCAGCTGGGGCGGCCGCGAGATGTGCCCGTCACCAACGTTGTCGCGCTG
TTGGTGATGCTGGTAACGACGATACCAATCTTAGGGGCCTGGTGGCTCACCCGCGACGGCGATAACGACGCCGGAAACGG
GAAATAA

Upstream 100 bases:

>100_bases
GGGGCGATCGGCAATATGCCGATGGCGGCGGCGTTTACCCTGGTGCCTATCGTCTTGATTGCCCTCTATCTGGCGTTCGT
GAAACGTCTGGGAGCCTTCG

Downstream 100 bases:

>100_bases
AACCATGAAACAGGATAATGCTATGCAACACAACCTATTGATAAACGGTAAGTTAGTGGCAGGTGAAGGCGAGAAGGTTC
CGGTATATAACCCTGCAACC

Product: putative transport system permease component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MHSERAPWYLRLATWGGVIFLHFPLLIIAIYAFNTEDAAFSFPPQGLTLRWFSEAAGRSDILQAVTLSLKIAALSTAIAL
VLGTLAAGALWRSAFFGKNAVSLLLLLPIALPGIITGLALLTAFKAVGLEPGLLTIVVGHATFCVVVVFNNVIARFRRTS
WSMVEASMDLGATGWQTFRYVVLPNLGSALLAGGMLAFALSFDEIIVTTFTAGHERTLPLWLLNQLGRPRDVPVTNVVAL
LVMLVTTIPILGAWWLTRDGDNDAGNGK

Sequences:

>Translated_268_residues
MHSERAPWYLRLATWGGVIFLHFPLLIIAIYAFNTEDAAFSFPPQGLTLRWFSEAAGRSDILQAVTLSLKIAALSTAIAL
VLGTLAAGALWRSAFFGKNAVSLLLLLPIALPGIITGLALLTAFKAVGLEPGLLTIVVGHATFCVVVVFNNVIARFRRTS
WSMVEASMDLGATGWQTFRYVVLPNLGSALLAGGMLAFALSFDEIIVTTFTAGHERTLPLWLLNQLGRPRDVPVTNVVAL
LVMLVTTIPILGAWWLTRDGDNDAGNGK
>Mature_268_residues
MHSERAPWYLRLATWGGVIFLHFPLLIIAIYAFNTEDAAFSFPPQGLTLRWFSEAAGRSDILQAVTLSLKIAALSTAIAL
VLGTLAAGALWRSAFFGKNAVSLLLLLPIALPGIITGLALLTAFKAVGLEPGLLTIVVGHATFCVVVVFNNVIARFRRTS
WSMVEASMDLGATGWQTFRYVVLPNLGSALLAGGMLAFALSFDEIIVTTFTAGHERTLPLWLLNQLGRPRDVPVTNVVAL
LVMLVTTIPILGAWWLTRDGDNDAGNGK

Specific function: Probably part of the binding-protein-dependent transport system ydcSTUV; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787714, Length=262, Percent_Identity=89.3129770992366, Blast_Score=417, Evalue=1e-118,
Organism=Escherichia coli, GI1787368, Length=226, Percent_Identity=30.9734513274336, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1787081, Length=267, Percent_Identity=33.7078651685393, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1787080, Length=223, Percent_Identity=27.8026905829596, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 28873; Mature: 28873

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSERAPWYLRLATWGGVIFLHFPLLIIAIYAFNTEDAAFSFPPQGLTLRWFSEAAGRSD
CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCEECCCCCCEEEEHHHHCCHHH
ILQAVTLSLKIAALSTAIALVLGTLAAGALWRSAFFGKNAVSLLLLLPIALPGIITGLAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
LTAFKAVGLEPGLLTIVVGHATFCVVVVFNNVIARFRRTSWSMVEASMDLGATGWQTFRY
HHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHEEE
VVLPNLGSALLAGGMLAFALSFDEIIVTTFTAGHERTLPLWLLNQLGRPRDVPVTNVVAL
EEECCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCHHHHHHHCCCCCCCCHHHHHHH
LVMLVTTIPILGAWWLTRDGDNDAGNGK
HHHHHHHHHHHHHHEEECCCCCCCCCCC
>Mature Secondary Structure
MHSERAPWYLRLATWGGVIFLHFPLLIIAIYAFNTEDAAFSFPPQGLTLRWFSEAAGRSD
CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCEECCCCCCEEEEHHHHCCHHH
ILQAVTLSLKIAALSTAIALVLGTLAAGALWRSAFFGKNAVSLLLLLPIALPGIITGLAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
LTAFKAVGLEPGLLTIVVGHATFCVVVVFNNVIARFRRTSWSMVEASMDLGATGWQTFRY
HHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHEEE
VVLPNLGSALLAGGMLAFALSFDEIIVTTFTAGHERTLPLWLLNQLGRPRDVPVTNVVAL
EEECCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCHHHHHHHCCCCCCCCHHHHHHH
LVMLVTTIPILGAWWLTRDGDNDAGNGK
HHHHHHHHHHHHHHEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]