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The map label for this gene is fucR [H]

Identifier: 238894746

GI number: 238894746

Start: 2629396

End: 2630196

Strand: Reverse

Name: fucR [H]

Synonym: KP1_2753

Alternate gene names: 238894746

Gene position: 2630196-2629396 (Counterclockwise)

Preceding gene: 238894747

Following gene: 238894745

Centisome position: 50.11

GC content: 59.93

Gene sequence:

>801_bases
ATGTTGCCGCTGGAACGTCATCGTTTGATTGTTGAACTGCTGGGCCAACACGGCGTCATGCGGGTGAATGAGATTGCGCA
AGCGACTCGGGTCTCCAGGGAAACGATTCGCCGCGATCTGAGCGAGCTGGAACGCAAAGGGATCTTAACCCGAAGCCACG
GTGGAGCGCTGGCGGCGGAAAATCCGCTGCCGGCGACCCGGGCGGCGGCATCCGCCCTGCCAGTTGAAGATAGCCAGGGA
AGCTTTCAGCACAGAACGCTGCTGCACAGCGAAGGCAAAATGCGCGTGGCCCGTAAAGCACTGCAGTTTCTCCAACCGGG
ACAGACCATTGTCCTGGACGGGAGTAGCACCAGCTGGTTTTTGGCCCGGCAGATGCCGGAGATGGCGTTGACGGTGATTA
CGCCCTCCATTCGCATCTTACAAACTCTGATGAGCCGACGCTCGTTGCATCTCGTCGGGCTGGGGGGCGATTTCTCCCCG
ACCGAAGAGTCGTTCTTCGGGGAAACCGCCTCACGAACGCTACGCGAATATGCCATTGATACGCTCTTTTTCTCCTGCCA
GGGGCTGGAGCGCGATAGCGGCTTGTATGCGGGTACGCAAGCCCACGCCGCCCTGCTGAAACAGATGCTGCTGGCCGCCC
GTCAGACTGTGGCTTTGGTCGACGGCAGCAAGCTGGGGCGAACAGGCGTCGCGCGTATCGGCGGACTGGGCGAGCTGGAC
TGTCTGGTGACTGAAAGGTTTGTCGATCCGCTGCTGGAAAAAGAGATGACCTGGCATAACGTCAGCCTGCAAATAGCCTG
A

Upstream 100 bases:

>100_bases
GTGTTCGGCTGCGGATAGCTTGCCTTCGTGGGACATTCCCGAGGTCTCAACGCTCTGCGCAAGGGAAAGGTAATCTGATT
ATGTACTTCAGGAGAGAGCT

Downstream 100 bases:

>100_bases
GTACGCCGTCATGACGTGACGGTTAATACGCGCAATGTCGAAACGCTGCTTACCGCGGCAGGGCCAGACTTTGCCTGAAT
TCAGCCACCACCGGAATAAA

Product: putative DeoR family regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MLPLERHRLIVELLGQHGVMRVNEIAQATRVSRETIRRDLSELERKGILTRSHGGALAAENPLPATRAAASALPVEDSQG
SFQHRTLLHSEGKMRVARKALQFLQPGQTIVLDGSSTSWFLARQMPEMALTVITPSIRILQTLMSRRSLHLVGLGGDFSP
TEESFFGETASRTLREYAIDTLFFSCQGLERDSGLYAGTQAHAALLKQMLLAARQTVALVDGSKLGRTGVARIGGLGELD
CLVTERFVDPLLEKEMTWHNVSLQIA

Sequences:

>Translated_266_residues
MLPLERHRLIVELLGQHGVMRVNEIAQATRVSRETIRRDLSELERKGILTRSHGGALAAENPLPATRAAASALPVEDSQG
SFQHRTLLHSEGKMRVARKALQFLQPGQTIVLDGSSTSWFLARQMPEMALTVITPSIRILQTLMSRRSLHLVGLGGDFSP
TEESFFGETASRTLREYAIDTLFFSCQGLERDSGLYAGTQAHAALLKQMLLAARQTVALVDGSKLGRTGVARIGGLGELD
CLVTERFVDPLLEKEMTWHNVSLQIA
>Mature_266_residues
MLPLERHRLIVELLGQHGVMRVNEIAQATRVSRETIRRDLSELERKGILTRSHGGALAAENPLPATRAAASALPVEDSQG
SFQHRTLLHSEGKMRVARKALQFLQPGQTIVLDGSSTSWFLARQMPEMALTVITPSIRILQTLMSRRSLHLVGLGGDFSP
TEESFFGETASRTLREYAIDTLFFSCQGLERDSGLYAGTQAHAALLKQMLLAARQTVALVDGSKLGRTGVARIGGLGELD
CLVTERFVDPLLEKEMTWHNVSLQIA

Specific function: Transcriptional activator of the fuc operon [H]

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789170, Length=240, Percent_Identity=32.9166666666667, Blast_Score=137, Evalue=9e-34,
Organism=Escherichia coli, GI1789519, Length=242, Percent_Identity=26.8595041322314, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1789059, Length=270, Percent_Identity=27.4074074074074, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1788069, Length=247, Percent_Identity=28.3400809716599, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1789829, Length=267, Percent_Identity=24.3445692883895, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI226510968, Length=267, Percent_Identity=26.9662921348315, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1790635, Length=263, Percent_Identity=26.2357414448669, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI87082344, Length=243, Percent_Identity=25.1028806584362, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787540, Length=242, Percent_Identity=25.6198347107438, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1787063, Length=216, Percent_Identity=25.9259259259259, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 29251; Mature: 29251

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPLERHRLIVELLGQHGVMRVNEIAQATRVSRETIRRDLSELERKGILTRSHGGALAAE
CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCC
NPLPATRAAASALPVEDSQGSFQHRTLLHSEGKMRVARKALQFLQPGQTIVLDGSSTSWF
CCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCH
LARQMPEMALTVITPSIRILQTLMSRRSLHLVGLGGDFSPTEESFFGETASRTLREYAID
HHHHCHHHHHHHHCCCHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
TLFFSCQGLERDSGLYAGTQAHAALLKQMLLAARQTVALVDGSKLGRTGVARIGGLGELD
HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHCCCCHHH
CLVTERFVDPLLEKEMTWHNVSLQIA
HHHHHHHHHHHHHHCCCEECEEEEEC
>Mature Secondary Structure
MLPLERHRLIVELLGQHGVMRVNEIAQATRVSRETIRRDLSELERKGILTRSHGGALAAE
CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCC
NPLPATRAAASALPVEDSQGSFQHRTLLHSEGKMRVARKALQFLQPGQTIVLDGSSTSWF
CCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCH
LARQMPEMALTVITPSIRILQTLMSRRSLHLVGLGGDFSPTEESFFGETASRTLREYAID
HHHHCHHHHHHHHCCCHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
TLFFSCQGLERDSGLYAGTQAHAALLKQMLLAARQTVALVDGSKLGRTGVARIGGLGELD
HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHCCCCHHH
CLVTERFVDPLLEKEMTWHNVSLQIA
HHHHHHHHHHHHHHCCCEECEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]