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The map label for this gene is rbsB [H]

Identifier: 238894765

GI number: 238894765

Start: 2647145

End: 2648206

Strand: Reverse

Name: rbsB [H]

Synonym: KP1_2773

Alternate gene names: 238894765

Gene position: 2648206-2647145 (Counterclockwise)

Preceding gene: 238894773

Following gene: 238894763

Centisome position: 50.46

GC content: 52.92

Gene sequence:

>1062_bases
TTGTTCTGGCGATATAGACGATATTTGCCCGCCAAAAAAATAATCCTTCTGCGTTCGCATGCGGCGCGGAACTCTGCTGG
CTATCAACTATTCCCGACGAGGATACTGATGATGTTATTTCACACCGGAAAACTGCGTTTACTTACTGTCGCCACGACCA
TGCTGGCATCAATGAGTTTTATTTCTGCCGCCAGCGCTGCCGGTCCGACTTATGCGCTGGTACAAATCAACCAACAGGCG
CTGTTCTTTAATCTGATGAATAAAGGCGCACAGGATGCGGCCAAAGCCAGTGGCAAGGATTTAGTTATTTTTAACTCTAA
CGATAATCCCGTGGCGCAAAACGACGCGATAGAAAACTATATTCAGCAAGGCGTTAAAGGCATTCTGGTTGCTGCTATCG
ACGTTAACGGGATCATGCCAGCGGTTAAAGAAGCCGCCGCCGCAAACATTCCGGTGATTGCGATTGATGCCGTATTACCG
GCCGGGCCACAGGCAGCTCAGGTCGGCGTTGATAATATTGAAGGCGGCAGAATTATCGGTCAATACTTCGTGGACTACGT
GCAGAAAGAGATGGGCGGCCAGGCGCGACTGGGTATAGTCGGCGCGCTGAATTCGGCCATTCAGAACCAGCGGCAGAAAG
GGTTCGAAGAGACGCTGAAAAGCAATCCGAAGATTACTATCGCTAACGTGGTCGACGGGCAGAATGTGCAGGATAAAGCG
ATGACCGCGGCGGAAAACCTGATCACCGGTAATCCGGATCTGACAGCGATTTATGCCACCGGCGAACCCGCGCTGCTCGG
CGCTATCGCCGCCGTAGAAAACCAGGGGCGGCAGAAGGATATTAAAGTCTTTGGCTGGGATCTGACGGCGAAGGCGATTT
CCGGTATTGACGGCGGCTACGTCACCGCCGTACTGCAGCAGGACCCGGAAAAGATGGGCGCCGAAGCCCTGAATGCGCTG
AACAGCATCACGTCGGGTAAAACCGTGCCGAAAACCATTCTGGTTCCGGCGACGGTGGTAACCAAAGCGAACGTCGATTC
ATACCGTCCGCTGTTTAAGTAG

Upstream 100 bases:

>100_bases
GGAAGTCATTCCCAACCCCGTTTAAGTTATTCCAGTCGCGCACCGACACGGACCGGTTGCCGGGATGACATTAAGCAGGT
ATCCGCCGAACGTTCAATGA

Downstream 100 bases:

>100_bases
GTCAGCGCGCCCCGTCCGTGGTTAACAGGGCGGCGAGCTCACGGCTGCCGGGAAACGCGCTGACCGTCCCCCGGCGGCTA
ACCGTAATGGCGGCAGCGCG

Product: putative ABC transport system nucleotide binding/ATPase component

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 353; Mature: 353

Protein sequence:

>353_residues
MFWRYRRYLPAKKIILLRSHAARNSAGYQLFPTRILMMLFHTGKLRLLTVATTMLASMSFISAASAAGPTYALVQINQQA
LFFNLMNKGAQDAAKASGKDLVIFNSNDNPVAQNDAIENYIQQGVKGILVAAIDVNGIMPAVKEAAAANIPVIAIDAVLP
AGPQAAQVGVDNIEGGRIIGQYFVDYVQKEMGGQARLGIVGALNSAIQNQRQKGFEETLKSNPKITIANVVDGQNVQDKA
MTAAENLITGNPDLTAIYATGEPALLGAIAAVENQGRQKDIKVFGWDLTAKAISGIDGGYVTAVLQQDPEKMGAEALNAL
NSITSGKTVPKTILVPATVVTKANVDSYRPLFK

Sequences:

>Translated_353_residues
MFWRYRRYLPAKKIILLRSHAARNSAGYQLFPTRILMMLFHTGKLRLLTVATTMLASMSFISAASAAGPTYALVQINQQA
LFFNLMNKGAQDAAKASGKDLVIFNSNDNPVAQNDAIENYIQQGVKGILVAAIDVNGIMPAVKEAAAANIPVIAIDAVLP
AGPQAAQVGVDNIEGGRIIGQYFVDYVQKEMGGQARLGIVGALNSAIQNQRQKGFEETLKSNPKITIANVVDGQNVQDKA
MTAAENLITGNPDLTAIYATGEPALLGAIAAVENQGRQKDIKVFGWDLTAKAISGIDGGYVTAVLQQDPEKMGAEALNAL
NSITSGKTVPKTILVPATVVTKANVDSYRPLFK
>Mature_353_residues
MFWRYRRYLPAKKIILLRSHAARNSAGYQLFPTRILMMLFHTGKLRLLTVATTMLASMSFISAASAAGPTYALVQINQQA
LFFNLMNKGAQDAAKASGKDLVIFNSNDNPVAQNDAIENYIQQGVKGILVAAIDVNGIMPAVKEAAAANIPVIAIDAVLP
AGPQAAQVGVDNIEGGRIIGQYFVDYVQKEMGGQARLGIVGALNSAIQNQRQKGFEETLKSNPKITIANVVDGQNVQDKA
MTAAENLITGNPDLTAIYATGEPALLGAIAAVENQGRQKDIKVFGWDLTAKAISGIDGGYVTAVLQQDPEKMGAEALNAL
NSITSGKTVPKTILVPATVVTKANVDSYRPLFK

Specific function: Involved in the high-affinity D-ribose membrane transport system [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=303, Percent_Identity=27.7227722772277, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1788898, Length=320, Percent_Identity=30.625, Blast_Score=101, Evalue=9e-23,
Organism=Escherichia coli, GI1790674, Length=254, Percent_Identity=26.3779527559055, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1790526, Length=282, Percent_Identity=27.6595744680851, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 37615; Mature: 37615

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFWRYRRYLPAKKIILLRSHAARNSAGYQLFPTRILMMLFHTGKLRLLTVATTMLASMSF
CCCCHHHHCCHHHEEEEECCCCCCCCCCEEHHHHHHHHHHHCCCEEEHHHHHHHHHHHHH
ISAASAAGPTYALVQINQQALFFNLMNKGAQDAAKASGKDLVIFNSNDNPVAQNDAIENY
HHHHCCCCCEEEEEEECCHHHHHHHHHCCHHHHHHCCCCEEEEECCCCCCCCCHHHHHHH
IQQGVKGILVAAIDVNGIMPAVKEAAAANIPVIAIDAVLPAGPQAAQVGVDNIEGGRIIG
HHHCCCEEEEEEEECCCCHHHHHHHHHCCCCEEEEEEECCCCCCHHHCCCCCCCCCEEHH
QYFVDYVQKEMGGQARLGIVGALNSAIQNQRQKGFEETLKSNPKITIANVVDGQNVQDKA
HHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH
MTAAENLITGNPDLTAIYATGEPALLGAIAAVENQGRQKDIKVFGWDLTAKAISGIDGGY
HHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEEEEECHHHHHHCCCCCCE
VTAVLQQDPEKMGAEALNALNSITSGKTVPKTILVPATVVTKANVDSYRPLFK
EEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEECEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MFWRYRRYLPAKKIILLRSHAARNSAGYQLFPTRILMMLFHTGKLRLLTVATTMLASMSF
CCCCHHHHCCHHHEEEEECCCCCCCCCCEEHHHHHHHHHHHCCCEEEHHHHHHHHHHHHH
ISAASAAGPTYALVQINQQALFFNLMNKGAQDAAKASGKDLVIFNSNDNPVAQNDAIENY
HHHHCCCCCEEEEEEECCHHHHHHHHHCCHHHHHHCCCCEEEEECCCCCCCCCHHHHHHH
IQQGVKGILVAAIDVNGIMPAVKEAAAANIPVIAIDAVLPAGPQAAQVGVDNIEGGRIIG
HHHCCCEEEEEEEECCCCHHHHHHHHHCCCCEEEEEEECCCCCCHHHCCCCCCCCCEEHH
QYFVDYVQKEMGGQARLGIVGALNSAIQNQRQKGFEETLKSNPKITIANVVDGQNVQDKA
HHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH
MTAAENLITGNPDLTAIYATGEPALLGAIAAVENQGRQKDIKVFGWDLTAKAISGIDGGY
HHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEEEEECHHHHHHCCCCCCE
VTAVLQQDPEKMGAEALNALNSITSGKTVPKTILVPATVVTKANVDSYRPLFK
EEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEECEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377; 7921236 [H]