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The map label for this gene is ygbM [H]

Identifier: 238894628

GI number: 238894628

Start: 2519996

End: 2520778

Strand: Reverse

Name: ygbM [H]

Synonym: KP1_2629

Alternate gene names: 238894628

Gene position: 2520778-2519996 (Counterclockwise)

Preceding gene: 238894629

Following gene: 238894627

Centisome position: 48.03

GC content: 58.49

Gene sequence:

>783_bases
ATGCCAAAATTCGCTGCAAATTTATCCATGCTGTTTACCGAACTGCCGTTCCTGGAACGCTTTGCCGCCGCTGCCCGGGC
GGGATTTGAAGCCGTTGAGTTTCTGTTTCCCTATGAGTATGCCGCCGGGGAAATCAGACAGCGCCTGCAGGAGAACCAGC
TGCAGCTGGTGCTGTTCAATACCCCACCCGGCGACGTCAACGCCGGAGAATGGGGGCTCGCCGCCATCCCCGGGAGAAGC
GCGGAGGCCCGACGCGATATTGAGCTGGCGCTGGAGTATGCCTGCCAGCTCGGTTGCCCGCAGGTGCATATCATGGCCGG
CGTGGTGCCGCCGGGAGCGGATCGCGCAGCCTGCGAGGCCGTGCTTATCGATAATCTGCGCTACGCCGCGGAGTGCTTTG
CCCGCCACGACAAGCGGATACTCATCGAAGCGCTGAATCCGCAGACCAAACCGGGCTATCTCTACCACAGTCAATATCAG
ACGCTGGCGATGGTGAAACGGGTCGACAGGCCGAACCTGGCGGTGCAGTTAGATCTGTTTCACGCGCAGAAGGTGGACGG
CAATTTAAGCCATCTTATTACCGAATATGCCGGCCAGTATCGCCATATTCAGATTGCCTCCCTGCCCGACCGTCATGAAC
CGGATGAGGGCGAAATAAACTATCCGTGGCTCTATGCGCTACTGGATAAAACCGGTTATGACGGCTGGATCGGCTGCGAA
TATATCCCCCGGACAGACACGCTTTCCGGGCTGGGGTGGTTCTCGCCCTACCGGAAAAAATAA

Upstream 100 bases:

>100_bases
ACCGAGGAACTGGAAGAGACCGCACGGCTGATATTTACCCTCGGCAACCGCGAGATCCGCTACCTGACCGCTGACGAAGT
GAAAGAACTGAGATAAAACC

Downstream 100 bases:

>100_bases
ACGCCGTTTTCTAAAAAAATAACTCTCTGTACACCTGTTAATACCCGAGGCAAACCTATGTCGACATCGGCGCTGTTACT
TATTGCGTTAGCCAGCGTAG

Product: putative epimerase/isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MPKFAANLSMLFTELPFLERFAAAARAGFEAVEFLFPYEYAAGEIRQRLQENQLQLVLFNTPPGDVNAGEWGLAAIPGRS
AEARRDIELALEYACQLGCPQVHIMAGVVPPGADRAACEAVLIDNLRYAAECFARHDKRILIEALNPQTKPGYLYHSQYQ
TLAMVKRVDRPNLAVQLDLFHAQKVDGNLSHLITEYAGQYRHIQIASLPDRHEPDEGEINYPWLYALLDKTGYDGWIGCE
YIPRTDTLSGLGWFSPYRKK

Sequences:

>Translated_260_residues
MPKFAANLSMLFTELPFLERFAAAARAGFEAVEFLFPYEYAAGEIRQRLQENQLQLVLFNTPPGDVNAGEWGLAAIPGRS
AEARRDIELALEYACQLGCPQVHIMAGVVPPGADRAACEAVLIDNLRYAAECFARHDKRILIEALNPQTKPGYLYHSQYQ
TLAMVKRVDRPNLAVQLDLFHAQKVDGNLSHLITEYAGQYRHIQIASLPDRHEPDEGEINYPWLYALLDKTGYDGWIGCE
YIPRTDTLSGLGWFSPYRKK
>Mature_259_residues
PKFAANLSMLFTELPFLERFAAAARAGFEAVEFLFPYEYAAGEIRQRLQENQLQLVLFNTPPGDVNAGEWGLAAIPGRSA
EARRDIELALEYACQLGCPQVHIMAGVVPPGADRAACEAVLIDNLRYAAECFARHDKRILIEALNPQTKPGYLYHSQYQT
LAMVKRVDRPNLAVQLDLFHAQKVDGNLSHLITEYAGQYRHIQIASLPDRHEPDEGEINYPWLYALLDKTGYDGWIGCEY
IPRTDTLSGLGWFSPYRKK

Specific function: Unknown

COG id: COG3622

COG function: function code G; Hydroxypyruvate isomerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hyi family [H]

Homologues:

Organism=Homo sapiens, GI300068962, Length=262, Percent_Identity=47.3282442748092, Blast_Score=228, Evalue=3e-60,
Organism=Homo sapiens, GI300068964, Length=243, Percent_Identity=46.5020576131687, Blast_Score=203, Evalue=1e-52,
Organism=Escherichia coli, GI1789095, Length=258, Percent_Identity=66.6666666666667, Blast_Score=370, Evalue=1e-104,
Organism=Escherichia coli, GI1786718, Length=258, Percent_Identity=43.0232558139535, Blast_Score=229, Evalue=2e-61,
Organism=Caenorhabditis elegans, GI17552022, Length=253, Percent_Identity=35.5731225296443, Blast_Score=163, Evalue=6e-41,
Organism=Drosophila melanogaster, GI17530883, Length=258, Percent_Identity=35.2713178294574, Blast_Score=154, Evalue=7e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013022
- InterPro:   IPR012307 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: NA

Molecular weight: Translated: 29317; Mature: 29186

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKFAANLSMLFTELPFLERFAAAARAGFEAVEFLFPYEYAAGEIRQRLQENQLQLVLFN
CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEEE
TPPGDVNAGEWGLAAIPGRSAEARRDIELALEYACQLGCPQVHIMAGVVPPGADRAACEA
CCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHH
VLIDNLRYAAECFARHDKRILIEALNPQTKPGYLYHSQYQTLAMVKRVDRPNLAVQLDLF
HHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEHHHHHHHHHHHHCCCCCEEEEEEEE
HAQKVDGNLSHLITEYAGQYRHIQIASLPDRHEPDEGEINYPWLYALLDKTGYDGWIGCE
EHHCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCEECCE
YIPRTDTLSGLGWFSPYRKK
ECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PKFAANLSMLFTELPFLERFAAAARAGFEAVEFLFPYEYAAGEIRQRLQENQLQLVLFN
CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEEE
TPPGDVNAGEWGLAAIPGRSAEARRDIELALEYACQLGCPQVHIMAGVVPPGADRAACEA
CCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHH
VLIDNLRYAAECFARHDKRILIEALNPQTKPGYLYHSQYQTLAMVKRVDRPNLAVQLDLF
HHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEHHHHHHHHHHHHCCCCCEEEEEEEE
HAQKVDGNLSHLITEYAGQYRHIQIASLPDRHEPDEGEINYPWLYALLDKTGYDGWIGCE
EHHCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCEECCE
YIPRTDTLSGLGWFSPYRKK
ECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]