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The map label for this gene is yncC [C]

Identifier: 238894824

GI number: 238894824

Start: 2704894

End: 2705610

Strand: Reverse

Name: yncC [C]

Synonym: KP1_2838

Alternate gene names: 238894824

Gene position: 2705610-2704894 (Counterclockwise)

Preceding gene: 238894827

Following gene: 238894823

Centisome position: 51.55

GC content: 63.46

Gene sequence:

>717_bases
ATGAATAATGAACATCGTCTCCAGGCCGCGCCAGCGCTGCAGGACAAGGACGAAAGCATTTACCAGGCGCTGATGACGGC
TATCGTCGAACATCAGCTGCCGCCGGGCAGCAAACTGCCGGAAGAGGCGCTGGCGGAGGTGTTCGCCGTGAGCCGCACCG
GCATCAGAAAGGTGCTGCAACGACTCGCCGCTGTGCAACTGGTCACGTTGACGCCCAAACGTGGTGCACACGTCGCCAGC
CCGAGCGTGGAAGAGTCCCAGGCGATCTTTCGCACCCGGGCGCTGCTCGAGGTCGCCAATCTCCCCGATGTAATCGCGCG
CTGTCAGCCGCCGCATCTGGCGGCGCTGGAGAACATTATTCAGCGTGAACAGCAGGCCCATGCGGCGCACGACGGCCCGG
CGGCGATCCGCCACTCCGCTGACTTTCATATTCAGCTGCAGGCTATCTCCGGCAACCCGGTGCTCACCGAGATGGTGACC
CGCCTCAGCCAGCGCTCCTCTTTAGTGATTGCCGCCTGGGGCGCCCCCTGGCGACAGGGCTGCCGTTGCGACGATCACCA
GCAGCTGGTCGGTTTGCTGCGGGATAAAGCCCTGCAGCCGCTCAGCGAGGCGCTGATGCACCATTTTGATCATATTGTCG
CCAGCCTGTGCTTCGAGCGCGATGGCGTCAGCCTGCCCGATTTTTCCCGGCTGTTCGCCGGCCACAAGGAGTCGTGA

Upstream 100 bases:

>100_bases
AGGCTATTGCAGGATCCAGGCCAGAATGATGAATCTTGTATACAAAAAATAAATTTTATGTATACGATCTGCTATCGATA
AGTGAAACCGGAGTGGGTTA

Downstream 100 bases:

>100_bases
TGTCTTCCGTTCGGATACAAGTGATTAACCCCAACACCAGCCTGGCGATGACCGAAACGATAGGCGCCGCCGCGCGTGCG
GTCGCTGCGCCGGGCACCGA

Product: hypothetical transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; GntR-Family Transcriptional Regulator; Transcriptional Regulator Protein GntR Family; Transcriptional Regulator Gntr Family; Transcriptional Regulator Protein; GntR Family Regulatory Protein; GntR Family Transcription Regulator Protein; GntR Domain-Containing Protein; Transcription Regulator HTH GntR; Bacterial Regulatory Protein; Transcription Regulator Protein; FCD Domain Protein; Transcriptional Regulator GntR Family Protein; GntR-Type Regulator; TRANSCRIPTIONal REGULATOR GntR Family

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MNNEHRLQAAPALQDKDESIYQALMTAIVEHQLPPGSKLPEEALAEVFAVSRTGIRKVLQRLAAVQLVTLTPKRGAHVAS
PSVEESQAIFRTRALLEVANLPDVIARCQPPHLAALENIIQREQQAHAAHDGPAAIRHSADFHIQLQAISGNPVLTEMVT
RLSQRSSLVIAAWGAPWRQGCRCDDHQQLVGLLRDKALQPLSEALMHHFDHIVASLCFERDGVSLPDFSRLFAGHKES

Sequences:

>Translated_238_residues
MNNEHRLQAAPALQDKDESIYQALMTAIVEHQLPPGSKLPEEALAEVFAVSRTGIRKVLQRLAAVQLVTLTPKRGAHVAS
PSVEESQAIFRTRALLEVANLPDVIARCQPPHLAALENIIQREQQAHAAHDGPAAIRHSADFHIQLQAISGNPVLTEMVT
RLSQRSSLVIAAWGAPWRQGCRCDDHQQLVGLLRDKALQPLSEALMHHFDHIVASLCFERDGVSLPDFSRLFAGHKES
>Mature_238_residues
MNNEHRLQAAPALQDKDESIYQALMTAIVEHQLPPGSKLPEEALAEVFAVSRTGIRKVLQRLAAVQLVTLTPKRGAHVAS
PSVEESQAIFRTRALLEVANLPDVIARCQPPHLAALENIIQREQQAHAAHDGPAAIRHSADFHIQLQAISGNPVLTEMVT
RLSQRSSLVIAAWGAPWRQGCRCDDHQQLVGLLRDKALQPLSEALMHHFDHIVASLCFERDGVSLPDFSRLFAGHKES

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26226; Mature: 26226

Theoretical pI: Translated: 7.00; Mature: 7.00

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNEHRLQAAPALQDKDESIYQALMTAIVEHQLPPGSKLPEEALAEVFAVSRTGIRKVLQ
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
RLAAVQLVTLTPKRGAHVASPSVEESQAIFRTRALLEVANLPDVIARCQPPHLAALENII
HHHHHHHHEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHH
QREQQAHAAHDGPAAIRHSADFHIQLQAISGNPVLTEMVTRLSQRSSLVIAAWGAPWRQG
HHHHHHHHCCCCCHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCHHCC
CRCDDHQQLVGLLRDKALQPLSEALMHHFDHIVASLCFERDGVSLPDFSRLFAGHKES
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCC
>Mature Secondary Structure
MNNEHRLQAAPALQDKDESIYQALMTAIVEHQLPPGSKLPEEALAEVFAVSRTGIRKVLQ
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
RLAAVQLVTLTPKRGAHVASPSVEESQAIFRTRALLEVANLPDVIARCQPPHLAALENII
HHHHHHHHEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHH
QREQQAHAAHDGPAAIRHSADFHIQLQAISGNPVLTEMVTRLSQRSSLVIAAWGAPWRQG
HHHHHHHHCCCCCHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCHHCC
CRCDDHQQLVGLLRDKALQPLSEALMHHFDHIVASLCFERDGVSLPDFSRLFAGHKES
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA