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The map label for this gene is yncD [H]

Identifier: 238894947

GI number: 238894947

Start: 2835886

End: 2837991

Strand: Direct

Name: yncD [H]

Synonym: KP1_2972

Alternate gene names: 238894947

Gene position: 2835886-2837991 (Clockwise)

Preceding gene: 238894944

Following gene: 238894948

Centisome position: 54.03

GC content: 61.4

Gene sequence:

>2106_bases
ATGAAAATCCTGTCCGTGCGTCACGCCGCCCTCCCGGCCCTGCTCTTGCCGCTCATTGCGGCAGCCCAGGCCGCTGATGA
ACAAACCATGGTGGTGACCGCCGCGCCAACCACGGTTTCTGAACTGGATACCCCCGCCGCCGTCAGCGTGGTGAATGGGG
ATGAGATGCGCCAGGCCGCGCCGCGCGTCAATCTCTCTGAATCGCTGGGCGCCGTGCCGGGCCTGCAGGTGCAGAACCGG
CAAAACTATGCCCAGGATCTGCAGCTGTCGATTCGCGGCTTTGGCTCGCGCTCAACCTATGGCGTGCGCGGACTGCGCAT
CTATGTGGATGGCATTCCGGCCACCATGCCCGACGGCCAGGGGCAGACCTCAAATATTGATATCGGCAGCGTTGACACCA
TTGAGGTGCTGCGCGGCCCCTTCTCTGCCCTGTACGGTAACTCGTCCGGCGGGGTGATCAACGTCACCAGCCAGACCGGC
ACCCAGCCGCCCACCGTGGAAGCCAGCAGCTACTATGGCAGCTTCGGCACCTGGCACTACGGGATGAAAGCCACTGGCGC
CGTTGGCGACGGCAGCCACGCAGGCGATGTGGATTACACGGTCTCAACCAATCGCTTCACCACCCATGGCTATCGCGATC
ACAGCGGCGCGCGCAAAAATCTGGCGAACGCCCGGCTGGGGGTGCGCATCAACGACGTCAGTAAGCTGACTCTGCTGCTG
AATAGCGTGGATATCAAAGCCAATGACGCCGGTGGCCTGACCGCCGATGAATGGCGCGATAACCCGCGCCAGTCGCCGCG
CGGCGACCAGTATAATACCCGCAAGAATACCCGACAGACCCAGGCCGGCCTGCGCTATGAGCGCCAGCTCAGTGCCCAGG
ACGATCTCAGCGTTATGATGTACGCTGGAGAACGTGAAACCACTCAGTTCCAGTCGATCCCGCGCGCGCCGCAGCTGAAG
CCGAGCCATGCCGGCGGGGTGATCGACCTTACCCGTCACTACCAGGGGATCGATACCCGGCTGACCCATCGCGGAGAGCT
GCTGGTGCCCGTCACGCTCACCGCCGGTCTCGACTACGAAAACATGAGCGAGCGGCGCAAAGGGTATGAAAACTTTGTGA
TGGTCAACGGCGCGCCGCAGTATGGCGAACAGGGCGCGCTGCGCCGTAACGAACGCAACCTGATGTGGAACGTCGACCCC
TACCTGCAGACCCAGTGGCAGCTCACTGACAAACTCTCGCTCGATGCCGGGGTTCGCTACAGCTCGGTATGGTTCGACTC
GAACGACTACTACATCACCCCAGGCAATGGCGATGACAGCGGTGATGCCAGCTATCACAAATGGCTGCCCGCGGGCTCGC
TGAAATATGCCCTGACCGACGCGTGGAACGTCTATCTTTCCGCCGGCCGCGGCTTCGAGACGCCAACCATTAACGAACTC
TCCTACCGCTCCGATAACCAGAGCGGCCTCAACTTCGGCCTGAAACCCTCCACCAACGACACGGTGGAGATCGGCAGCAA
GACGCGGATCGGCAATGGGCTGTTCACCGCCGCCCTGTTCCAGACCAATACCGATAATGAGATTGTGGTCGACAGCAGCA
GCGGCGGGCGCACCAGTTATAAAAACGCCGGCAAGACCCGCCGTCAGGGGATGGAGCTGGGGCTGGATCAGCAGTTTGGC
GAGAGCTGGCGTCTGAAGGCGGCCTGGACCTGGCTGGACGCGACCTATCGCACTAACGTCTGCGACGACGCCAGCTGCAA
TGGCAATCGCATTCCGGGGATCGCGCGCAATATGGGCTACGCCTCCTTTGGCTATCAGCCGGAGCAAGGTTGGTACGCCG
GGAGCGATATTCGCTATATGAGCGATATCATGGCCAATGACGAAAACACCGCCAAAGCGCCCTCCTGGACGGTGGTTGGC
CTGACGACTGGCTATAAATGGAGCTACGGCAGGATGGATATGGATCTGTTCGGTCGCATCGACAACCTGTTCGACCGGGA
GTACGTCGGGTCTGTCATCGTTAACGAGTCTAACGGACGTTACTACGAGCCTGCCCCGGGACGTAACTACGGCATCGGCC
TGAACCTCGCCTGGCGCTTCGAATAA

Upstream 100 bases:

>100_bases
ACTATCCGTTAACCAGTAGCAGTTAATAATTTTCAAATATTTTACAAACGAGGTAACATATATACATATGTTCCATTTGG
TTCGTCTTTGAGTATTATCG

Downstream 100 bases:

>100_bases
CACGCCCCTTCCCCGCCGATGCCTCTCGCGATCGGCGGGCGAAGCGCTTTTCCTTACCGTCTATTCCACCGCCAGGCGGA
TACCCGCCAACCACCCGCGC

Product: putative tonB-dependent receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 701; Mature: 701

Protein sequence:

>701_residues
MKILSVRHAALPALLLPLIAAAQAADEQTMVVTAAPTTVSELDTPAAVSVVNGDEMRQAAPRVNLSESLGAVPGLQVQNR
QNYAQDLQLSIRGFGSRSTYGVRGLRIYVDGIPATMPDGQGQTSNIDIGSVDTIEVLRGPFSALYGNSSGGVINVTSQTG
TQPPTVEASSYYGSFGTWHYGMKATGAVGDGSHAGDVDYTVSTNRFTTHGYRDHSGARKNLANARLGVRINDVSKLTLLL
NSVDIKANDAGGLTADEWRDNPRQSPRGDQYNTRKNTRQTQAGLRYERQLSAQDDLSVMMYAGERETTQFQSIPRAPQLK
PSHAGGVIDLTRHYQGIDTRLTHRGELLVPVTLTAGLDYENMSERRKGYENFVMVNGAPQYGEQGALRRNERNLMWNVDP
YLQTQWQLTDKLSLDAGVRYSSVWFDSNDYYITPGNGDDSGDASYHKWLPAGSLKYALTDAWNVYLSAGRGFETPTINEL
SYRSDNQSGLNFGLKPSTNDTVEIGSKTRIGNGLFTAALFQTNTDNEIVVDSSSGGRTSYKNAGKTRRQGMELGLDQQFG
ESWRLKAAWTWLDATYRTNVCDDASCNGNRIPGIARNMGYASFGYQPEQGWYAGSDIRYMSDIMANDENTAKAPSWTVVG
LTTGYKWSYGRMDMDLFGRIDNLFDREYVGSVIVNESNGRYYEPAPGRNYGIGLNLAWRFE

Sequences:

>Translated_701_residues
MKILSVRHAALPALLLPLIAAAQAADEQTMVVTAAPTTVSELDTPAAVSVVNGDEMRQAAPRVNLSESLGAVPGLQVQNR
QNYAQDLQLSIRGFGSRSTYGVRGLRIYVDGIPATMPDGQGQTSNIDIGSVDTIEVLRGPFSALYGNSSGGVINVTSQTG
TQPPTVEASSYYGSFGTWHYGMKATGAVGDGSHAGDVDYTVSTNRFTTHGYRDHSGARKNLANARLGVRINDVSKLTLLL
NSVDIKANDAGGLTADEWRDNPRQSPRGDQYNTRKNTRQTQAGLRYERQLSAQDDLSVMMYAGERETTQFQSIPRAPQLK
PSHAGGVIDLTRHYQGIDTRLTHRGELLVPVTLTAGLDYENMSERRKGYENFVMVNGAPQYGEQGALRRNERNLMWNVDP
YLQTQWQLTDKLSLDAGVRYSSVWFDSNDYYITPGNGDDSGDASYHKWLPAGSLKYALTDAWNVYLSAGRGFETPTINEL
SYRSDNQSGLNFGLKPSTNDTVEIGSKTRIGNGLFTAALFQTNTDNEIVVDSSSGGRTSYKNAGKTRRQGMELGLDQQFG
ESWRLKAAWTWLDATYRTNVCDDASCNGNRIPGIARNMGYASFGYQPEQGWYAGSDIRYMSDIMANDENTAKAPSWTVVG
LTTGYKWSYGRMDMDLFGRIDNLFDREYVGSVIVNESNGRYYEPAPGRNYGIGLNLAWRFE
>Mature_701_residues
MKILSVRHAALPALLLPLIAAAQAADEQTMVVTAAPTTVSELDTPAAVSVVNGDEMRQAAPRVNLSESLGAVPGLQVQNR
QNYAQDLQLSIRGFGSRSTYGVRGLRIYVDGIPATMPDGQGQTSNIDIGSVDTIEVLRGPFSALYGNSSGGVINVTSQTG
TQPPTVEASSYYGSFGTWHYGMKATGAVGDGSHAGDVDYTVSTNRFTTHGYRDHSGARKNLANARLGVRINDVSKLTLLL
NSVDIKANDAGGLTADEWRDNPRQSPRGDQYNTRKNTRQTQAGLRYERQLSAQDDLSVMMYAGERETTQFQSIPRAPQLK
PSHAGGVIDLTRHYQGIDTRLTHRGELLVPVTLTAGLDYENMSERRKGYENFVMVNGAPQYGEQGALRRNERNLMWNVDP
YLQTQWQLTDKLSLDAGVRYSSVWFDSNDYYITPGNGDDSGDASYHKWLPAGSLKYALTDAWNVYLSAGRGFETPTINEL
SYRSDNQSGLNFGLKPSTNDTVEIGSKTRIGNGLFTAALFQTNTDNEIVVDSSSGGRTSYKNAGKTRRQGMELGLDQQFG
ESWRLKAAWTWLDATYRTNVCDDASCNGNRIPGIARNMGYASFGYQPEQGWYAGSDIRYMSDIMANDENTAKAPSWTVVG
LTTGYKWSYGRMDMDLFGRIDNLFDREYVGSVIVNESNGRYYEPAPGRNYGIGLNLAWRFE

Specific function: Probable receptor, tonB-dependent [H]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787723, Length=701, Percent_Identity=78.0313837375178, Blast_Score=1169, Evalue=0.0,
Organism=Escherichia coli, GI1790743, Length=645, Percent_Identity=22.6356589147287, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI1788478, Length=162, Percent_Identity=33.3333333333333, Blast_Score=70, Evalue=5e-13,
Organism=Escherichia coli, GI1787024, Length=256, Percent_Identity=26.5625, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 77094; Mature: 77094

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILSVRHAALPALLLPLIAAAQAADEQTMVVTAAPTTVSELDTPAAVSVVNGDEMRQAA
CCEEECHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCCCCCEEEEECCHHHHHHC
PRVNLSESLGAVPGLQVQNRQNYAQDLQLSIRGFGSRSTYGVRGLRIYVDGIPATMPDGQ
CCCCCHHHHCCCCCCEECCCCCHHHHEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCC
GQTSNIDIGSVDTIEVLRGPFSALYGNSSGGVINVTSQTGTQPPTVEASSYYGSFGTWHY
CCCCEECCCCCCHHHHHHCCHHHHCCCCCCCEEEEECCCCCCCCCEECCCCCCCCCEEEC
GMKATGAVGDGSHAGDVDYTVSTNRFTTHGYRDHSGARKNLANARLGVRINDVSKLTLLL
CCEEECCCCCCCCCCCEEEEEECCCEEECCCCCCCCHHHHHCCCEEEEEECCCCEEEEEE
NSVDIKANDAGGLTADEWRDNPRQSPRGDQYNTRKNTRQTQAGLRYERQLSAQDDLSVMM
EECEEEECCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHCCCCCCCEEEE
YAGERETTQFQSIPRAPQLKPSHAGGVIDLTRHYQGIDTRLTHRGELLVPVTLTAGLDYE
EECCCCCHHHHCCCCCCCCCCCCCCCEEEEHHHHCCCCCEEECCCCEEEEEEEEECCCHH
NMSERRKGYENFVMVNGAPQYGEQGALRRNERNLMWNVDPYLQTQWQLTDKLSLDAGVRY
HHHHHHCCCCCEEEEECCCCCCCCCCCEECCCCEEEECCHHHCEEEEEEEEEECCCCCEE
SSVWFDSNDYYITPGNGDDSGDASYHKWLPAGSLKYALTDAWNVYLSAGRGFETPTINEL
EEEEECCCCEEEECCCCCCCCCCCHHHCCCCCCEEEEEECCEEEEEECCCCCCCCCCCCC
SYRSDNQSGLNFGLKPSTNDTVEIGSKTRIGNGLFTAALFQTNTDNEIVVDSSSGGRTSY
CCCCCCCCCCEECCCCCCCCEEEECCCEECCCCEEEEEEEECCCCCEEEEECCCCCCCCC
KNAGKTRRQGMELGLDQQFGESWRLKAAWTWLDATYRTNVCDDASCNGNRIPGIARNMGY
CCCCHHHHHHHHCCCCHHCCCCEEEEEEEEEEECCEECCCCCCCCCCCCCCCCHHHHCCC
ASFGYQPEQGWYAGSDIRYMSDIMANDENTAKAPSWTVVGLTTGYKWSYGRMDMDLFGRI
HHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCCEEECCCCCHHHHHHH
DNLFDREYVGSVIVNESNGRYYEPAPGRNYGIGLNLAWRFE
HHHHHHHHCCEEEEECCCCCEECCCCCCCCEEEEEEEEEEC
>Mature Secondary Structure
MKILSVRHAALPALLLPLIAAAQAADEQTMVVTAAPTTVSELDTPAAVSVVNGDEMRQAA
CCEEECHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCCCCCEEEEECCHHHHHHC
PRVNLSESLGAVPGLQVQNRQNYAQDLQLSIRGFGSRSTYGVRGLRIYVDGIPATMPDGQ
CCCCCHHHHCCCCCCEECCCCCHHHHEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCC
GQTSNIDIGSVDTIEVLRGPFSALYGNSSGGVINVTSQTGTQPPTVEASSYYGSFGTWHY
CCCCEECCCCCCHHHHHHCCHHHHCCCCCCCEEEEECCCCCCCCCEECCCCCCCCCEEEC
GMKATGAVGDGSHAGDVDYTVSTNRFTTHGYRDHSGARKNLANARLGVRINDVSKLTLLL
CCEEECCCCCCCCCCCEEEEEECCCEEECCCCCCCCHHHHHCCCEEEEEECCCCEEEEEE
NSVDIKANDAGGLTADEWRDNPRQSPRGDQYNTRKNTRQTQAGLRYERQLSAQDDLSVMM
EECEEEECCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHCCCCCCCEEEE
YAGERETTQFQSIPRAPQLKPSHAGGVIDLTRHYQGIDTRLTHRGELLVPVTLTAGLDYE
EECCCCCHHHHCCCCCCCCCCCCCCCEEEEHHHHCCCCCEEECCCCEEEEEEEEECCCHH
NMSERRKGYENFVMVNGAPQYGEQGALRRNERNLMWNVDPYLQTQWQLTDKLSLDAGVRY
HHHHHHCCCCCEEEEECCCCCCCCCCCEECCCCEEEECCHHHCEEEEEEEEEECCCCCEE
SSVWFDSNDYYITPGNGDDSGDASYHKWLPAGSLKYALTDAWNVYLSAGRGFETPTINEL
EEEEECCCCEEEECCCCCCCCCCCHHHCCCCCCEEEEEECCEEEEEECCCCCCCCCCCCC
SYRSDNQSGLNFGLKPSTNDTVEIGSKTRIGNGLFTAALFQTNTDNEIVVDSSSGGRTSY
CCCCCCCCCCEECCCCCCCCEEEECCCEECCCCEEEEEEEECCCCCEEEEECCCCCCCCC
KNAGKTRRQGMELGLDQQFGESWRLKAAWTWLDATYRTNVCDDASCNGNRIPGIARNMGY
CCCCHHHHHHHHCCCCHHCCCCEEEEEEEEEEECCEECCCCCCCCCCCCCCCCHHHHCCC
ASFGYQPEQGWYAGSDIRYMSDIMANDENTAKAPSWTVVGLTTGYKWSYGRMDMDLFGRI
HHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCCEEECCCCCHHHHHHH
DNLFDREYVGSVIVNESNGRYYEPAPGRNYGIGLNLAWRFE
HHHHHHHHCCEEEEECCCCCEECCCCCCCCEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]