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The map label for this gene is ykgA [H]

Identifier: 238894626

GI number: 238894626

Start: 2517597

End: 2518547

Strand: Direct

Name: ykgA [H]

Synonym: KP1_2627

Alternate gene names: 238894626

Gene position: 2517597-2518547 (Clockwise)

Preceding gene: 238894624

Following gene: 238894632

Centisome position: 47.97

GC content: 54.68

Gene sequence:

>951_bases
ATGTATGCCGTACTCATGAAGCAGATGCTCTATTTGAAAATGCTGGCGTGGCTGGAGGATAATATCTATTGTAACCCGGC
GATCGATGACCTGGCGCAGTATATGGGCTATTCGCGTCGGTTTGTGTACGACGTGTTTTACCAGTATGGCCAGTTACCCA
TCGGGCAGTATATTCGTCTGCGGCGGTTGACCATCGCAGCGGTCAGTCTGCGCTTAACACGGCAACCGATCGCCGCTATT
GCCTGGCAGTTAAGCTATGACTCGCCGCAGACCTTTTCCCGGGAGTTTAAGAAGCGCTTTTCGCTCTCGCCACGTGAATA
CCGTTGCGCGGCGCACTGGGACACGGCAAAGCTGTTGAAAAAGTTTCACCCGGACGGAGAGAGCCTACCTCTGGCTCGTT
TTTTTTCTCTGCCGGAACAGGTCTATTACGGCTATCCGATGAAGTATGAACTGCGCCTGTCGGATTTGGTGTTGCAAAGC
ACCGCTAAGACGAGCATCAGACAAAAGGTTGACCGTTTTTTCACCGCTGGCGGAGGCTCGCTTTCCGTACTTTCCGTACT
TTCCGACTACGCCGCGGCGAGTAAAAATGAGCTTAACGTCGAGGTTAACGCTTTTGTCGGCTGTCATGAGGCGGGAAAGC
TGCCCCCCGCGCTGGCCATGAACAGCTCGCTGACCACCCGGTCAGGGCTTTATGTCGGGGTTGAATTCTACGGCAGTTGG
TCACGTTATGCTCGTTTATCCAGCGATCTGTATATGGAGCTGCTGCCATCCCTGGGGGTAAGTCGTCGGGATGGCTATGA
CATTGAATGTTTTATAACCCGCCATGCGGAAGGCGAAGAGGCAGGGGACAGGCGCTATCGCGTACGCTATTTTATCCCGG
TGACGCTGTCGGCAGCGGGTCTGCGGTCTGACAGCGGTAGTGGGTCAGGGCCTGTGCCGGGGCGAAGTTAA

Upstream 100 bases:

>100_bases
TATTTAAAGCCGTTTCCCGTTTTTTTATTTTTGCGATGCATAAAAAGCTTAGTGATAGCCGCGCTCTGTTGTTAAAATTA
GCGGAGGACAAGAATACAGG

Downstream 100 bases:

>100_bases
GGTGGCCGGAGCCACCCAGGTTAACATCAAAGCGCAAACCACAGCAGCCAGGTGATGAGAAAGCCCGTCACCCCCATGAT
GGTTGTCAAGACGGTCCAGG

Product: putative AraC-type regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MYAVLMKQMLYLKMLAWLEDNIYCNPAIDDLAQYMGYSRRFVYDVFYQYGQLPIGQYIRLRRLTIAAVSLRLTRQPIAAI
AWQLSYDSPQTFSREFKKRFSLSPREYRCAAHWDTAKLLKKFHPDGESLPLARFFSLPEQVYYGYPMKYELRLSDLVLQS
TAKTSIRQKVDRFFTAGGGSLSVLSVLSDYAAASKNELNVEVNAFVGCHEAGKLPPALAMNSSLTTRSGLYVGVEFYGSW
SRYARLSSDLYMELLPSLGVSRRDGYDIECFITRHAEGEEAGDRRYRVRYFIPVTLSAAGLRSDSGSGSGPVPGRS

Sequences:

