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The map label for this gene is yhjC [H]

Identifier: 238894795

GI number: 238894795

Start: 2677310

End: 2678200

Strand: Reverse

Name: yhjC [H]

Synonym: KP1_2806

Alternate gene names: 238894795

Gene position: 2678200-2677310 (Counterclockwise)

Preceding gene: 238894797

Following gene: 238894794

Centisome position: 51.03

GC content: 60.94

Gene sequence:

>891_bases
ATGAATCTGTTTGAAAATATTAAAATTTTTATTGAAATCGTCGATGCCGGCAGCTTTGCCCAGGCGGCGGAAAATTTGCA
GATCCACCGACCGGCGGTGACCAAAGCACTGCAGCAGCTGGAGCAGGAGAGCGGGGTCCGGCTGCTGCAGCGCACCACCC
GGCGTCTGTATCTTACGCCGGAGGGGGAAGAGTTTTATCGTCGCAGCAAACCGTTGCTCTCCCAGGCCGACGATCTGCTG
GAGTCGTTCGCGCCGGACCGGCCGATCCGCGGTCAGCTGCGCGTTGATATGCCGATCGCCTTTGCCCGGCTGCTGGTGAT
CCCGCATCTGCCGGATTTTTATCAGGCCCATCCGGAGGTGGAGATTGTCCTCAGCAGCTCCGACGTACGCCGGGATATGC
TGCGCGATGGTCTGGATTGCCTGCTGCGGGTGGGGGATCTTGAGGATGGCGACTATGTGGCGCGTTCACTGGGGGAGGTG
GCGTTAACCACCTGCGCCAGTCCGGGCTATCTGGCGCGCTATGGGGCGCCCGCGACGCTGGAGGACCTGCAGTCGCATCT
GGCGGTGAACTGGGTGAACAGCAGCAGCCGGCAGATTATGCCCTGGCGATTCCAGACCCCGGAGGGCATCAGGCAGATCG
CCATTCCCGGTAAACTGGTGCTGGACAACTCTGAAGTCTTTACTGCTGCCGGGCTGGCGGGGCTGGGGATGCTGCAGGGG
ATGCGTTTCTTTTTGCAACCTTATATCGACAGCGGGCAACTGGTGGAAGTTTTGCCGGACTTTCCGGCGCCGCGTCGACC
GTTGTCGCTGCTCTATCCGCACCGGCATCTCTCGCATAAGGTTCGGGTCTTTGCCGACTGGCTGCAGGGGCTGGTAGCGA
CCCTGGACTGA

Upstream 100 bases:

>100_bases
GTCTTTATTGTTTTAAAAAATGAGCAAAAACTTTCATCACTATTATTAAATTAGTAATAATGTGAACTGATGAAGAGGTG
GGAGGCGGGCCATCATGCAA

Downstream 100 bases:

>100_bases
CAATCGGCGCTGTCGCCTTGACTCTATCGGCTGAGCGTTTATATATAAAATGTGAATGCTATTAATGCAACGAATCACAA
AGCTGGATAACGACTTAACC

Product: putative LysR-family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MNLFENIKIFIEIVDAGSFAQAAENLQIHRPAVTKALQQLEQESGVRLLQRTTRRLYLTPEGEEFYRRSKPLLSQADDLL
ESFAPDRPIRGQLRVDMPIAFARLLVIPHLPDFYQAHPEVEIVLSSSDVRRDMLRDGLDCLLRVGDLEDGDYVARSLGEV
ALTTCASPGYLARYGAPATLEDLQSHLAVNWVNSSSRQIMPWRFQTPEGIRQIAIPGKLVLDNSEVFTAAGLAGLGMLQG
MRFFLQPYIDSGQLVEVLPDFPAPRRPLSLLYPHRHLSHKVRVFADWLQGLVATLD

Sequences:

>Translated_296_residues
MNLFENIKIFIEIVDAGSFAQAAENLQIHRPAVTKALQQLEQESGVRLLQRTTRRLYLTPEGEEFYRRSKPLLSQADDLL
ESFAPDRPIRGQLRVDMPIAFARLLVIPHLPDFYQAHPEVEIVLSSSDVRRDMLRDGLDCLLRVGDLEDGDYVARSLGEV
ALTTCASPGYLARYGAPATLEDLQSHLAVNWVNSSSRQIMPWRFQTPEGIRQIAIPGKLVLDNSEVFTAAGLAGLGMLQG
MRFFLQPYIDSGQLVEVLPDFPAPRRPLSLLYPHRHLSHKVRVFADWLQGLVATLD
>Mature_296_residues
MNLFENIKIFIEIVDAGSFAQAAENLQIHRPAVTKALQQLEQESGVRLLQRTTRRLYLTPEGEEFYRRSKPLLSQADDLL
ESFAPDRPIRGQLRVDMPIAFARLLVIPHLPDFYQAHPEVEIVLSSSDVRRDMLRDGLDCLLRVGDLEDGDYVARSLGEV
ALTTCASPGYLARYGAPATLEDLQSHLAVNWVNSSSRQIMPWRFQTPEGIRQIAIPGKLVLDNSEVFTAAGLAGLGMLQG
MRFFLQPYIDSGQLVEVLPDFPAPRRPLSLLYPHRHLSHKVRVFADWLQGLVATLD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=294, Percent_Identity=38.0952380952381, Blast_Score=209, Evalue=1e-55,
Organism=Escherichia coli, GI1786401, Length=293, Percent_Identity=32.0819112627986, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI1789639, Length=291, Percent_Identity=29.2096219931272, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1787128, Length=292, Percent_Identity=27.7397260273973, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI87081978, Length=292, Percent_Identity=29.4520547945205, Blast_Score=124, Evalue=9e-30,
Organism=Escherichia coli, GI1789440, Length=290, Percent_Identity=26.2068965517241, Blast_Score=118, Evalue=6e-28,
Organism=Escherichia coli, GI1787589, Length=288, Percent_Identity=26.0416666666667, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1789173, Length=288, Percent_Identity=25.3472222222222, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1788481, Length=293, Percent_Identity=27.3037542662116, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786448, Length=283, Percent_Identity=28.2685512367491, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788706, Length=288, Percent_Identity=22.9166666666667, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87082132, Length=267, Percent_Identity=26.9662921348315, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786713, Length=283, Percent_Identity=27.5618374558304, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI157672245, Length=143, Percent_Identity=31.4685314685315, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1790011, Length=272, Percent_Identity=24.6323529411765, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33297; Mature: 33297

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLFENIKIFIEIVDAGSFAQAAENLQIHRPAVTKALQQLEQESGVRLLQRTTRRLYLTP
CCHHHCEEEEEEEECCCCHHHHHHCCEEECHHHHHHHHHHHHHHHHHHHHHHHHEEEECC
EGEEFYRRSKPLLSQADDLLESFAPDRPIRGQLRVDMPIAFARLLVIPHLPDFYQAHPEV
CCHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCEEECHHHHHHHHHHHCCCCHHHHCCCCE
EIVLSSSDVRRDMLRDGLDCLLRVGDLEDGDYVARSLGEVALTTCASPGYLARYGAPATL
EEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCH
EDLQSHLAVNWVNSSSRQIMPWRFQTPEGIRQIAIPGKLVLDNSEVFTAAGLAGLGMLQG
HHHHHHHEEEEECCCCCCCCCEEECCCHHHHEEECCCEEEECCCCHHHHHHHHHHHHHHH
MRFFLQPYIDSGQLVEVLPDFPAPRRPLSLLYPHRHLSHKVRVFADWLQGLVATLD
HHHHHHHCCCCCCEEEECCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNLFENIKIFIEIVDAGSFAQAAENLQIHRPAVTKALQQLEQESGVRLLQRTTRRLYLTP
CCHHHCEEEEEEEECCCCHHHHHHCCEEECHHHHHHHHHHHHHHHHHHHHHHHHEEEECC
EGEEFYRRSKPLLSQADDLLESFAPDRPIRGQLRVDMPIAFARLLVIPHLPDFYQAHPEV
CCHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCEEECHHHHHHHHHHHCCCCHHHHCCCCE
EIVLSSSDVRRDMLRDGLDCLLRVGDLEDGDYVARSLGEVALTTCASPGYLARYGAPATL
EEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCH
EDLQSHLAVNWVNSSSRQIMPWRFQTPEGIRQIAIPGKLVLDNSEVFTAAGLAGLGMLQG
HHHHHHHEEEEECCCCCCCCCEEECCCHHHHEEECCCEEEECCCCHHHHHHHHHHHHHHH
MRFFLQPYIDSGQLVEVLPDFPAPRRPLSLLYPHRHLSHKVRVFADWLQGLVATLD
HHHHHHHCCCCCCEEEECCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]