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The map label for this gene is ydcN [C]

Identifier: 238894952

GI number: 238894952

Start: 2842676

End: 2843257

Strand: Reverse

Name: ydcN [C]

Synonym: KP1_2977

Alternate gene names: 238894952

Gene position: 2843257-2842676 (Counterclockwise)

Preceding gene: 238894955

Following gene: 238894951

Centisome position: 54.17

GC content: 62.03

Gene sequence:

>582_bases
ATGAATACTATAGAAGACAACCTCAATCAGCGCATCAGCGCGCGCATCCGCATCGAGCGCGAGTCCCGCGGCTGGTCGCT
GAACGACCTCGCCGAACGGGCCGGCGCCTCGCGGGCGATGATCCATAAAATCGAGCGCGGCGAAAGCAGCCCGACCGCCT
CGATGCTGGGCCGCCTTTCCGGCGCCTTCGGCATCAGTATGTCGACCCTGATCGCCCGCGCGGAAATGCAGGAGGGCAAG
CTGCTGCGCTTTGCCAGCCAGCCGGTATGGCGCGACCCGCAAAGCCACTATCTCCGCCGCCACGTTTCGCCGCGCAGCGA
TTTGCCGATCGATCTGGTGCAGATTGAGCTGCCGCCCGGTAGCGATGTGCCGATGCCCGCCGCGTCCTATGCGCTTGCCC
GCCAGCTAATCTGGCTGCAACAGGGCGAGCTGATGTTTGTCGAAGGCAATACCCGCCATGAGATGCAGGCGGGGGATTGT
CTGGAGCTTGGCCCGCCCAACGATTGTCGCTTTATTAATGAATCCGCAGAGACCTGCGTCTATCTGGTGGTTCGCCTTAA
TCAATCGCCATCCGGCTCTTAA

Upstream 100 bases:

>100_bases
CTGTCATCCGTTTTCAGCATAATTTTAACGGCTAACCCGGGAATAACGCGTCTCGGTGGATGGTTGTGTAATGGGGGGGC
GCACACTATAGTGTTACGTT

Downstream 100 bases:

>100_bases
TGGTAAAGCACGTTGCGCATAAAGCAGCTAGCCTCAGTACAGTCTGCTAACAAGAGGAGTTTGCTATGACAGATCAACCG
CAACGCCATCGCCGCTGGGT

Product: putative regulator

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator XRE Family; Transcriptional Regulator Protein; Helix-Turn-Helix Domain Protein; Xre Family xin-Antitoxin System Antitoxin Component; Transcription Regulator Protein; Transcriptional Regulatory Protein; Helix-Turn-Helix Domain-Containing Protein; Helix-Turn-Helix Family Protein; Transcriptional Regulator With Cupin 2 Conserved Barrel; Transcriptional Regulator Protein LacI Family; HTH-Type Transcriptional Regulatory Protein; Transcriptional Regulator XRE Family With Cupin Sensor; Transcriptional Regulatory Protein With Hth Domain

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MNTIEDNLNQRISARIRIERESRGWSLNDLAERAGASRAMIHKIERGESSPTASMLGRLSGAFGISMSTLIARAEMQEGK
LLRFASQPVWRDPQSHYLRRHVSPRSDLPIDLVQIELPPGSDVPMPAASYALARQLIWLQQGELMFVEGNTRHEMQAGDC
LELGPPNDCRFINESAETCVYLVVRLNQSPSGS

Sequences:

>Translated_193_residues
MNTIEDNLNQRISARIRIERESRGWSLNDLAERAGASRAMIHKIERGESSPTASMLGRLSGAFGISMSTLIARAEMQEGK
LLRFASQPVWRDPQSHYLRRHVSPRSDLPIDLVQIELPPGSDVPMPAASYALARQLIWLQQGELMFVEGNTRHEMQAGDC
LELGPPNDCRFINESAETCVYLVVRLNQSPSGS
>Mature_193_residues
MNTIEDNLNQRISARIRIERESRGWSLNDLAERAGASRAMIHKIERGESSPTASMLGRLSGAFGISMSTLIARAEMQEGK
LLRFASQPVWRDPQSHYLRRHVSPRSDLPIDLVQIELPPGSDVPMPAASYALARQLIWLQQGELMFVEGNTRHEMQAGDC
LELGPPNDCRFINESAETCVYLVVRLNQSPSGS

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21544; Mature: 21544

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTIEDNLNQRISARIRIERESRGWSLNDLAERAGASRAMIHKIERGESSPTASMLGRLS
CCCHHHHHHHHEEEEEEEEECCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHH
GAFGISMSTLIARAEMQEGKLLRFASQPVWRDPQSHYLRRHVSPRSDLPIDLVQIELPPG
CCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHCCCCCCCCCEEEEEEECCCC
SDVPMPAASYALARQLIWLQQGELMFVEGNTRHEMQAGDCLELGPPNDCRFINESAETCV
CCCCCCHHHHHHHHHHHHEECCCEEEEECCCCCCCCCCCEEECCCCCCCEEECCCHHEEE
YLVVRLNQSPSGS
EEEEEECCCCCCC
>Mature Secondary Structure
MNTIEDNLNQRISARIRIERESRGWSLNDLAERAGASRAMIHKIERGESSPTASMLGRLS
CCCHHHHHHHHEEEEEEEEECCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHH
GAFGISMSTLIARAEMQEGKLLRFASQPVWRDPQSHYLRRHVSPRSDLPIDLVQIELPPG
CCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHCCCCCCCCCEEEEEEECCCC
SDVPMPAASYALARQLIWLQQGELMFVEGNTRHEMQAGDCLELGPPNDCRFINESAETCV
CCCCCCHHHHHHHHHHHHEECCCEEEEECCCCCCCCCCCEEECCCCCCCEEECCCHHEEE
YLVVRLNQSPSGS
EEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA