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The map label for this gene is ydaM [H]

Identifier: 238894827

GI number: 238894827

Start: 2708763

End: 2710142

Strand: Reverse

Name: ydaM [H]

Synonym: KP1_2841

Alternate gene names: 238894827

Gene position: 2710142-2708763 (Counterclockwise)

Preceding gene: 238894831

Following gene: 238894824

Centisome position: 51.64

GC content: 51.67

Gene sequence:

>1380_bases
TTGGCGCGCTCGCGCGTAATTGCGGTTTCTCGGTGTCTATTTTGCTTTCACTTTAAACCAGCGTTGGGGCTGCACAGCGT
TAAGTGCCGTTCCGCGCTGGCAGTGGGTCGGTTTGGGGCCTGTATGTTATTAAAAGAGCTGGCTGTTTTTGAGGTCTTAA
GCACCCCGATATGGGTAGTTCATCCTTTTAACGAAAGGGTGGTCTATGCCAATCAGGCTTCCCGGACATTGAGCGGCGAG
ATGTCGCTCAATGAGATGCGTAACGGTATTTATTCCACCTGTCCGGAAACGCAACTGCAGCACTACCTTCGCTATCTCGA
CACCATGAGCGAGATATTCGAAGTCTGGACGTTACCCACCGCCAATGGGTTGCAGTCGGTGTATTGCAAAACCACCCTGA
TTGATACCGAAGACTGTGGTTGCTTGCTGCTGTTTGAAGCCGTGAAGCTGCTGGCGCAAAATCAGTCGATTCATACCGGC
TCCCGCCGCTACCAGCGGCGTAACAATGGCTTTTTCGCTCGCTTTTTTATGACCAATACCGCGCCGATGCTGTTGATCGA
CCCTCATAAAGATGGCCGGATTGTCGATGCCAATATTGCCGCGCTACGTTTTTATCATTATTCCGATGAGGAAATGCGCA
CCAAACATACCTGGCAAATAAATACCCTGGGCCGGGACGTTATCCCCATTATGAATAATATTGCCAGTCTGCCTGGCGGT
CATAAACCGCTTAATTTTACGCATATTCTGGCTGACGGCTCGCTACGCCATGTCCAAACTTATGCCGGGCCGGTGGTGCT
GTATAATATTCGACTGATGCTATGCATCATTCACGATATCACCGAAGAAGTGCATCTGAAAAAAGAGCTGGAATTTTCCG
CCGCCCACGATCCGTTAACCGGCTTGCTTAATCGCCGGGAGTTTCACCATCTGGTTGAGGCGCCAACTTTTATCCCCCGG
GGTTATTGTCTGCTGTTAATCGATATCGATCATTTCAAGAGCATTAATGATATTCACGGCCATCAAAAAGGCGATGAGGT
CCTGCTGGTGCTCTCTCGTATTCTGGAAACGTCGGTCGACCGCGAAGATAAAATTTATCGCTGGGGTGGAGAAGAGTTTC
TGCTTTTTTTGCCCCATTCGCCGATCGGCCGCGCGCTGATACTGGCGGAGGGGATCCGCCAGGCGGTTAGCGAATACCAG
ACGCTGTCGGTGACCGTCAGCATCGGCGTGGCTGAACATCATGACGGCGAAACGGTTGATCAACTGTTTTCCCGCGTCGA
TAAAGCGCTGTATGCGGCAAAAAATGATGGGCGTAATCGGGTGACGCGCATGCCTTTTGACAGCCCTGAGCGACGGCGCA
GTAGAGATGGCGCCGCCTGA

Upstream 100 bases:

>100_bases
TTGAAATAAAATTATTATTAAAGGCAGCATCGCTTCTGTTGGTTAAACTGCGCGCAAAGTCACCCTCAGAGGGCTTTACT
GGGCGCATAACCGACTATAC

Downstream 100 bases:

>100_bases
ATAAGCCCCCGCCTGTAGTGGGTTAGCCTGCGCTAAGGTGGCAAACAAGGTATGGTGCGTTTTCTCGTTCTTTTCAGGAA
GTGGGACTGGCTGATGGGGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 459; Mature: 458

Protein sequence:

>459_residues
MARSRVIAVSRCLFCFHFKPALGLHSVKCRSALAVGRFGACMLLKELAVFEVLSTPIWVVHPFNERVVYANQASRTLSGE
MSLNEMRNGIYSTCPETQLQHYLRYLDTMSEIFEVWTLPTANGLQSVYCKTTLIDTEDCGCLLLFEAVKLLAQNQSIHTG
SRRYQRRNNGFFARFFMTNTAPMLLIDPHKDGRIVDANIAALRFYHYSDEEMRTKHTWQINTLGRDVIPIMNNIASLPGG
HKPLNFTHILADGSLRHVQTYAGPVVLYNIRLMLCIIHDITEEVHLKKELEFSAAHDPLTGLLNRREFHHLVEAPTFIPR
GYCLLLIDIDHFKSINDIHGHQKGDEVLLVLSRILETSVDREDKIYRWGGEEFLLFLPHSPIGRALILAEGIRQAVSEYQ
TLSVTVSIGVAEHHDGETVDQLFSRVDKALYAAKNDGRNRVTRMPFDSPERRRSRDGAA

Sequences:

>Translated_459_residues
MARSRVIAVSRCLFCFHFKPALGLHSVKCRSALAVGRFGACMLLKELAVFEVLSTPIWVVHPFNERVVYANQASRTLSGE
MSLNEMRNGIYSTCPETQLQHYLRYLDTMSEIFEVWTLPTANGLQSVYCKTTLIDTEDCGCLLLFEAVKLLAQNQSIHTG
SRRYQRRNNGFFARFFMTNTAPMLLIDPHKDGRIVDANIAALRFYHYSDEEMRTKHTWQINTLGRDVIPIMNNIASLPGG
HKPLNFTHILADGSLRHVQTYAGPVVLYNIRLMLCIIHDITEEVHLKKELEFSAAHDPLTGLLNRREFHHLVEAPTFIPR
GYCLLLIDIDHFKSINDIHGHQKGDEVLLVLSRILETSVDREDKIYRWGGEEFLLFLPHSPIGRALILAEGIRQAVSEYQ
TLSVTVSIGVAEHHDGETVDQLFSRVDKALYAAKNDGRNRVTRMPFDSPERRRSRDGAA
>Mature_458_residues
ARSRVIAVSRCLFCFHFKPALGLHSVKCRSALAVGRFGACMLLKELAVFEVLSTPIWVVHPFNERVVYANQASRTLSGEM
SLNEMRNGIYSTCPETQLQHYLRYLDTMSEIFEVWTLPTANGLQSVYCKTTLIDTEDCGCLLLFEAVKLLAQNQSIHTGS
RRYQRRNNGFFARFFMTNTAPMLLIDPHKDGRIVDANIAALRFYHYSDEEMRTKHTWQINTLGRDVIPIMNNIASLPGGH
KPLNFTHILADGSLRHVQTYAGPVVLYNIRLMLCIIHDITEEVHLKKELEFSAAHDPLTGLLNRREFHHLVEAPTFIPRG
YCLLLIDIDHFKSINDIHGHQKGDEVLLVLSRILETSVDREDKIYRWGGEEFLLFLPHSPIGRALILAEGIRQAVSEYQT
LSVTVSIGVAEHHDGETVDQLFSRVDKALYAAKNDGRNRVTRMPFDSPERRRSRDGAA

Specific function: Unknown

COG id: COG2202

COG function: function code T; FOG: PAS/PAC domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=407, Percent_Identity=49.6314496314496, Blast_Score=419, Evalue=1e-118,
Organism=Escherichia coli, GI1787262, Length=160, Percent_Identity=37.5, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI1788381, Length=180, Percent_Identity=33.8888888888889, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI1787802, Length=172, Percent_Identity=34.3023255813954, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1788085, Length=177, Percent_Identity=34.4632768361582, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI87082007, Length=169, Percent_Identity=35.5029585798817, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI145693134, Length=194, Percent_Identity=32.9896907216495, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1786584, Length=186, Percent_Identity=30.1075268817204, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787056, Length=153, Percent_Identity=35.2941176470588, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1787816, Length=197, Percent_Identity=31.4720812182741, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1787541, Length=179, Percent_Identity=27.9329608938547, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1788956, Length=164, Percent_Identity=31.7073170731707, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI87081974, Length=231, Percent_Identity=24.6753246753247, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 52215; Mature: 52084

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARSRVIAVSRCLFCFHFKPALGLHSVKCRSALAVGRFGACMLLKELAVFEVLSTPIWVV
CCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
HPFNERVVYANQASRTLSGEMSLNEMRNGIYSTCPETQLQHYLRYLDTMSEIFEVWTLPT
ECCCCEEEEECCCCCHHCCCCCHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
ANGLQSVYCKTTLIDTEDCGCLLLFEAVKLLAQNQSIHTGSRRYQRRNNGFFARFFMTNT
CCCCHHEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCEEEEEEECCC
APMLLIDPHKDGRIVDANIAALRFYHYSDEEMRTKHTWQINTLGRDVIPIMNNIASLPGG
CCEEEECCCCCCEEEECCEEEEEEEECCCHHHCCCCEEEEECCCCHHHHHHHHHHHCCCC
HKPLNFTHILADGSLRHVQTYAGPVVLYNIRLMLCIIHDITEEVHLKKELEFSAAHDPLT
CCCCCEEEEEECCCHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
GLLNRREFHHLVEAPTFIPRGYCLLLIDIDHFKSINDIHGHQKGDEVLLVLSRILETSVD
HHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHCCHHHHCCCCCCHHHHHHHHHHHHHCCC
REDKIYRWGGEEFLLFLPHSPIGRALILAEGIRQAVSEYQTLSVTVSIGVAEHHDGETVD
CCCCEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHCCEEEEEEEEEEEEECCCCHHHH
QLFSRVDKALYAAKNDGRNRVTRMPFDSPERRRSRDGAA
HHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHCCCCCC
>Mature Secondary Structure 
ARSRVIAVSRCLFCFHFKPALGLHSVKCRSALAVGRFGACMLLKELAVFEVLSTPIWVV
CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
HPFNERVVYANQASRTLSGEMSLNEMRNGIYSTCPETQLQHYLRYLDTMSEIFEVWTLPT
ECCCCEEEEECCCCCHHCCCCCHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
ANGLQSVYCKTTLIDTEDCGCLLLFEAVKLLAQNQSIHTGSRRYQRRNNGFFARFFMTNT
CCCCHHEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCEEEEEEECCC
APMLLIDPHKDGRIVDANIAALRFYHYSDEEMRTKHTWQINTLGRDVIPIMNNIASLPGG
CCEEEECCCCCCEEEECCEEEEEEEECCCHHHCCCCEEEEECCCCHHHHHHHHHHHCCCC
HKPLNFTHILADGSLRHVQTYAGPVVLYNIRLMLCIIHDITEEVHLKKELEFSAAHDPLT
CCCCCEEEEEECCCHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
GLLNRREFHHLVEAPTFIPRGYCLLLIDIDHFKSINDIHGHQKGDEVLLVLSRILETSVD
HHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHCCHHHHCCCCCCHHHHHHHHHHHHHCCC
REDKIYRWGGEEFLLFLPHSPIGRALILAEGIRQAVSEYQTLSVTVSIGVAEHHDGETVD
CCCCEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHCCEEEEEEEEEEEEECCCCHHHH
QLFSRVDKALYAAKNDGRNRVTRMPFDSPERRRSRDGAA
HHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]