>Translated_316_residues
MYAVLMKQMLYLKMLAWLEDNIYCNPAIDDLAQYMGYSRRFVYDVFYQYGQLPIGQYIRLRRLTIAAVSLRLTRQPIAAI
AWQLSYDSPQTFSREFKKRFSLSPREYRCAAHWDTAKLLKKFHPDGESLPLARFFSLPEQVYYGYPMKYELRLSDLVLQS
TAKTSIRQKVDRFFTAGGGSLSVLSVLSDYAAASKNELNVEVNAFVGCHEAGKLPPALAMNSSLTTRSGLYVGVEFYGSW
SRYARLSSDLYMELLPSLGVSRRDGYDIECFITRHAEGEEAGDRRYRVRYFIPVTLSAAGLRSDSGSGSGPVPGRS
>Mature_316_residues
MYAVLMKQMLYLKMLAWLEDNIYCNPAIDDLAQYMGYSRRFVYDVFYQYGQLPIGQYIRLRRLTIAAVSLRLTRQPIAAI
AWQLSYDSPQTFSREFKKRFSLSPREYRCAAHWDTAKLLKKFHPDGESLPLARFFSLPEQVYYGYPMKYELRLSDLVLQS
TAKTSIRQKVDRFFTAGGGSLSVLSVLSDYAAASKNELNVEVNAFVGCHEAGKLPPALAMNSSLTTRSGLYVGVEFYGSW
SRYARLSSDLYMELLPSLGVSRRDGYDIECFITRHAEGEEAGDRRYRVRYFIPVTLSAAGLRSDSGSGSGPVPGRS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790857, Length=284, Percent_Identity=27.8169014084507, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1790497, Length=101, Percent_Identity=40.5940594059406, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081928, Length=111, Percent_Identity=30.6306306306306, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR011256 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35845; Mature: 35845

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYAVLMKQMLYLKMLAWLEDNIYCNPAIDDLAQYMGYSRRFVYDVFYQYGQLPIGQYIRL
CHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHH
RRLTIAAVSLRLTRQPIAAIAWQLSYDSPQTFSREFKKRFSLSPREYRCAAHWDTAKLLK
HHHHHHHHHHHHHHCCHHHHEEEECCCCCHHHHHHHHHHHCCCCHHEEEECCCCHHHHHH
KFHPDGESLPLARFFSLPEQVYYGYPMKYELRLSDLVLQSTAKTSIRQKVDRFFTAGGGS
HHCCCCCCCCHHHHHCCCHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCH
LSVLSVLSDYAAASKNELNVEVNAFVGCHEAGKLPPALAMNSSLTTRSGLYVGVEFYGSW
HHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHCCCCCCCCCCCEEEEEEEECCH
SRYARLSSDLYMELLPSLGVSRRDGYDIECFITRHAEGEEAGDRRYRVRYFIPVTLSAAG
HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEEEEEEEEECC
LRSDSGSGSGPVPGRS
CCCCCCCCCCCCCCCC
>Mature Secondary Structure
MYAVLMKQMLYLKMLAWLEDNIYCNPAIDDLAQYMGYSRRFVYDVFYQYGQLPIGQYIRL
CHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHH
RRLTIAAVSLRLTRQPIAAIAWQLSYDSPQTFSREFKKRFSLSPREYRCAAHWDTAKLLK
HHHHHHHHHHHHHHCCHHHHEEEECCCCCHHHHHHHHHHHCCCCHHEEEECCCCHHHHHH
KFHPDGESLPLARFFSLPEQVYYGYPMKYELRLSDLVLQSTAKTSIRQKVDRFFTAGGGS
HHCCCCCCCCHHHHHCCCHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCH
LSVLSVLSDYAAASKNELNVEVNAFVGCHEAGKLPPALAMNSSLTTRSGLYVGVEFYGSW
HHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHCCCCCCCCCCCEEEEEEEECCH
SRYARLSSDLYMELLPSLGVSRRDGYDIECFITRHAEGEEAGDRRYRVRYFIPVTLSAAG
HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEEEEEEEEECC
LRSDSGSGSGPVPGRS
CCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]