Click here to switch to the map view.

The map label for this gene is ygbI [H]

Identifier: 238894632

GI number: 238894632

Start: 2523836

End: 2524597

Strand: Direct

Name: ygbI [H]

Synonym: KP1_2633

Alternate gene names: 238894632

Gene position: 2523836-2524597 (Clockwise)

Preceding gene: 238894626

Following gene: 238894634

Centisome position: 48.09

GC content: 60.37

Gene sequence:

>762_bases
GTGATTCCAATCGAACGACATCAGCGTATTTTAGCCCTGGTGGAGCAGCGTGGGGCGGTAAGCATTAACGAGCTGACGGA
GATCCTCGGCGTGTCCCATATGACCATCCGTCGGGACGTTAGTAAACTGGAGGAGCAGGGGCTGCTGGTCAGCGTCTCGG
GCGGCGTGCGCGCCGTCAGCCGGCTGGCCGCGGAACCCAGTCATCTGGTGAAAAGCACGCTGCAGAGTGAGGAGAAACAG
GCGATCGGCGCGCTGGCGGCGAGTCATATCGCCAAAAACAGTTGCATTTATCTGGATGCCGGGACTACCACCCTGGCGCT
GGCGCGGGCGATCCTCGACCGGAACGATCTCCAGGTGGTCACCAATGATTTTGAGATAACCCAGCTGCTGATCGATGCCA
GCCAGTGCGGCGTGATCCACACCGGCGGCACTCTGTGCCGGGAGAACCGCTCTTGCGTGGGCGAATCGGCGGCGCGTACG
TTACGCCACCTGGCTATCGATACGGCCTTTATCTCCGCCAGCGGCTGGGACAGTCGCGGGATATTCACCCCTGATGAGAA
CAAGGTTACCGTCAAGGAGACCGTCAGCCAGGTCAGCGCGAGAAGCATCCTGCTGTGCGACAGTTCGAAATACAATCAGG
TGGCCACGTTTATGGCGTTACCTTTGACCCGGTTCACCACCATCATTACCGACAGGCATCTCTCCGATGCCGCCGCCAGT
CATATCGCCCGGCACGCCTGCGAGGTGCTACGGGCCGGATAA

Upstream 100 bases:

>100_bases
GCCTAAAAACAGCGGCAAAGCGCGATAACAACACCGGGTGTCGCCAGGCCCGCCGCCTGAGTGATGACGCCTGGTGTGAA
AAAATGGTAAGGGGAGAGCG

Downstream 100 bases:

>100_bases
CGCGCGCGGCCACCGCCGGGTTAGCGTTGCCAGTGCTCGATCAGCGCCGCGCCGATCCCGGCGATTTGCTGATTTCGCTC
GGCCATGCTCGCCGGGGTAT

Product: putative DeoR-family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MIPIERHQRILALVEQRGAVSINELTEILGVSHMTIRRDVSKLEEQGLLVSVSGGVRAVSRLAAEPSHLVKSTLQSEEKQ
AIGALAASHIAKNSCIYLDAGTTTLALARAILDRNDLQVVTNDFEITQLLIDASQCGVIHTGGTLCRENRSCVGESAART
LRHLAIDTAFISASGWDSRGIFTPDENKVTVKETVSQVSARSILLCDSSKYNQVATFMALPLTRFTTIITDRHLSDAAAS
HIARHACEVLRAG

Sequences:

>Translated_253_residues
MIPIERHQRILALVEQRGAVSINELTEILGVSHMTIRRDVSKLEEQGLLVSVSGGVRAVSRLAAEPSHLVKSTLQSEEKQ
AIGALAASHIAKNSCIYLDAGTTTLALARAILDRNDLQVVTNDFEITQLLIDASQCGVIHTGGTLCRENRSCVGESAART
LRHLAIDTAFISASGWDSRGIFTPDENKVTVKETVSQVSARSILLCDSSKYNQVATFMALPLTRFTTIITDRHLSDAAAS
HIARHACEVLRAG
>Mature_253_residues
MIPIERHQRILALVEQRGAVSINELTEILGVSHMTIRRDVSKLEEQGLLVSVSGGVRAVSRLAAEPSHLVKSTLQSEEKQ
AIGALAASHIAKNSCIYLDAGTTTLALARAILDRNDLQVVTNDFEITQLLIDASQCGVIHTGGTLCRENRSCVGESAART
LRHLAIDTAFISASGWDSRGIFTPDENKVTVKETVSQVSARSILLCDSSKYNQVATFMALPLTRFTTIITDRHLSDAAAS
HIARHACEVLRAG

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI226510968, Length=252, Percent_Identity=56.3492063492063, Blast_Score=284, Evalue=3e-78,
Organism=Escherichia coli, GI1789519, Length=252, Percent_Identity=29.7619047619048, Blast_Score=120, Evalue=7e-29,
Organism=Escherichia coli, GI1789829, Length=232, Percent_Identity=32.3275862068966, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI87082344, Length=234, Percent_Identity=33.7606837606838, Blast_Score=114, Evalue=4e-27,
Organism=Escherichia coli, GI1787540, Length=239, Percent_Identity=29.2887029288703, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1789059, Length=255, Percent_Identity=26.6666666666667, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1788069, Length=234, Percent_Identity=29.0598290598291, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1789170, Length=232, Percent_Identity=33.1896551724138, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1790753, Length=260, Percent_Identity=29.2307692307692, Blast_Score=84, Evalue=6e-18,
Organism=Escherichia coli, GI1790635, Length=253, Percent_Identity=24.5059288537549, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787063, Length=231, Percent_Identity=26.8398268398268, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 27339; Mature: 27339

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPIERHQRILALVEQRGAVSINELTEILGVSHMTIRRDVSKLEEQGLLVSVSGGVRAVS
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEECCHHHHHH
RLAAEPSHLVKSTLQSEEKQAIGALAASHIAKNSCIYLDAGTTTLALARAILDRNDLQVV
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCEEE
TNDFEITQLLIDASQCGVIHTGGTLCRENRSCVGESAARTLRHLAIDTAFISASGWDSRG
ECCHHHHHHHHHHHHCCEEECCCHHHHCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCC
IFTPDENKVTVKETVSQVSARSILLCDSSKYNQVATFMALPLTRFTTIITDRHLSDAAAS
CCCCCCCCEEHHHHHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
HIARHACEVLRAG
HHHHHHHHHHHCC
>Mature Secondary Structure
MIPIERHQRILALVEQRGAVSINELTEILGVSHMTIRRDVSKLEEQGLLVSVSGGVRAVS
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEECCHHHHHH
RLAAEPSHLVKSTLQSEEKQAIGALAASHIAKNSCIYLDAGTTTLALARAILDRNDLQVV
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCEEE
TNDFEITQLLIDASQCGVIHTGGTLCRENRSCVGESAARTLRHLAIDTAFISASGWDSRG
ECCHHHHHHHHHHHHCCEEECCCHHHHCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCC
IFTPDENKVTVKETVSQVSARSILLCDSSKYNQVATFMALPLTRFTTIITDRHLSDAAAS
CCCCCCCCEEHHHHHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
HIARHACEVLRAG
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]